Wall clock time and date at job start Tue Mar 31 2020 07:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46918 * 2 1 4 4 H 1.08996 * 109.46771 * 55.00593 * 3 2 1 5 5 C 1.50704 * 109.46838 * 175.00015 * 3 2 1 6 6 H 1.08005 * 119.99849 * 120.00322 * 5 3 2 7 7 C 1.37868 * 120.00077 * 300.00314 * 5 3 2 8 8 N 1.31517 * 120.00161 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00029 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47177 * 59.99482 * 9 7 5 11 11 H 1.48492 * 109.47395 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46888 * 299.99879 * 9 7 5 13 13 N 1.46497 * 109.47098 * 295.00094 * 3 2 1 14 14 C 1.34779 * 119.99747 * 85.00346 * 13 3 2 15 15 O 1.21588 * 120.00164 * 359.97438 * 14 13 3 16 16 N 1.34780 * 119.99658 * 179.97438 * 14 13 3 17 17 C 1.39978 * 119.99478 * 175.73747 * 16 14 13 18 18 C 1.38987 * 119.99424 * 214.86605 * 17 16 14 19 19 C 1.38214 * 120.22200 * 179.76644 * 18 17 16 20 20 C 1.38023 * 120.22368 * 0.50570 * 19 18 17 21 21 C 1.39580 * 119.99154 * 359.75258 * 20 19 18 22 22 C 1.47862 * 120.10927 * 180.02562 * 21 20 19 23 23 O 1.21552 * 119.99600 * 187.29661 * 22 21 20 24 24 N 1.34775 * 120.00214 * 7.29826 * 22 21 20 25 25 C 1.47018 * 125.64792 * 354.03145 * 24 22 21 26 26 C 1.54314 * 107.27905 * 180.97076 * 25 24 22 27 27 C 1.55152 * 102.86215 * 22.52351 * 26 25 24 28 28 C 1.47420 * 125.64761 * 174.34344 * 24 22 21 29 29 C 1.38586 * 120.00307 * 35.14015 * 17 16 14 30 30 H 1.08997 * 109.46590 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46929 * 299.99536 * 1 2 3 32 32 H 1.09001 * 109.47057 * 59.99662 * 1 2 3 33 33 H 1.09004 * 109.47248 * 240.00407 * 2 1 3 34 34 H 1.08998 * 109.47770 * 120.00215 * 2 1 3 35 35 H 0.97001 * 119.99862 * 179.97438 * 8 7 5 36 36 H 0.96999 * 120.00299 * 264.99767 * 13 3 2 37 37 H 0.96991 * 120.00052 * 355.46153 * 16 14 13 38 38 H 1.07998 * 119.88813 * 0.02562 * 18 17 16 39 39 H 1.08003 * 119.89033 * 180.23426 * 19 18 17 40 40 H 1.07999 * 120.00546 * 179.72054 * 20 19 18 41 41 H 1.09004 * 109.88446 * 300.51527 * 25 24 22 42 42 H 1.09005 * 109.88208 * 61.67808 * 25 24 22 43 43 H 1.09005 * 110.92036 * 264.11569 * 26 25 24 44 44 H 1.08997 * 110.59020 * 140.78961 * 26 25 24 45 45 H 1.08999 * 111.00863 * 206.22792 * 27 26 25 46 46 H 1.09007 * 111.00114 * 82.37633 * 27 26 25 47 47 H 1.09004 * 110.36488 * 274.66888 * 28 24 22 48 48 H 1.09002 * 110.37035 * 36.88407 * 28 24 22 49 49 H 1.08000 * 120.10949 * 0.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4444 0.1238 6 1 4.1473 1.8890 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3366 2.1727 9 14 6.0050 0.8813 1.3817 10 1 6.4995 2.2815 1.3820 11 1 6.3979 0.2167 2.6501 12 1 6.5975 0.1473 0.2346 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6645 -1.3668 15 8 -0.3416 2.6319 -0.4319 16 7 0.0787 3.2675 -2.5183 17 6 -1.2161 3.7776 -2.6695 18 6 -1.8419 3.7281 -3.9095 19 6 -3.1221 4.2259 -4.0631 20 6 -3.7836 4.7851 -2.9885 21 6 -3.1617 4.8444 -1.7403 22 6 -3.8682 5.4423 -0.5872 23 8 -3.2806 5.6142 0.4629 24 7 -5.1636 5.7967 -0.7005 25 6 -5.9566 5.7608 -1.9379 26 6 -7.3696 6.2756 -1.5918 27 6 -7.1275 7.1126 -0.3080 28 6 -6.0181 6.2906 0.3945 29 6 -1.8716 4.3370 -1.5843 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8935 -0.5138 0.8899 35 1 3.8294 -0.0619 2.9493 36 1 2.2719 2.1233 -1.9978 37 1 0.7205 3.3515 -3.2406 38 1 -1.3278 3.2953 -4.7550 39 1 -3.6048 4.1813 -5.0282 40 1 -4.7821 5.1772 -3.1135 41 1 -5.4997 6.4041 -2.6899 42 1 -6.0176 4.7379 -2.3096 43 1 -8.0473 5.4461 -1.3892 44 1 -7.7561 6.9035 -2.3945 45 1 -8.0278 7.1576 0.3047 46 1 -6.7745 8.1138 -0.5553 47 1 -6.4543 5.4549 0.9418 48 1 -5.4424 6.9253 1.0683 49 1 -1.3851 4.3808 -0.6211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096714.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:23 Heat of formation + Delta-G solvation = -9.895319 kcal Electronic energy + Delta-G solvation = -30240.927634 eV Core-core repulsion = 26168.963239 eV Total energy + Delta-G solvation = -4071.964395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74723 -39.90009 -38.25874 -37.39131 -35.45282 -34.22268 -32.49837 -32.11999 -30.95239 -30.89386 -29.93208 -28.60025 -26.78592 -25.07481 -23.42680 -22.84616 -22.28293 -21.51572 -20.61777 -19.99659 -19.49142 -18.14740 -17.85792 -16.82010 -16.51061 -16.12247 -15.82669 -15.45028 -15.06206 -14.88735 -14.53184 -14.35930 -14.04564 -13.84663 -13.75626 -13.63081 -13.21766 -13.04549 -12.89586 -12.64730 -12.55972 -12.16943 -12.05487 -11.62088 -11.55031 -11.49025 -11.22949 -11.17217 -10.97340 -10.83824 -10.80283 -10.31057 -10.19020 -10.12709 -9.88554 -9.57583 -9.33909 -9.03430 -8.95733 -8.76444 -8.48754 -8.08172 -7.72532 -6.10419 -4.20088 0.88366 1.43414 2.75170 2.85044 3.18400 3.26801 3.32459 3.34426 3.73053 4.04020 4.09542 4.15607 4.33593 4.50263 4.58814 4.80923 4.86953 4.95787 4.97666 5.10362 5.14308 5.20969 5.22566 5.33508 5.44602 5.47632 5.53017 5.56459 5.61347 5.76453 5.91470 6.06986 6.25961 6.36157 6.43741 6.46079 6.51519 6.62519 6.70458 7.03301 7.11356 7.17927 7.33214 7.36755 7.40796 7.48264 7.65847 7.88644 7.99470 8.13746 8.20612 8.74462 8.85485 9.26192 9.48057 10.94900 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.002333 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.911808 B =12000.935600 C =12747.045334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.717 5.717 14 C 0.690 3.310 15 O -0.570 6.570 16 N -0.698 5.698 17 C 0.174 3.826 18 C -0.131 4.131 19 C -0.111 4.111 20 C -0.153 4.153 21 C -0.117 4.117 22 C 0.575 3.425 23 O -0.524 6.524 24 N -0.620 5.620 25 C 0.090 3.910 26 C -0.136 4.136 27 C -0.134 4.134 28 C 0.104 3.896 29 C -0.061 4.061 30 H 0.021 0.979 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.030 0.970 34 H 0.099 0.901 35 H 0.265 0.735 36 H 0.385 0.615 37 H 0.403 0.597 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.155 0.845 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.025 10.947 -14.605 27.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.368 5.368 14 C 0.390 3.610 15 O -0.447 6.447 16 N -0.346 5.346 17 C 0.077 3.923 18 C -0.153 4.153 19 C -0.129 4.129 20 C -0.172 4.172 21 C -0.121 4.121 22 C 0.366 3.634 23 O -0.400 6.400 24 N -0.355 5.355 25 C -0.032 4.032 26 C -0.174 4.174 27 C -0.172 4.172 28 C -0.018 4.018 29 C -0.082 4.082 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.217 0.783 37 H 0.238 0.762 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.188 10.784 -12.865 26.256 hybrid contribution 1.656 -0.162 -0.745 1.823 sum -18.531 10.622 -13.610 25.327 Atomic orbital electron populations 1.21815 0.98264 0.97870 1.01327 1.21955 0.92679 0.99838 1.02193 1.18738 0.94007 0.88914 0.79934 0.93116 1.21172 0.90608 1.39208 1.06355 0.92158 1.24877 0.98609 0.94817 0.95358 1.69890 1.35216 1.37392 1.09326 0.86502 0.84817 0.78291 0.77427 1.20194 1.21125 1.20209 1.45828 1.13157 1.58504 1.19330 1.16154 0.83805 0.78798 0.82195 1.90933 1.51665 1.64369 1.37747 1.42870 1.11924 1.61321 1.18472 1.17424 0.85555 0.95389 0.93902 1.21103 0.95552 1.02005 0.96629 1.20814 0.94217 0.99196 0.98710 1.22523 1.01924 1.00607 0.92127 1.19625 0.95580 1.03472 0.93413 1.18055 0.79692 0.77669 0.88025 1.90826 1.65357 1.53999 1.29840 1.48301 1.10073 1.66512 1.10631 1.22542 0.91375 1.01562 0.87730 1.22737 0.95887 1.00293 0.98475 1.22795 0.98654 0.98975 0.96767 1.22242 0.91353 0.97961 0.90262 1.21557 0.93360 0.92743 1.00546 0.96020 0.93080 0.94366 0.95130 0.88247 0.92464 0.78252 0.76204 0.85561 0.85457 0.82808 0.90246 0.90154 0.90269 0.89818 0.89696 0.90504 0.91288 0.90092 0.82503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.30 16 3 C 0.29 7.26 2.24 -69.08 -0.15 7.11 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.15 8.73 -34.44 -0.30 -14.45 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.95 11.29 55.43 0.63 -24.32 16 9 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.72 -14.86 5.03 -59.81 -0.30 -15.16 16 14 C 0.69 14.03 6.97 -86.91 -0.61 13.42 16 15 O -0.57 -13.81 10.92 5.29 0.06 -13.75 16 16 N -0.70 -10.76 5.34 -14.25 -0.08 -10.84 16 17 C 0.17 2.64 6.29 -83.73 -0.53 2.11 16 18 C -0.13 -1.51 9.96 -39.31 -0.39 -1.90 16 19 C -0.11 -1.09 10.02 -39.67 -0.40 -1.49 16 20 C -0.15 -1.66 8.61 -39.16 -0.34 -1.99 16 21 C -0.12 -1.76 5.87 -104.99 -0.62 -2.37 16 22 C 0.58 9.16 7.81 -12.32 -0.10 9.07 16 23 O -0.52 -10.66 16.60 5.32 0.09 -10.57 16 24 N -0.62 -7.11 3.33 -175.85 -0.59 -7.69 16 25 C 0.09 0.64 4.86 -3.07 -0.01 0.63 16 26 C -0.14 -0.64 6.95 -24.90 -0.17 -0.82 16 27 C -0.13 -0.76 7.08 -24.58 -0.17 -0.94 16 28 C 0.10 0.99 6.94 -2.53 -0.02 0.97 16 29 C -0.06 -1.07 8.23 -38.98 -0.32 -1.39 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 1.28 7.84 -51.93 -0.41 0.87 16 32 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.39 6.79 8.56 -40.82 -0.35 6.44 16 37 H 0.40 4.69 8.84 -40.82 -0.36 4.33 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 40 H 0.16 1.18 2.74 -57.95 -0.16 1.02 16 41 H 0.08 0.48 6.75 -51.93 -0.35 0.12 16 42 H 0.08 0.53 6.74 -51.93 -0.35 0.18 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.87 7.98 -51.93 -0.41 0.46 16 49 H 0.16 3.40 5.84 -52.49 -0.31 3.10 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -34.85 386.80 -10.47 -45.32 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -7.04 Total: 11.93 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -4.05 Total: 3.53 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.34 Total: -58.01 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.15 Total: -24.32 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.85 -10.47 -45.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096714.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.424 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds