Wall clock time and date at job start Tue Mar 31 2020 05:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86798 * 119.99625 * 2 1 4 4 H 1.48491 * 109.47385 * 269.99683 * 3 2 1 5 5 H 1.48499 * 109.47457 * 30.00321 * 3 2 1 6 6 H 1.48509 * 109.47031 * 149.99731 * 3 2 1 7 7 C 1.39937 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99855 * 197.85931 * 7 2 1 9 9 C 1.41403 * 120.00333 * 17.85920 * 7 2 1 10 10 C 1.40720 * 120.23781 * 24.38523 * 9 7 2 11 11 C 1.37619 * 119.73895 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.25012 * 0.02961 * 11 10 9 13 13 S 1.76194 * 119.74733 * 179.97438 * 12 11 10 14 14 O 1.42105 * 106.40435 * 336.45427 * 13 12 11 15 15 O 1.42106 * 106.40087 * 203.53850 * 13 12 11 16 16 N 1.65598 * 107.22012 * 89.99751 * 13 12 11 17 17 C 1.39310 * 120.00287 * 64.99990 * 16 13 12 18 18 N 1.32978 * 125.26736 * 344.99979 * 17 16 13 19 19 C 1.32958 * 109.62260 * 180.02562 * 18 17 16 20 20 C 1.40594 * 132.75214 * 179.97438 * 19 18 17 21 21 C 1.36261 * 119.27277 * 180.02562 * 20 19 18 22 22 C 1.40206 * 119.59777 * 0.02562 * 21 20 19 23 23 C 1.35254 * 120.19338 * 0.02610 * 22 21 20 24 24 N 1.35835 * 120.59390 * 359.95789 * 23 22 21 25 25 N 1.31787 * 125.27367 * 164.99837 * 17 16 13 26 26 C 1.38632 * 120.50074 * 0.24310 * 12 11 10 27 27 C 1.37622 * 120.24698 * 359.45880 * 26 12 11 28 28 H 0.96998 * 120.00113 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.13077 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87542 * 179.97438 * 11 10 9 31 31 H 0.97002 * 119.99928 * 244.99936 * 16 13 12 32 32 H 1.07998 * 120.36326 * 0.02562 * 20 19 18 33 33 H 1.08001 * 120.19829 * 180.29553 * 21 20 19 34 34 H 1.08002 * 119.89777 * 180.02562 * 22 21 20 35 35 H 1.08008 * 119.70291 * 179.97438 * 23 22 21 36 36 H 1.08000 * 119.87502 * 179.70717 * 26 12 11 37 37 H 1.07997 * 120.12389 * 180.27715 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4396 2.6527 0.7001 6 1 3.5397 1.4403 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0489 -1.2342 0.2874 9 6 1.3521 -2.4072 -0.3745 10 6 0.2209 -2.3626 -1.2103 11 6 -0.4098 -3.5322 -1.5684 12 6 0.0651 -4.7509 -1.1085 13 16 -0.7530 -6.2401 -1.5748 14 8 -2.0857 -5.8780 -1.9099 15 8 -0.4364 -7.2012 -0.5770 16 7 -0.0461 -6.7699 -2.9754 17 6 1.2880 -7.1710 -2.9740 18 7 2.1654 -6.9160 -2.0078 19 6 3.3447 -7.4414 -2.3256 20 6 4.5880 -7.4625 -1.6696 21 6 5.6414 -8.0952 -2.2585 22 6 5.4692 -8.7126 -3.5055 23 6 4.2649 -8.6798 -4.1202 24 7 3.2095 -8.0516 -3.5401 25 7 1.8760 -7.8619 -3.9299 26 6 1.1753 -4.8062 -0.2801 27 6 1.8254 -3.6497 0.0859 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1509 -1.4144 -1.5692 30 1 -1.2784 -3.5005 -2.2094 31 1 -0.5610 -6.8010 -3.7969 32 1 4.7069 -6.9825 -0.7095 33 1 6.6020 -8.1246 -1.7657 34 1 6.3008 -9.2157 -3.9765 35 1 4.1413 -9.1576 -5.0809 36 1 1.5337 -5.7607 0.0761 37 1 2.6928 -3.6955 0.7277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097098477.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:06 Heat of formation + Delta-G solvation = 51.884674 kcal Electronic energy + Delta-G solvation = -26946.849414 eV Core-core repulsion = 23010.536250 eV Total energy + Delta-G solvation = -3936.313164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.073 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.69475 -39.35949 -39.18503 -38.29550 -37.00229 -35.96838 -35.79190 -34.46806 -32.06490 -31.28298 -31.20016 -30.73311 -27.61684 -24.81823 -24.45448 -23.28972 -23.15282 -22.91712 -20.74649 -19.46128 -19.30382 -18.97191 -18.44815 -18.03155 -17.50715 -17.30601 -17.12468 -16.51289 -16.12941 -15.78376 -15.53638 -15.20526 -14.96878 -14.22760 -14.14126 -13.97486 -13.79890 -13.65302 -13.51892 -13.30218 -13.26146 -13.16784 -12.95915 -12.88172 -12.55882 -12.26773 -12.23101 -12.11330 -11.94298 -11.52763 -11.29156 -11.18943 -11.11008 -10.10205 -9.77785 -9.47069 -9.24715 -8.85789 -6.63795 -0.69286 -0.18089 -0.05178 0.50157 1.01542 1.14897 1.36106 1.44349 1.51993 1.58313 1.83174 2.12328 2.47291 2.48227 2.72107 2.88464 3.17772 3.49097 3.58274 3.82742 3.95600 4.19277 4.31370 4.45659 4.46952 4.50665 4.86413 4.89157 4.97146 5.07285 5.15384 5.19109 5.28240 5.30077 5.46339 5.56793 5.63531 5.66489 5.81038 5.85374 5.96313 6.19209 6.50399 6.70312 6.82884 6.84514 8.09400 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.011506 B = 0.003840 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.848397 B = 7290.021579 C = 9075.045564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.033 3.967 3 Si 0.994 3.006 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.251 1.251 7 C -0.464 4.464 8 H 0.094 0.906 9 C 0.117 3.883 10 C -0.209 4.209 11 C -0.024 4.024 12 C -0.788 4.788 13 S 2.723 3.277 14 O -0.981 6.981 15 O -0.978 6.978 16 N -1.000 6.000 17 C 0.489 3.511 18 N -0.593 5.593 19 C 0.280 3.720 20 C -0.135 4.135 21 C -0.028 4.028 22 C -0.135 4.135 23 C 0.093 3.907 24 N -0.286 5.286 25 N -0.380 5.380 26 C 0.040 3.960 27 C -0.262 4.262 28 H 0.298 0.702 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.444 0.556 32 H 0.162 0.838 33 H 0.197 0.803 34 H 0.213 0.787 35 H 0.198 0.802 36 H 0.122 0.878 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.486 -12.298 -8.161 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.174 1.174 7 C -0.491 4.491 8 H 0.112 0.888 9 C 0.113 3.887 10 C -0.229 4.229 11 C -0.045 4.045 12 C -0.885 4.885 13 S 2.820 3.180 14 O -0.971 6.971 15 O -0.968 6.968 16 N -0.753 5.753 17 C 0.119 3.881 18 N -0.329 5.329 19 C 0.030 3.970 20 C -0.157 4.157 21 C -0.054 4.054 22 C -0.157 4.157 23 C -0.034 4.034 24 N -0.060 5.060 25 N -0.222 5.222 26 C 0.020 3.980 27 C -0.283 4.283 28 H 0.109 0.891 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.284 0.716 32 H 0.180 0.820 33 H 0.214 0.786 34 H 0.230 0.770 35 H 0.215 0.785 36 H 0.140 0.860 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 12.910 -12.613 -7.916 19.708 hybrid contribution -0.164 1.364 -0.365 1.422 sum 12.746 -11.248 -8.281 18.909 Atomic orbital electron populations 1.69873 1.09521 1.31876 1.30823 1.27068 0.95549 1.05332 0.90641 0.85015 0.79181 0.74654 0.79846 1.18420 1.18908 1.17418 1.20246 0.99023 0.92014 1.37774 0.88844 1.18212 0.90454 0.93360 0.86672 1.21326 1.00879 0.96873 1.03850 1.20474 0.96278 0.91936 0.95776 1.29123 1.19114 1.14847 1.25387 1.00609 0.72036 0.73822 0.71490 1.93514 1.34714 1.84983 1.83890 1.93478 1.84998 1.61428 1.56928 1.52920 1.13873 1.77312 1.31203 1.19840 0.86731 0.91692 0.89791 1.70676 0.99930 1.32384 1.29911 1.22071 0.95325 0.93249 0.86383 1.20740 0.87326 1.04781 1.02812 1.21880 0.99433 0.90154 0.93910 1.21663 0.96276 1.01780 0.95960 1.22459 0.83984 0.95871 1.01134 1.47530 1.08036 1.35354 1.15089 1.78488 0.88627 1.31941 1.23124 1.20329 0.90034 0.97670 0.89942 1.21182 1.05226 0.92697 1.09161 0.89051 0.87051 0.86663 0.71630 0.82024 0.78605 0.77015 0.78504 0.85979 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.84 10.95 21.82 0.24 -39.60 16 2 C 0.03 1.58 5.14 85.25 0.44 2.02 16 3 Si 0.99 35.11 29.59 68.60 2.03 37.14 16 4 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 5 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 6 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 7 C -0.46 -23.74 9.05 23.46 0.21 -23.53 16 8 H 0.09 4.48 7.91 -2.91 -0.02 4.46 16 9 C 0.12 6.30 5.58 -21.29 -0.12 6.18 16 10 C -0.21 -11.26 8.70 22.73 0.20 -11.06 16 11 C -0.02 -1.23 9.49 22.22 0.21 -1.02 16 12 C -0.79 -38.11 5.74 22.46 0.13 -37.98 16 13 S 2.72 116.61 5.46 -56.49 -0.31 116.30 16 14 O -0.98 -43.69 17.26 -128.00 -2.21 -45.89 16 15 O -0.98 -45.84 16.77 -128.00 -2.15 -47.99 16 16 N -1.00 -36.53 5.88 -59.27 -0.35 -36.88 16 17 C 0.49 18.82 8.56 261.12 2.24 21.05 16 18 N -0.59 -23.37 8.25 -195.66 -1.61 -24.99 16 19 C 0.28 8.68 7.87 134.06 1.06 9.74 16 20 C -0.13 -2.75 10.11 22.38 0.23 -2.52 16 21 C -0.03 -0.26 10.07 22.29 0.22 -0.04 16 22 C -0.14 -0.91 9.99 22.06 0.22 -0.69 16 23 C 0.09 1.35 11.19 83.38 0.93 2.28 16 24 N -0.29 -7.84 3.89 -192.97 -0.75 -8.59 16 25 N -0.38 -12.96 12.81 -59.30 -0.76 -13.72 16 26 C 0.04 1.97 8.15 22.22 0.18 2.15 16 27 C -0.26 -13.27 9.80 22.73 0.22 -13.05 16 28 H 0.30 13.23 8.30 -92.71 -0.77 12.46 16 29 H 0.11 6.08 6.16 -2.91 -0.02 6.07 16 30 H 0.12 5.30 7.60 -2.91 -0.02 5.28 16 31 H 0.44 13.06 8.95 -96.74 -0.87 12.20 16 32 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 33 H 0.20 0.05 8.06 -2.91 -0.02 0.03 16 34 H 0.21 -0.74 8.06 -2.91 -0.02 -0.77 16 35 H 0.20 1.57 8.06 -2.91 -0.02 1.54 16 36 H 0.12 5.70 6.82 -2.91 -0.02 5.68 16 37 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -80.52 337.66 0.79 -79.74 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.29 Total: 30.93 kcal Atomic # 6 Polarization: -52.82 SS G_CDS: 6.37 Total: -46.45 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -3.23 Total: -123.78 kcal Atomic # 8 Polarization: -89.53 SS G_CDS: -4.36 Total: -93.89 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Atomic # 16 Polarization: 116.61 SS G_CDS: -0.31 Total: 116.30 kcal Total: -80.52 0.79 -79.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097098477.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.621 kcal (2) G-P(sol) polarization free energy of solvation -80.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds