Wall clock time and date at job start Tue Mar 31 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86798 * 119.99625 * 2 1 4 4 H 1.48491 * 109.47385 * 269.99683 * 3 2 1 5 5 H 1.48499 * 109.47457 * 30.00321 * 3 2 1 6 6 H 1.48509 * 109.47031 * 149.99731 * 3 2 1 7 7 C 1.39937 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99855 * 197.85931 * 7 2 1 9 9 C 1.41403 * 120.00333 * 17.85920 * 7 2 1 10 10 C 1.40720 * 120.23781 * 24.38523 * 9 7 2 11 11 C 1.37619 * 119.73895 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.25012 * 0.02961 * 11 10 9 13 13 S 1.76194 * 119.74733 * 179.97438 * 12 11 10 14 14 O 1.42105 * 106.40435 * 336.45427 * 13 12 11 15 15 O 1.42106 * 106.40087 * 203.53850 * 13 12 11 16 16 N 1.65598 * 107.22012 * 89.99751 * 13 12 11 17 17 C 1.39310 * 120.00287 * 64.99990 * 16 13 12 18 18 N 1.32978 * 125.26736 * 344.99979 * 17 16 13 19 19 C 1.32958 * 109.62260 * 180.02562 * 18 17 16 20 20 C 1.40594 * 132.75214 * 179.97438 * 19 18 17 21 21 C 1.36261 * 119.27277 * 180.02562 * 20 19 18 22 22 C 1.40206 * 119.59777 * 0.02562 * 21 20 19 23 23 C 1.35254 * 120.19338 * 0.02610 * 22 21 20 24 24 N 1.35835 * 120.59390 * 359.95789 * 23 22 21 25 25 N 1.31787 * 125.27367 * 164.99837 * 17 16 13 26 26 C 1.38632 * 120.50074 * 0.24310 * 12 11 10 27 27 C 1.37622 * 120.24698 * 359.45880 * 26 12 11 28 28 H 0.96998 * 120.00113 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.13077 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87542 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99928 * 244.99936 * 16 13 12 32 32 H 1.07998 * 120.36326 * 0.02562 * 20 19 18 33 33 H 1.08001 * 120.19829 * 180.29553 * 21 20 19 34 34 H 1.08002 * 119.89777 * 180.02562 * 22 21 20 35 35 H 1.08008 * 119.70291 * 179.97438 * 23 22 21 36 36 H 1.08000 * 119.87502 * 179.70717 * 26 12 11 37 37 H 1.07997 * 120.12389 * 180.27715 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4396 2.6527 0.7001 6 1 3.5397 1.4403 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2342 0.2874 9 6 1.3521 -2.4072 -0.3745 10 6 0.2209 -2.3626 -1.2103 11 6 -0.4098 -3.5322 -1.5684 12 6 0.0651 -4.7509 -1.1085 13 16 -0.7530 -6.2401 -1.5748 14 8 -2.0857 -5.8780 -1.9099 15 8 -0.4364 -7.2012 -0.5770 16 7 -0.0461 -6.7699 -2.9754 17 6 1.2880 -7.1710 -2.9740 18 7 2.1654 -6.9160 -2.0078 19 6 3.3447 -7.4414 -2.3256 20 6 4.5880 -7.4625 -1.6696 21 6 5.6414 -8.0952 -2.2585 22 6 5.4692 -8.7126 -3.5055 23 6 4.2649 -8.6798 -4.1202 24 7 3.2095 -8.0516 -3.5401 25 7 1.8760 -7.8619 -3.9299 26 6 1.1753 -4.8062 -0.2801 27 6 1.8254 -3.6497 0.0859 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1509 -1.4144 -1.5692 30 1 -1.2784 -3.5005 -2.2094 31 1 -0.5610 -6.8010 -3.7969 32 1 4.7069 -6.9825 -0.7095 33 1 6.6020 -8.1246 -1.7657 34 1 6.3008 -9.2157 -3.9765 35 1 4.1413 -9.1576 -5.0809 36 1 1.5337 -5.7607 0.0761 37 1 2.6928 -3.6955 0.7277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097098477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:08 Heat of formation + Delta-G solvation = 73.229150 kcal Electronic energy + Delta-G solvation = -26945.923848 eV Core-core repulsion = 23010.536250 eV Total energy + Delta-G solvation = -3935.387598 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.073 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.66567 -38.26262 -37.46845 -36.55927 -35.23707 -34.74368 -33.97683 -33.49335 -30.24006 -30.16501 -29.86662 -29.32126 -25.75847 -23.96967 -23.48649 -22.01290 -21.42560 -21.04289 -19.28119 -18.15202 -17.67656 -17.51354 -17.09425 -16.68505 -16.33870 -16.16165 -15.53761 -15.38651 -14.82422 -14.57895 -14.05360 -13.38287 -13.17250 -13.03611 -12.91752 -12.76619 -12.40122 -12.09360 -11.93631 -11.67154 -11.50706 -11.44572 -11.40047 -11.33231 -11.27871 -11.15519 -10.98400 -10.81652 -10.38185 -9.98399 -9.60117 -9.48785 -9.41125 -8.95034 -8.33899 -7.88390 -7.55276 -7.08170 -4.73767 0.55655 0.85894 0.93308 2.01693 2.33634 2.69168 2.90069 2.94165 2.95224 3.08039 3.18322 3.33129 3.69863 3.88628 4.19057 4.31388 4.47807 4.51144 4.67044 4.94205 5.00492 5.16897 5.37341 5.51302 5.63497 5.88339 5.97739 6.18522 6.19081 6.27651 6.35510 6.67937 6.75281 6.79236 6.90019 7.07447 7.16258 7.45448 7.54826 7.73234 7.85997 7.95489 8.06365 8.39284 8.59148 8.74405 9.82985 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.011506 B = 0.003840 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.848397 B = 7290.021579 C = 9075.045564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.144 3.856 10 C -0.185 4.185 11 C -0.019 4.019 12 C -0.774 4.774 13 S 2.683 3.317 14 O -0.968 6.968 15 O -0.958 6.958 16 N -1.009 6.009 17 C 0.515 3.485 18 N -0.541 5.541 19 C 0.308 3.692 20 C -0.102 4.102 21 C -0.061 4.061 22 C -0.167 4.167 23 C 0.119 3.881 24 N -0.283 5.283 25 N -0.365 5.365 26 C 0.038 3.962 27 C -0.246 4.246 28 H 0.289 0.711 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.432 0.568 32 H 0.161 0.839 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.115 0.885 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.097 -11.368 -7.211 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.464 4.464 8 H 0.105 0.895 9 C 0.140 3.860 10 C -0.205 4.205 11 C -0.039 4.039 12 C -0.873 4.873 13 S 2.784 3.216 14 O -0.959 6.959 15 O -0.948 6.948 16 N -0.757 5.757 17 C 0.145 3.855 18 N -0.275 5.275 19 C 0.054 3.946 20 C -0.124 4.124 21 C -0.087 4.087 22 C -0.190 4.190 23 C -0.010 4.010 24 N -0.058 5.058 25 N -0.205 5.205 26 C 0.017 3.983 27 C -0.267 4.267 28 H 0.100 0.900 29 H 0.139 0.861 30 H 0.120 0.880 31 H 0.268 0.732 32 H 0.178 0.822 33 H 0.167 0.833 34 H 0.176 0.824 35 H 0.186 0.814 36 H 0.133 0.867 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.483 -11.676 -6.962 16.575 hybrid contribution 0.645 1.323 -0.563 1.576 sum 10.128 -10.353 -7.525 16.322 Atomic orbital electron populations 1.69833 1.07897 1.30290 1.30751 1.26134 0.94867 1.02064 0.91900 0.86162 0.80527 0.79646 0.79681 1.18900 1.19892 1.18207 1.19941 0.98521 0.91232 1.36702 0.89498 1.17871 0.89888 0.92237 0.85996 1.21299 0.99845 0.96741 1.02641 1.20263 0.95980 0.91901 0.95772 1.28721 1.19349 1.13710 1.25537 1.01833 0.73004 0.75123 0.71650 1.93540 1.33961 1.84889 1.83487 1.93513 1.84747 1.61309 1.55264 1.53582 1.13292 1.77307 1.31499 1.19724 0.86770 0.90210 0.88754 1.70827 0.98302 1.29886 1.28505 1.21572 0.94940 0.92698 0.85402 1.20406 0.87671 1.02386 1.01953 1.21222 0.99155 0.94051 0.94316 1.20899 0.96320 1.04640 0.97161 1.21502 0.84339 0.95646 0.99480 1.47394 1.08172 1.35092 1.15139 1.78681 0.86938 1.31702 1.23174 1.20217 0.90115 0.97649 0.90272 1.20974 1.04432 0.92736 1.08580 0.90020 0.86088 0.88033 0.73221 0.82168 0.83252 0.82406 0.81372 0.86703 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.67 10.95 55.55 0.61 -18.06 16 2 C 0.07 1.70 5.14 -17.34 -0.09 1.61 16 3 Si 0.92 17.26 29.59 -169.99 -5.03 12.23 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 7 C -0.44 -10.88 9.05 -37.74 -0.34 -11.22 16 8 H 0.09 2.04 7.91 -52.49 -0.41 1.63 16 9 C 0.14 3.73 5.58 -106.82 -0.60 3.13 16 10 C -0.18 -4.75 8.70 -38.87 -0.34 -5.09 16 11 C -0.02 -0.45 9.49 -39.66 -0.38 -0.82 16 12 C -0.77 -18.02 5.74 -39.29 -0.23 -18.25 16 13 S 2.68 55.83 5.46 -107.50 -0.59 55.25 16 14 O -0.97 -21.22 17.26 -57.17 -0.99 -22.21 16 15 O -0.96 -21.85 16.77 -57.17 -0.96 -22.81 16 16 N -1.01 -17.79 5.88 29.91 0.18 -17.62 16 17 C 0.51 9.57 8.56 -321.76 -2.76 6.82 16 18 N -0.54 -10.29 8.25 -13.19 -0.11 -10.39 16 19 C 0.31 4.74 7.87 -156.29 -1.23 3.51 16 20 C -0.10 -1.12 10.11 -39.40 -0.40 -1.52 16 21 C -0.06 -0.43 10.07 -39.55 -0.40 -0.83 16 22 C -0.17 -1.02 9.99 -39.91 -0.40 -1.42 16 23 C 0.12 1.06 11.19 -16.84 -0.19 0.87 16 24 N -0.28 -3.99 3.89 -12.35 -0.05 -4.04 16 25 N -0.36 -6.12 12.81 29.91 0.38 -5.74 16 26 C 0.04 0.89 8.15 -39.66 -0.32 0.56 16 27 C -0.25 -5.99 9.80 -38.87 -0.38 -6.37 16 28 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 29 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 30 H 0.10 2.25 7.60 -52.49 -0.40 1.85 16 31 H 0.43 6.12 8.95 -34.47 -0.31 5.81 16 32 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 34 H 0.16 0.37 8.06 -52.49 -0.42 -0.06 16 35 H 0.17 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.12 2.56 6.82 -52.49 -0.36 2.20 16 37 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -34.52 337.66 -12.56 -47.07 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -3.05 Total: 10.23 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -8.04 Total: -29.02 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 1.01 Total: -55.85 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -1.95 Total: -45.01 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Atomic # 16 Polarization: 55.83 SS G_CDS: -0.59 Total: 55.25 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.52 -12.56 -47.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097098477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.303 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds