Wall clock time and date at job start Tue Mar 31 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47579 * 28.01719 * 3 2 1 5 5 C 1.37098 * 120.00200 * 264.23006 * 4 3 2 6 6 H 1.07999 * 119.99622 * 197.72578 * 5 4 3 7 7 C 1.38947 * 119.99858 * 17.72233 * 5 4 3 8 8 N 1.31411 * 119.99930 * 21.41867 * 7 5 4 9 9 Si 1.86800 * 120.00107 * 201.42076 * 7 5 4 10 10 H 1.48499 * 109.46705 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47417 * 119.99810 * 9 7 5 12 12 H 1.48496 * 109.47053 * 240.00286 * 9 7 5 13 13 C 1.34778 * 119.99818 * 84.22809 * 4 3 2 14 14 O 1.21291 * 120.00097 * 179.97438 * 13 4 3 15 15 C 1.50703 * 120.00043 * 0.02562 * 13 4 3 16 16 C 1.50696 * 109.47000 * 179.97438 * 15 13 4 17 17 N 1.28816 * 124.75975 * 90.32129 * 16 15 13 18 18 C 1.32509 * 117.12236 * 180.18835 * 17 16 15 19 19 C 1.48368 * 122.95897 * 179.74796 * 18 17 16 20 20 C 1.39355 * 120.09822 * 359.71345 * 19 18 17 21 21 C 1.37984 * 119.90093 * 180.02562 * 20 19 18 22 22 C 1.38545 * 120.09877 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.89932 * 179.97438 * 22 21 20 24 24 C 1.38535 * 120.19330 * 0.27091 * 22 21 20 25 25 C 1.37988 * 120.10098 * 359.44501 * 24 22 21 26 26 C 1.34823 * 114.08029 * 359.48448 * 18 17 16 27 27 S 1.70919 * 124.75680 * 269.96999 * 16 15 13 28 28 H 1.09000 * 109.47313 * 268.01657 * 3 2 1 29 29 H 1.09002 * 109.46956 * 148.01764 * 3 2 1 30 30 H 0.97003 * 119.99996 * 180.02562 * 8 7 5 31 31 H 1.08992 * 109.47470 * 59.99807 * 15 13 4 32 32 H 1.09004 * 109.46651 * 299.99657 * 15 13 4 33 33 H 1.08002 * 120.05191 * 0.04301 * 20 19 18 34 34 H 1.08002 * 119.95492 * 179.97438 * 21 20 19 35 35 H 1.08003 * 119.94429 * 179.72978 * 24 22 21 36 36 H 1.07994 * 120.04812 * 180.29401 * 25 24 22 37 37 H 1.07998 * 126.06236 * 180.26128 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.2184 -0.6488 5 6 3.4386 -2.3086 0.1091 6 1 4.0554 -3.0880 -0.3133 7 6 2.9912 -2.4106 1.4207 8 7 1.9373 -1.7292 1.8103 9 14 3.8880 -3.5162 2.6301 10 1 5.0339 -4.1694 1.9478 11 1 4.3871 -2.7031 3.7680 12 1 2.9558 -4.5556 3.1357 13 6 3.2110 -1.2682 -1.9908 14 8 3.6163 -2.2774 -2.5280 15 6 2.8360 -0.0697 -2.8239 16 6 3.0545 -0.3831 -4.2817 17 7 2.1666 -0.8905 -5.0649 18 6 2.5237 -1.1081 -6.3223 19 6 1.6070 -1.6920 -7.3323 20 6 0.3068 -2.0441 -6.9752 21 6 -0.5422 -2.5872 -7.9176 22 6 -0.1035 -2.7831 -9.2171 23 9 -0.9380 -3.3157 -10.1365 24 6 1.1901 -2.4402 -9.5749 25 6 2.0441 -1.8910 -8.6405 26 6 3.7917 -0.7471 -6.6044 27 16 4.5126 -0.1072 -5.1297 28 1 2.9714 0.0364 1.0270 29 1 2.9709 0.8725 -0.5443 30 1 1.6252 -1.8001 2.7260 31 1 3.4563 0.7798 -2.5384 32 1 1.7868 0.1743 -2.6577 33 1 -0.0359 -1.8919 -5.9624 34 1 -1.5499 -2.8608 -7.6417 35 1 1.5292 -2.5987 -10.5880 36 1 3.0509 -1.6196 -8.9216 37 1 4.2792 -0.8347 -7.5641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097097227.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:25 Heat of formation + Delta-G solvation = 14.406910 kcal Electronic energy + Delta-G solvation = -25793.169121 eV Core-core repulsion = 21769.884927 eV Total energy + Delta-G solvation = -4023.284194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.069 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.94718 -41.28965 -40.53813 -39.30182 -37.59301 -36.18611 -34.12319 -33.54899 -32.25775 -31.33559 -29.37689 -29.01796 -26.81341 -25.40581 -23.86520 -23.22104 -21.22630 -20.59676 -19.79077 -19.05296 -18.58617 -18.30747 -17.95823 -17.25403 -16.69831 -16.65649 -16.60493 -16.20436 -15.86217 -15.56459 -15.40806 -14.89002 -14.71882 -14.62013 -14.33143 -14.22936 -14.17172 -13.77901 -13.50875 -13.39797 -13.31545 -13.15098 -12.98655 -12.82406 -12.38676 -12.34415 -12.11836 -12.05198 -12.00789 -11.13503 -10.73973 -10.60968 -10.38870 -10.28490 -10.15712 -9.93164 -9.03778 -8.40543 -5.96255 -0.54194 0.13470 0.21947 0.44147 0.76430 1.37818 1.49311 1.60952 1.75981 1.82477 2.05249 2.26622 2.36929 2.73044 2.91956 3.01038 3.17177 3.20570 3.60240 3.64944 3.71392 3.89010 3.94623 4.11261 4.19623 4.27245 4.32185 4.51076 4.56870 4.63729 4.80528 4.92767 4.93193 5.01727 5.07422 5.27818 5.43484 5.49692 5.81915 6.01563 6.38532 6.79965 7.02142 7.11141 7.33059 7.88425 8.63129 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.002645 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.939512 B =10584.484085 C =11134.821705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.255 3.745 3 C 0.218 3.782 4 N -0.451 5.451 5 C -0.338 4.338 6 H 0.082 0.918 7 C 0.007 3.993 8 N -0.891 5.891 9 Si 0.985 3.015 10 H -0.271 1.271 11 H -0.261 1.261 12 H -0.292 1.292 13 C 0.457 3.543 14 O -0.608 6.608 15 C -0.061 4.061 16 C 0.058 3.942 17 N -0.498 5.498 18 C 0.080 3.920 19 C -0.039 4.039 20 C -0.079 4.079 21 C -0.158 4.158 22 C 0.088 3.912 23 F -0.144 7.144 24 C -0.143 4.143 25 C -0.068 4.068 26 C -0.248 4.248 27 S 0.196 5.804 28 H 0.128 0.872 29 H 0.147 0.853 30 H 0.274 0.726 31 H 0.154 0.846 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.145 0.855 35 H 0.170 0.830 36 H 0.169 0.831 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.259 7.835 -17.300 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C -0.062 4.062 3 C 0.092 3.908 4 N -0.171 5.171 5 C -0.465 4.465 6 H 0.100 0.900 7 C -0.195 4.195 8 N -0.530 5.530 9 Si 0.809 3.191 10 H -0.196 1.196 11 H -0.185 1.185 12 H -0.219 1.219 13 C 0.245 3.755 14 O -0.492 6.492 15 C -0.104 4.104 16 C -0.220 4.220 17 N -0.212 5.212 18 C -0.051 4.051 19 C -0.042 4.042 20 C -0.098 4.098 21 C -0.177 4.177 22 C 0.068 3.932 23 F -0.122 7.122 24 C -0.162 4.162 25 C -0.087 4.087 26 C -0.387 4.387 27 S 0.453 5.547 28 H 0.146 0.854 29 H 0.164 0.836 30 H 0.085 0.915 31 H 0.172 0.828 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.163 0.837 35 H 0.187 0.813 36 H 0.187 0.813 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 5.148 7.670 -16.877 19.240 hybrid contribution -0.756 -1.555 0.520 1.806 sum 4.392 6.114 -16.357 18.006 Atomic orbital electron populations 1.80921 1.14962 1.10994 1.12113 1.29847 0.95930 0.90407 0.90058 1.19204 0.79893 0.88423 1.03312 1.43769 1.56476 1.12734 1.04113 1.19620 1.30717 1.02107 0.94057 0.90010 1.25858 0.95134 0.99243 0.99299 1.69947 1.20217 1.43550 1.19257 0.85002 0.78073 0.77846 0.78135 1.19563 1.18508 1.21919 1.20495 0.82947 0.89602 0.82407 1.90552 1.51549 1.35391 1.71753 1.20348 1.05705 0.98480 0.85858 1.26211 0.94134 1.01501 1.00183 1.66002 1.36378 1.14902 1.03936 1.18881 0.93253 1.03047 0.89946 1.18329 0.92709 1.00521 0.92669 1.21124 0.92993 0.96230 0.99500 1.21214 1.01918 1.02650 0.91937 1.17980 0.89477 0.99150 0.86591 1.91488 1.71330 1.83944 1.65486 1.21339 0.91394 1.01034 1.02414 1.21278 1.01148 0.96422 0.89866 1.27449 0.97460 1.09044 1.04756 1.83486 1.15193 1.56152 0.99826 0.85428 0.83606 0.91540 0.82803 0.87458 0.86113 0.83681 0.81268 0.81338 0.76584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.69 18.54 20.00 0.37 -23.32 16 2 C 0.26 10.66 12.95 89.44 1.16 11.82 16 3 C 0.22 7.70 4.91 84.57 0.42 8.11 16 4 N -0.45 -19.91 2.60 -645.43 -1.68 -21.58 16 5 C -0.34 -17.05 9.32 84.04 0.78 -16.27 16 6 H 0.08 4.51 7.39 -2.91 -0.02 4.49 16 7 C 0.01 0.34 4.87 84.93 0.41 0.75 16 8 N -0.89 -43.47 9.48 21.66 0.21 -43.27 16 9 Si 0.98 39.28 29.60 68.60 2.03 41.31 16 10 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 11 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 12 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.46 19.76 7.56 87.66 0.66 20.42 16 14 O -0.61 -31.66 15.68 -3.06 -0.05 -31.71 16 15 C -0.06 -1.93 4.88 29.10 0.14 -1.79 16 16 C 0.06 1.90 5.86 88.55 0.52 2.41 16 17 N -0.50 -17.72 9.92 -180.56 -1.79 -19.51 16 18 C 0.08 2.33 6.65 40.96 0.27 2.60 16 19 C -0.04 -1.03 5.88 -20.04 -0.12 -1.14 16 20 C -0.08 -2.22 9.63 22.48 0.22 -2.00 16 21 C -0.16 -3.79 10.01 22.28 0.22 -3.57 16 22 C 0.09 1.89 7.30 22.41 0.16 2.05 16 23 F -0.14 -3.17 17.26 44.97 0.78 -2.40 16 24 C -0.14 -2.44 10.01 22.28 0.22 -2.21 16 25 C -0.07 -1.23 9.48 22.48 0.21 -1.01 16 26 C -0.25 -5.52 10.63 67.04 0.71 -4.80 16 27 S 0.20 4.72 23.16 -56.49 -1.31 3.41 16 28 H 0.13 4.63 6.46 -2.39 -0.02 4.62 16 29 H 0.15 3.29 6.68 -2.39 -0.02 3.27 16 30 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 31 H 0.15 3.21 7.42 -2.39 -0.02 3.19 16 32 H 0.11 3.49 7.51 -2.39 -0.02 3.47 16 33 H 0.12 3.86 7.70 -2.91 -0.02 3.83 16 34 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.17 1.77 6.66 -2.91 -0.02 1.75 16 37 H 0.22 2.75 6.89 -2.91 -0.02 2.73 16 Total: -1.00 -73.63 348.63 5.71 -67.92 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.15 Total: 13.78 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 6.00 Total: 15.37 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -2.89 Total: -107.68 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.05 Total: -31.71 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.31 Total: 3.41 kcal Total: -73.63 5.71 -67.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097227.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.330 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds