Wall clock time and date at job start Tue Mar 31 2020 07:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47112 * 2 1 4 4 H 1.08999 * 109.46669 * 305.71367 * 3 2 1 5 5 C 1.50706 * 109.46895 * 185.71460 * 3 2 1 6 6 H 1.07997 * 119.99867 * 244.74952 * 5 3 2 7 7 C 1.37876 * 119.99879 * 64.74680 * 5 3 2 8 8 N 1.31517 * 119.99674 * 202.26838 * 7 5 3 9 9 Si 1.86796 * 120.00121 * 22.27008 * 7 5 3 10 10 H 1.48496 * 109.47022 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.47247 * 299.99733 * 9 7 5 12 12 H 1.48498 * 109.47253 * 59.99887 * 9 7 5 13 13 N 1.46501 * 109.47441 * 65.71279 * 3 2 1 14 14 C 1.34772 * 120.00134 * 275.00128 * 13 3 2 15 15 O 1.21589 * 119.99905 * 0.02562 * 14 13 3 16 16 N 1.34779 * 120.00195 * 179.97438 * 14 13 3 17 17 C 1.39976 * 119.99769 * 184.80474 * 16 14 13 18 18 C 1.38986 * 119.99398 * 140.37165 * 17 16 14 19 19 C 1.38211 * 120.22142 * 179.75842 * 18 17 16 20 20 C 1.38026 * 120.22103 * 0.51954 * 19 18 17 21 21 C 1.39572 * 119.99762 * 359.73839 * 20 19 18 22 22 C 1.47850 * 120.11579 * 180.02562 * 21 20 19 23 23 O 1.21551 * 120.00170 * 172.43708 * 22 21 20 24 24 N 1.34776 * 120.00196 * 352.43645 * 22 21 20 25 25 C 1.47030 * 125.64476 * 4.91792 * 24 22 21 26 26 C 1.54316 * 107.27540 * 180.96768 * 25 24 22 27 27 C 1.55160 * 102.86123 * 22.52279 * 26 25 24 28 28 C 1.47423 * 125.65502 * 185.22423 * 24 22 21 29 29 C 1.38585 * 120.00126 * 320.64791 * 17 16 14 30 30 H 1.09004 * 109.47381 * 300.00662 * 1 2 3 31 31 H 1.09007 * 109.47238 * 60.00246 * 1 2 3 32 32 H 1.08997 * 109.47661 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47137 * 239.99489 * 2 1 3 34 34 H 1.09005 * 109.46867 * 119.99369 * 2 1 3 35 35 H 0.96998 * 119.99940 * 354.96442 * 8 7 5 36 36 H 0.97002 * 119.99848 * 94.99903 * 13 3 2 37 37 H 0.96996 * 119.99892 * 4.80572 * 16 14 13 38 38 H 1.07997 * 119.88693 * 0.02562 * 18 17 16 39 39 H 1.07999 * 119.89198 * 180.23449 * 19 18 17 40 40 H 1.08004 * 119.99925 * 179.72038 * 20 19 18 41 41 H 1.08997 * 109.88328 * 300.51440 * 25 24 22 42 42 H 1.08997 * 109.87812 * 61.67714 * 25 24 22 43 43 H 1.08999 * 110.92134 * 264.11013 * 26 25 24 44 44 H 1.08995 * 110.58837 * 140.78622 * 26 25 24 45 45 H 1.09004 * 110.99899 * 206.22455 * 27 26 25 46 46 H 1.09000 * 111.00256 * 82.38556 * 27 26 25 47 47 H 1.09003 * 110.36609 * 274.67448 * 28 24 22 48 48 H 1.09002 * 110.36222 * 36.88543 * 28 24 22 49 49 H 1.08002 * 120.10850 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5955 1.9850 -0.8344 5 6 3.5404 1.4448 -0.1415 6 1 4.1580 1.8163 0.6628 7 6 4.1245 0.9726 -1.2977 8 7 5.3736 0.5614 -1.2828 9 14 3.1417 0.9169 -2.8852 10 1 3.9917 0.3731 -3.9747 11 1 1.9536 0.0450 -2.7016 12 1 2.6987 2.2887 -3.2416 13 7 1.6672 2.0924 1.2590 14 6 0.4514 2.6588 1.3907 15 8 -0.3363 2.6300 0.4649 16 7 0.1082 3.2562 2.5491 17 6 -1.1881 3.7554 2.7219 18 6 -1.8317 3.6091 3.9450 19 6 -3.1097 4.1047 4.1223 20 6 -3.7594 4.7388 3.0826 21 6 -3.1237 4.8860 1.8488 22 6 -3.8170 5.5652 0.7335 23 8 -3.2165 5.8151 -0.2934 24 7 -5.1149 5.9074 0.8553 25 6 -5.9298 5.7589 2.0701 26 6 -7.3508 6.2568 1.7324 27 6 -7.4064 6.1210 0.1877 28 6 -5.9544 6.4867 -0.2091 29 6 -1.8317 4.3905 1.6717 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 5.9064 0.6579 -0.4779 36 1 2.2954 2.1150 1.9977 37 1 0.7594 3.3401 3.2630 38 1 -1.3299 3.1104 4.7609 39 1 -3.6033 3.9914 5.0762 40 1 -4.7597 5.1207 3.2238 41 1 -5.9632 4.7110 2.3682 42 1 -5.5091 6.3621 2.8746 43 1 -7.4807 7.2964 2.0330 44 1 -8.1014 5.6216 2.2027 45 1 -8.1182 6.8264 -0.2411 46 1 -7.6462 5.0991 -0.1062 47 1 -5.8315 7.5693 -0.2423 48 1 -5.7008 6.0470 -1.1737 49 1 -1.3347 4.5015 0.7192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096715.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:28 Heat of formation + Delta-G solvation = -11.036489 kcal Electronic energy + Delta-G solvation = -30347.039267 eV Core-core repulsion = 26275.025387 eV Total energy + Delta-G solvation = -4072.013880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.82906 -40.00986 -38.38290 -37.46792 -35.64058 -34.34004 -32.54880 -32.21950 -31.39248 -30.98146 -30.04216 -28.69703 -27.00574 -25.14758 -23.30552 -22.60522 -22.20160 -21.57796 -20.82538 -20.07164 -19.66697 -18.47643 -17.93140 -17.08442 -16.88424 -16.51510 -16.01759 -15.55305 -15.28042 -14.77137 -14.57530 -14.50118 -13.95842 -13.85203 -13.73350 -13.62119 -13.36523 -13.16430 -12.87738 -12.72932 -12.54046 -12.41874 -12.27460 -12.18382 -11.72867 -11.67464 -11.58429 -11.21614 -10.91070 -10.82385 -10.66893 -10.40006 -10.24009 -9.95962 -9.83598 -9.66550 -9.50469 -9.13942 -9.05576 -8.84158 -8.27340 -8.22388 -7.95532 -6.60083 -4.19919 0.79701 1.33353 2.67950 2.76553 3.07766 3.43001 3.49441 3.60510 3.64508 3.91444 4.04126 4.10055 4.43674 4.44897 4.51674 4.74325 4.80933 4.82024 4.89279 5.03242 5.07222 5.14596 5.14736 5.28913 5.39323 5.40381 5.45556 5.48005 5.55944 5.71928 5.82366 5.99964 6.12466 6.14252 6.17252 6.26646 6.32544 6.35999 6.52733 6.69851 6.83076 6.96946 7.03339 7.08128 7.18592 7.26277 7.43316 7.51366 7.79326 8.05730 8.24846 8.61555 8.75136 9.12369 9.47436 10.80890 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016236 B = 0.002576 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.147020 B =10868.976003 C =11895.223041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.266 3.734 4 H 0.042 0.958 5 C -0.623 4.623 6 H 0.061 0.939 7 C 0.043 3.957 8 N -0.892 5.892 9 Si 1.037 2.963 10 H -0.283 1.283 11 H -0.271 1.271 12 H -0.279 1.279 13 N -0.711 5.711 14 C 0.691 3.309 15 O -0.574 6.574 16 N -0.698 5.698 17 C 0.171 3.829 18 C -0.126 4.126 19 C -0.112 4.112 20 C -0.149 4.149 21 C -0.118 4.118 22 C 0.575 3.425 23 O -0.525 6.525 24 N -0.619 5.619 25 C 0.090 3.910 26 C -0.136 4.136 27 C -0.134 4.134 28 C 0.105 3.895 29 C -0.055 4.055 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.269 0.731 36 H 0.390 0.610 37 H 0.404 0.596 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.156 0.844 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.088 10.292 13.560 30.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.162 3.838 4 H 0.059 0.941 5 C -0.661 4.661 6 H 0.079 0.921 7 C -0.164 4.164 8 N -0.524 5.524 9 Si 0.864 3.136 10 H -0.209 1.209 11 H -0.197 1.197 12 H -0.205 1.205 13 N -0.362 5.362 14 C 0.392 3.608 15 O -0.451 6.451 16 N -0.347 5.347 17 C 0.075 3.925 18 C -0.147 4.147 19 C -0.130 4.130 20 C -0.167 4.167 21 C -0.122 4.122 22 C 0.366 3.634 23 O -0.402 6.402 24 N -0.354 5.354 25 C -0.033 4.033 26 C -0.174 4.174 27 C -0.172 4.172 28 C -0.017 4.017 29 C -0.077 4.077 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.222 0.778 37 H 0.239 0.761 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.173 0.827 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -25.177 9.815 10.461 28.977 hybrid contribution 0.708 0.441 2.535 2.669 sum -24.469 10.257 12.997 29.544 Atomic orbital electron populations 1.21867 0.97328 0.98679 1.02054 1.22291 0.93777 0.99753 1.01518 1.18962 0.95588 0.88246 0.81014 0.94054 1.22015 0.89658 1.49608 1.04825 0.92064 1.25646 0.97465 0.91704 1.01611 1.70900 1.10069 1.38220 1.33258 0.84118 0.75723 0.77803 0.75906 1.20887 1.19686 1.20523 1.45542 1.13122 1.58600 1.18934 1.16147 0.83710 0.78723 0.82226 1.90935 1.51045 1.64538 1.38615 1.42799 1.11588 1.61980 1.18357 1.17380 0.85483 0.95440 0.94237 1.21169 0.95328 1.01162 0.97066 1.20841 0.94344 0.98931 0.98933 1.22544 1.01839 0.99964 0.92383 1.19610 0.95509 1.03076 0.93999 1.18037 0.79824 0.78222 0.87361 1.90823 1.64688 1.54276 1.30375 1.48318 1.09811 1.63825 1.13494 1.22560 0.91054 1.01510 0.88152 1.22734 0.95787 1.02374 0.96469 1.22803 0.95954 1.02885 0.95601 1.22235 0.89037 0.98492 0.91928 1.21443 0.93425 0.92561 1.00241 0.93344 0.92974 0.95263 0.91571 0.93213 0.92066 0.77751 0.76066 0.85480 0.85347 0.82727 0.90076 0.90270 0.90312 0.89748 0.89647 0.90393 0.91335 0.90170 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.53 37.16 0.32 -2.69 16 2 C -0.13 -3.07 5.31 -26.73 -0.14 -3.22 16 3 C 0.27 6.43 1.83 -69.08 -0.13 6.30 16 4 H 0.04 1.10 6.21 -51.93 -0.32 0.78 16 5 C -0.62 -16.90 8.97 -34.44 -0.31 -17.20 16 6 H 0.06 1.72 7.96 -52.49 -0.42 1.31 16 7 C 0.04 1.22 5.22 -17.82 -0.09 1.13 16 8 N -0.89 -26.56 13.70 55.43 0.76 -25.81 16 9 Si 1.04 25.62 26.41 -169.99 -4.49 21.13 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.33 5.99 56.52 0.34 -5.99 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.71 -14.38 5.03 -59.81 -0.30 -14.68 16 14 C 0.69 13.52 6.99 -86.92 -0.61 12.91 16 15 O -0.57 -13.22 11.19 5.29 0.06 -13.16 16 16 N -0.70 -10.40 5.33 -14.25 -0.08 -10.47 16 17 C 0.17 2.48 6.22 -83.73 -0.52 1.96 16 18 C -0.13 -1.38 9.96 -39.31 -0.39 -1.77 16 19 C -0.11 -1.04 10.02 -39.67 -0.40 -1.44 16 20 C -0.15 -1.52 8.60 -39.16 -0.34 -1.86 16 21 C -0.12 -1.69 5.87 -104.99 -0.62 -2.30 16 22 C 0.58 8.77 7.81 -12.33 -0.10 8.67 16 23 O -0.53 -10.28 16.67 5.32 0.09 -10.20 16 24 N -0.62 -6.75 3.33 -175.62 -0.58 -7.33 16 25 C 0.09 0.59 4.86 -3.06 -0.01 0.58 16 26 C -0.14 -0.59 6.95 -24.90 -0.17 -0.76 16 27 C -0.13 -0.73 7.08 -24.59 -0.17 -0.91 16 28 C 0.11 0.94 6.89 -2.54 -0.02 0.93 16 29 C -0.06 -0.93 8.22 -38.98 -0.32 -1.25 16 30 H 0.05 1.03 5.63 -51.93 -0.29 0.73 16 31 H 0.05 1.17 7.89 -51.93 -0.41 0.76 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.58 5.23 -51.93 -0.27 1.31 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.27 7.91 8.73 -40.82 -0.36 7.55 16 36 H 0.39 6.90 8.55 -40.82 -0.35 6.55 16 37 H 0.40 4.58 8.84 -40.82 -0.36 4.21 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.16 1.10 2.76 -57.65 -0.16 0.94 16 41 H 0.08 0.50 6.67 -51.93 -0.35 0.15 16 42 H 0.08 0.43 6.80 -51.93 -0.35 0.08 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 49 H 0.15 3.12 6.16 -52.49 -0.32 2.80 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -35.65 383.79 -9.82 -45.47 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -7.04 Total: 10.19 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -4.02 Total: -0.92 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.20 Total: -58.30 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.15 Total: -23.36 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -4.49 Total: 21.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.65 -9.82 -45.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096715.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.434 kcal (2) G-P(sol) polarization free energy of solvation -35.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds