Wall clock time and date at job start Tue Mar 31 2020 06:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47579 * 28.01719 * 3 2 1 5 5 C 1.37098 * 120.00200 * 264.23006 * 4 3 2 6 6 H 1.07999 * 119.99622 * 197.72578 * 5 4 3 7 7 C 1.38947 * 119.99858 * 17.72233 * 5 4 3 8 8 N 1.31411 * 119.99930 * 21.41867 * 7 5 4 9 9 Si 1.86800 * 120.00107 * 201.42076 * 7 5 4 10 10 H 1.48499 * 109.46705 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47417 * 119.99810 * 9 7 5 12 12 H 1.48496 * 109.47053 * 240.00286 * 9 7 5 13 13 C 1.34778 * 119.99818 * 84.22809 * 4 3 2 14 14 O 1.21291 * 120.00097 * 179.97438 * 13 4 3 15 15 C 1.50703 * 120.00043 * 0.02562 * 13 4 3 16 16 C 1.50696 * 109.47000 * 179.97438 * 15 13 4 17 17 N 1.28816 * 124.75975 * 90.32129 * 16 15 13 18 18 C 1.32509 * 117.12236 * 180.18835 * 17 16 15 19 19 C 1.48368 * 122.95897 * 179.74796 * 18 17 16 20 20 C 1.39355 * 120.09822 * 359.71345 * 19 18 17 21 21 C 1.37984 * 119.90093 * 180.02562 * 20 19 18 22 22 C 1.38545 * 120.09877 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.89932 * 179.97438 * 22 21 20 24 24 C 1.38535 * 120.19330 * 0.27091 * 22 21 20 25 25 C 1.37988 * 120.10098 * 359.44501 * 24 22 21 26 26 C 1.34823 * 114.08029 * 359.48448 * 18 17 16 27 27 S 1.70919 * 124.75680 * 269.96999 * 16 15 13 28 28 H 1.09000 * 109.47313 * 268.01657 * 3 2 1 29 29 H 1.09002 * 109.46956 * 148.01764 * 3 2 1 30 30 H 0.97003 * 119.99996 * 180.02562 * 8 7 5 31 31 H 1.08992 * 109.47470 * 59.99807 * 15 13 4 32 32 H 1.09004 * 109.46651 * 299.99657 * 15 13 4 33 33 H 1.08002 * 120.05191 * 0.04301 * 20 19 18 34 34 H 1.08002 * 119.95492 * 179.97438 * 21 20 19 35 35 H 1.08003 * 119.94429 * 179.72978 * 24 22 21 36 36 H 1.07994 * 120.04812 * 180.29401 * 25 24 22 37 37 H 1.07998 * 126.06236 * 180.26128 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.2184 -0.6488 5 6 3.4386 -2.3086 0.1091 6 1 4.0554 -3.0880 -0.3133 7 6 2.9912 -2.4106 1.4207 8 7 1.9373 -1.7292 1.8103 9 14 3.8880 -3.5162 2.6301 10 1 5.0339 -4.1694 1.9478 11 1 4.3871 -2.7031 3.7680 12 1 2.9558 -4.5556 3.1357 13 6 3.2110 -1.2682 -1.9908 14 8 3.6163 -2.2774 -2.5280 15 6 2.8360 -0.0697 -2.8239 16 6 3.0545 -0.3831 -4.2817 17 7 2.1666 -0.8905 -5.0649 18 6 2.5237 -1.1081 -6.3223 19 6 1.6070 -1.6920 -7.3323 20 6 0.3068 -2.0441 -6.9752 21 6 -0.5422 -2.5872 -7.9176 22 6 -0.1035 -2.7831 -9.2171 23 9 -0.9380 -3.3157 -10.1365 24 6 1.1901 -2.4402 -9.5749 25 6 2.0441 -1.8910 -8.6405 26 6 3.7917 -0.7471 -6.6044 27 16 4.5126 -0.1072 -5.1297 28 1 2.9714 0.0364 1.0270 29 1 2.9709 0.8725 -0.5443 30 1 1.6252 -1.8001 2.7260 31 1 3.4563 0.7798 -2.5384 32 1 1.7868 0.1743 -2.6577 33 1 -0.0359 -1.8919 -5.9624 34 1 -1.5499 -2.8608 -7.6417 35 1 1.5292 -2.5987 -10.5880 36 1 3.0509 -1.6196 -8.9216 37 1 4.2792 -0.8347 -7.5641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:26 Heat of formation + Delta-G solvation = 32.916669 kcal Electronic energy + Delta-G solvation = -25792.366478 eV Core-core repulsion = 21769.884927 eV Total energy + Delta-G solvation = -4022.481551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.069 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.05479 -40.18643 -39.02862 -38.25582 -35.87137 -34.43149 -32.81618 -31.93165 -31.37646 -30.19856 -28.19895 -27.48377 -25.25944 -24.19962 -22.97423 -22.11373 -19.91373 -19.32273 -18.15901 -17.93551 -17.60010 -16.69411 -16.41176 -16.27209 -15.75013 -15.74370 -15.13945 -14.86894 -14.34124 -14.28005 -14.12111 -13.74003 -13.66052 -13.28178 -13.08039 -12.98402 -12.82678 -12.51830 -12.31749 -12.13431 -11.77852 -11.58018 -11.40491 -11.33004 -11.19282 -11.12753 -10.64546 -10.42646 -10.38391 -9.57058 -9.50932 -9.35330 -9.30471 -9.28351 -8.72723 -8.13131 -8.05799 -6.57485 -4.07076 0.43329 1.07903 1.17202 1.47153 1.83541 2.83552 3.03724 3.19114 3.24949 3.45042 3.64910 3.71380 3.90757 3.99350 4.07083 4.08139 4.56594 4.66300 4.68747 4.78979 4.83193 5.03306 5.06596 5.11436 5.19703 5.29745 5.50845 5.54809 5.68720 5.76373 5.84811 5.90333 5.97043 6.03095 6.25490 6.36021 6.42371 6.68760 7.41087 7.78558 7.87276 8.19129 8.68138 8.90918 9.09873 9.61256 10.48532 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.002645 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.939512 B =10584.484085 C =11134.821705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.242 3.758 3 C 0.219 3.781 4 N -0.439 5.439 5 C -0.313 4.313 6 H 0.110 0.890 7 C 0.033 3.967 8 N -0.875 5.875 9 Si 0.927 3.073 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.283 1.283 13 C 0.461 3.539 14 O -0.561 6.561 15 C -0.070 4.070 16 C 0.102 3.898 17 N -0.463 5.463 18 C 0.110 3.890 19 C -0.022 4.022 20 C -0.056 4.056 21 C -0.154 4.154 22 C 0.097 3.903 23 F -0.142 7.142 24 C -0.155 4.155 25 C -0.077 4.077 26 C -0.264 4.264 27 S 0.146 5.854 28 H 0.130 0.870 29 H 0.085 0.915 30 H 0.274 0.726 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.195 6.605 -15.604 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.077 4.077 3 C 0.091 3.909 4 N -0.159 5.159 5 C -0.440 4.440 6 H 0.128 0.872 7 C -0.171 4.171 8 N -0.513 5.513 9 Si 0.753 3.247 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.209 1.209 13 C 0.247 3.753 14 O -0.443 6.443 15 C -0.114 4.114 16 C -0.178 4.178 17 N -0.176 5.176 18 C -0.022 4.022 19 C -0.025 4.025 20 C -0.075 4.075 21 C -0.172 4.172 22 C 0.078 3.922 23 F -0.120 7.120 24 C -0.174 4.174 25 C -0.096 4.096 26 C -0.404 4.404 27 S 0.404 5.596 28 H 0.148 0.852 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.096 6.406 -15.197 16.780 hybrid contribution -0.137 -1.133 0.099 1.146 sum 2.959 5.273 -15.097 16.263 Atomic orbital electron populations 1.80920 1.13557 1.09621 1.10588 1.29276 0.95351 0.91680 0.91385 1.18788 0.81713 0.87829 1.02525 1.43611 1.56431 1.12212 1.03670 1.19761 1.29968 1.01177 0.93070 0.87244 1.25287 0.94942 0.98230 0.98638 1.69866 1.19732 1.42685 1.19064 0.85844 0.79590 0.79484 0.79737 1.19062 1.20378 1.20865 1.19637 0.84709 0.88610 0.82362 1.90594 1.49808 1.33107 1.70801 1.20406 1.05139 0.99625 0.86252 1.26160 0.92164 0.99529 0.99913 1.66033 1.34650 1.14456 1.02445 1.18575 0.91765 1.01530 0.90297 1.18125 0.93009 0.99810 0.91524 1.21245 0.91902 0.94284 1.00085 1.21156 1.01667 1.02767 0.91654 1.17815 0.88680 0.98817 0.86911 1.91494 1.71079 1.83857 1.65586 1.20977 0.92472 1.02836 1.01072 1.20958 0.99688 0.97581 0.91416 1.26916 0.98478 1.11653 1.03341 1.83784 1.17782 1.57485 1.00594 0.85229 0.89758 0.91568 0.87555 0.87043 0.83699 0.84402 0.84490 0.84753 0.80658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.76 18.54 42.16 0.78 -9.98 16 2 C 0.24 5.08 12.95 -20.76 -0.27 4.81 16 3 C 0.22 4.01 4.91 -6.83 -0.03 3.98 16 4 N -0.44 -9.68 2.60 -117.94 -0.31 -9.99 16 5 C -0.31 -7.75 9.32 -14.93 -0.14 -7.89 16 6 H 0.11 2.89 7.39 -52.49 -0.39 2.51 16 7 C 0.03 0.79 4.87 -17.47 -0.08 0.70 16 8 N -0.87 -21.33 9.48 55.50 0.53 -20.80 16 9 Si 0.93 19.06 29.60 -169.99 -5.03 14.03 16 10 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.46 9.91 7.56 -10.98 -0.08 9.82 16 14 O -0.56 -14.24 15.68 5.55 0.09 -14.15 16 15 C -0.07 -1.15 4.88 -29.04 -0.14 -1.29 16 16 C 0.10 1.70 5.86 -13.54 -0.08 1.62 16 17 N -0.46 -8.14 9.92 -8.42 -0.08 -8.22 16 18 C 0.11 1.65 6.65 -84.62 -0.56 1.09 16 19 C -0.02 -0.29 5.88 -104.89 -0.62 -0.91 16 20 C -0.06 -0.75 9.63 -39.26 -0.38 -1.13 16 21 C -0.15 -1.80 10.01 -39.56 -0.40 -2.20 16 22 C 0.10 1.11 7.30 -39.36 -0.29 0.82 16 23 F -0.14 -1.65 17.26 2.25 0.04 -1.61 16 24 C -0.15 -1.54 10.01 -39.56 -0.40 -1.93 16 25 C -0.08 -0.80 9.48 -39.25 -0.37 -1.18 16 26 C -0.26 -3.32 10.63 29.52 0.31 -3.00 16 27 S 0.15 1.93 23.16 -107.50 -2.49 -0.56 16 28 H 0.13 2.43 6.46 -51.93 -0.34 2.10 16 29 H 0.08 1.09 6.68 -51.93 -0.35 0.75 16 30 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.11 1.28 7.42 -51.93 -0.39 0.89 16 32 H 0.11 1.83 7.51 -51.93 -0.39 1.44 16 33 H 0.15 2.08 7.70 -52.49 -0.40 1.68 16 34 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 35 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.13 1.03 6.66 -52.49 -0.35 0.68 16 37 H 0.18 1.55 6.89 -52.49 -0.36 1.19 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -31.96 348.63 -7.69 -39.65 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -2.94 Total: 3.06 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -3.53 Total: 3.31 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.92 Total: -48.99 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.09 Total: -14.15 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.49 Total: -0.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.96 -7.69 -39.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.567 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds