Wall clock time and date at job start Tue Mar 31 2020 04:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28441 * 125.18862 * 2 1 4 4 C 1.30862 * 110.92522 * 179.97438 * 3 2 1 5 5 C 1.39671 * 107.86160 * 0.02562 * 4 3 2 6 6 C 1.36600 * 125.19020 * 179.68569 * 2 1 3 7 7 C 1.47161 * 126.88282 * 359.97438 * 6 2 1 8 8 O 1.21627 * 120.00246 * 350.67859 * 7 6 2 9 9 N 1.34771 * 120.00048 * 170.67412 * 7 6 2 10 10 C 1.46507 * 120.00089 * 359.28542 * 9 7 6 11 11 C 1.50699 * 109.46630 * 81.27379 * 10 9 7 12 12 H 1.07998 * 120.00369 * 3.71372 * 11 10 9 13 13 C 1.37884 * 119.99348 * 183.71246 * 11 10 9 14 14 N 1.31505 * 120.00101 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99506 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47630 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47478 * 119.99823 * 15 13 11 18 18 H 1.48501 * 109.47090 * 239.99896 * 15 13 11 19 19 C 1.46497 * 120.00282 * 179.28848 * 9 7 6 20 20 C 1.53004 * 109.47124 * 243.23839 * 19 9 7 21 21 C 1.52999 * 109.47015 * 179.97438 * 20 19 9 22 22 C 1.52995 * 109.47303 * 60.00514 * 21 20 19 23 23 C 1.53000 * 109.47007 * 299.99738 * 22 21 20 24 24 C 1.53001 * 109.47171 * 299.99989 * 23 22 21 25 25 C 1.53002 * 109.46980 * 59.99866 * 24 23 22 26 26 C 1.52999 * 109.47268 * 299.99919 * 21 20 19 27 27 C 1.52991 * 109.47036 * 60.00326 * 25 24 23 28 28 C 1.53002 * 109.47424 * 123.23881 * 19 9 7 29 29 H 1.09003 * 109.46616 * 85.74558 * 1 2 3 30 30 H 1.08998 * 109.46929 * 205.74381 * 1 2 3 31 31 H 1.09000 * 109.47198 * 325.74840 * 1 2 3 32 32 H 1.08005 * 126.07010 * 180.02562 * 4 3 2 33 33 H 1.07998 * 127.31984 * 179.97438 * 5 4 3 34 34 H 1.08995 * 109.47230 * 201.27414 * 10 9 7 35 35 H 1.09001 * 109.46759 * 321.27484 * 10 9 7 36 36 H 0.97006 * 119.99667 * 180.02562 * 14 13 11 37 37 H 1.08997 * 109.47173 * 299.99825 * 20 19 9 38 38 H 1.09000 * 109.46733 * 60.00015 * 20 19 9 39 39 H 1.09002 * 109.46874 * 180.02562 * 21 20 19 40 40 H 1.09006 * 109.47535 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.47289 * 59.99585 * 22 21 20 42 42 H 1.09000 * 109.47811 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47377 * 299.99806 * 24 23 22 44 44 H 1.09002 * 109.47317 * 179.97438 * 24 23 22 45 45 H 1.09006 * 109.46565 * 180.02562 * 25 24 23 46 46 H 1.08993 * 109.47379 * 300.00028 * 26 21 20 47 47 H 1.09006 * 109.46968 * 179.97438 * 26 21 20 48 48 H 1.09007 * 109.47255 * 180.02562 * 27 25 24 49 49 H 1.08994 * 109.47911 * 59.99851 * 27 25 24 50 50 H 1.08993 * 109.46918 * 300.00074 * 28 19 9 51 51 H 1.08999 * 109.46706 * 60.00344 * 28 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 0.0005 5 6 3.5612 -0.6667 0.0003 6 6 2.2523 -1.1163 0.0061 7 6 1.7993 -2.5165 0.0143 8 8 0.6232 -2.7742 0.1868 9 7 2.6876 -3.5132 -0.1694 10 6 4.1017 -3.2022 -0.3929 11 6 4.7725 -2.9354 0.9299 12 1 4.2179 -3.0503 1.8495 13 6 6.0943 -2.5446 0.9662 14 7 6.7696 -2.4052 -0.1536 15 14 6.9259 -2.2146 2.6059 16 1 5.9563 -2.4419 3.7075 17 1 8.0830 -3.1311 2.7675 18 1 7.3994 -0.8077 2.6465 19 6 2.2393 -4.9077 -0.1457 20 6 2.9031 -5.6370 1.0240 21 6 2.4344 -7.0932 1.0491 22 6 2.8219 -7.7765 -0.2638 23 6 2.1581 -7.0472 -1.4335 24 6 0.6380 -7.0908 -1.2652 25 6 0.2505 -6.4076 0.0478 26 6 0.9143 -7.1369 1.2176 27 6 0.7192 -4.9514 0.0226 28 6 2.6272 -5.5906 -1.4587 29 1 -0.3633 0.0762 -1.0249 30 1 -0.3633 -0.9257 0.4464 31 1 -0.3633 0.8494 0.5784 32 1 4.3049 1.4167 0.0011 33 1 4.4594 -1.2662 0.0003 34 1 4.5866 -4.0468 -0.8823 35 1 4.1837 -2.3191 -1.0266 36 1 7.6997 -2.1306 -0.1280 37 1 3.9860 -5.6056 0.9043 38 1 2.6267 -5.1505 1.9594 39 1 2.9070 -7.6127 1.8828 40 1 2.4883 -8.8141 -0.2457 41 1 3.9048 -7.7454 -0.3837 42 1 2.4344 -7.5336 -2.3690 43 1 0.3040 -8.1283 -1.2473 44 1 0.1650 -6.5709 -2.0983 45 1 -0.8325 -6.4391 0.1679 46 1 0.6382 -6.6502 2.1529 47 1 0.5803 -8.1744 1.2350 48 1 0.4435 -4.4647 0.9583 49 1 0.2463 -4.4318 -0.8107 50 1 2.1543 -5.0710 -2.2920 51 1 3.7101 -5.5592 -1.5784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097101935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:20 Heat of formation + Delta-G solvation = 63.221057 kcal Electronic energy + Delta-G solvation = -33270.968565 eV Core-core repulsion = 29365.319308 eV Total energy + Delta-G solvation = -3905.649258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.84899 -41.27681 -38.48300 -35.53823 -33.09735 -32.58762 -32.34707 -32.21807 -31.34021 -29.11080 -27.51636 -26.36737 -25.65935 -25.50545 -23.31436 -22.56111 -21.49471 -21.16584 -20.67720 -19.93031 -18.64520 -17.21284 -16.68954 -16.25652 -15.87475 -15.51209 -15.20913 -14.49084 -14.44153 -14.24445 -14.14693 -13.85330 -13.67717 -13.30459 -13.04047 -13.01091 -12.75067 -12.73219 -12.60524 -12.41481 -12.32559 -12.06136 -11.93925 -11.82879 -11.18990 -11.00475 -10.92921 -10.75323 -10.60014 -10.53813 -10.45837 -10.37290 -10.36882 -9.96076 -9.83818 -9.54522 -9.37652 -9.28185 -8.70535 -8.47181 -8.35113 -8.04813 -7.69827 -6.27864 -4.32203 2.07961 3.05372 3.18950 3.28874 3.33137 3.39338 3.86318 4.02778 4.28294 4.77611 4.80920 4.95406 5.04252 5.14130 5.27173 5.37999 5.40532 5.49669 5.51703 5.53202 5.56484 5.61556 5.64957 5.70148 5.74453 5.79948 5.88323 5.92710 6.06304 6.07675 6.15998 6.20894 6.23177 6.24284 6.37854 6.39764 6.46926 6.52838 6.53855 6.57672 6.68808 6.79698 6.85506 6.91544 6.97940 7.01969 7.18296 7.44093 7.53721 7.64680 7.69631 7.95650 8.21620 8.69134 8.76850 8.95957 9.30574 10.76385 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.005759 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.854192 B = 4860.591184 C = 6787.301662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.276 5.276 3 N -0.296 5.296 4 C -0.029 4.029 5 C -0.169 4.169 6 C -0.054 4.054 7 C 0.593 3.407 8 O -0.573 6.573 9 N -0.571 5.571 10 C 0.216 3.784 11 C -0.528 4.528 12 H 0.065 0.935 13 C 0.066 3.934 14 N -0.886 5.886 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.280 1.280 19 C 0.187 3.813 20 C -0.112 4.112 21 C -0.084 4.084 22 C -0.107 4.107 23 C -0.080 4.080 24 C -0.106 4.106 25 C -0.097 4.097 26 C -0.106 4.106 27 C -0.087 4.087 28 C -0.118 4.118 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.176 0.824 33 H 0.231 0.769 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.268 0.732 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.054 0.946 48 H 0.084 0.916 49 H 0.071 0.929 50 H 0.059 0.941 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 -6.622 -1.602 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.065 5.065 3 N -0.130 5.130 4 C -0.205 4.205 5 C -0.196 4.196 6 C -0.179 4.179 7 C 0.382 3.618 8 O -0.457 6.457 9 N -0.298 5.298 10 C 0.097 3.903 11 C -0.567 4.567 12 H 0.083 0.917 13 C -0.138 4.138 14 N -0.523 5.523 15 Si 0.719 3.281 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.205 1.205 19 C 0.103 3.897 20 C -0.150 4.150 21 C -0.103 4.103 22 C -0.144 4.144 23 C -0.099 4.099 24 C -0.144 4.144 25 C -0.116 4.116 26 C -0.144 4.144 27 C -0.124 4.124 28 C -0.156 4.156 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.099 0.901 32 H 0.193 0.807 33 H 0.247 0.753 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.102 0.898 49 H 0.089 0.911 50 H 0.078 0.922 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.011 -5.807 -1.607 11.685 hybrid contribution 1.278 -0.241 0.911 1.587 sum -8.733 -6.048 -0.697 10.646 Atomic orbital electron populations 1.22191 0.74079 1.05617 1.03383 1.45426 1.06999 1.02158 1.51915 1.72997 1.04874 1.14118 1.20971 1.23632 0.92768 0.96328 1.07813 1.24792 0.99433 0.95066 1.00277 1.21413 0.91551 0.89330 1.15645 1.16905 0.84924 0.83377 0.76626 1.90686 1.17621 1.83530 1.53881 1.47963 1.10360 1.03991 1.67501 1.20081 0.74505 0.98381 0.97379 1.21445 0.95973 1.46267 0.92988 0.91675 1.24913 0.96948 0.95146 0.96802 1.69927 1.10355 1.46156 1.25896 0.86502 0.79500 0.78232 0.83846 1.19616 1.20820 1.20535 1.20257 0.94601 0.80298 0.94586 1.21851 1.01737 0.93452 0.97966 1.21062 0.95526 0.96376 0.97296 1.21538 1.00265 0.98179 0.94455 1.21017 0.95203 0.95603 0.98101 1.21544 0.95519 0.99749 0.97576 1.21334 0.99072 0.96691 0.94503 1.21539 0.95221 0.99447 0.98174 1.22093 0.93023 0.92797 1.04533 1.21914 1.01850 0.94732 0.97127 0.91053 0.86936 0.90119 0.80685 0.75325 0.94097 0.92728 0.92212 0.90048 0.92039 0.91489 0.92475 0.91796 0.91494 0.92612 0.92358 0.91746 0.92272 0.92724 0.89799 0.91092 0.92190 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 11.05 59.85 0.66 2.00 16 2 N -0.28 -5.39 3.75 -63.88 -0.24 -5.63 16 3 N -0.30 -5.93 11.90 30.59 0.36 -5.56 16 4 C -0.03 -0.59 12.03 -17.43 -0.21 -0.80 16 5 C -0.17 -3.71 8.16 -38.99 -0.32 -4.03 16 6 C -0.05 -1.14 6.78 -82.06 -0.56 -1.70 16 7 C 0.59 12.42 7.48 -12.64 -0.09 12.33 16 8 O -0.57 -11.72 9.80 5.25 0.05 -11.66 16 9 N -0.57 -11.51 2.38 -161.53 -0.38 -11.90 16 10 C 0.22 4.79 3.96 -5.19 -0.02 4.77 16 11 C -0.53 -12.58 6.16 -34.44 -0.21 -12.79 16 12 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.07 1.60 4.63 -17.82 -0.08 1.51 16 14 N -0.89 -22.31 13.16 55.43 0.73 -21.58 16 15 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 C 0.19 3.25 0.85 -131.82 -0.11 3.14 16 20 C -0.11 -1.91 4.22 -26.73 -0.11 -2.02 16 21 C -0.08 -1.15 3.19 -90.62 -0.29 -1.44 16 22 C -0.11 -1.36 5.19 -26.73 -0.14 -1.50 16 23 C -0.08 -1.05 3.20 -90.59 -0.29 -1.34 16 24 C -0.11 -1.32 5.19 -26.73 -0.14 -1.45 16 25 C -0.10 -1.31 3.19 -90.62 -0.29 -1.60 16 26 C -0.11 -1.37 5.19 -26.73 -0.14 -1.51 16 27 C -0.09 -1.44 2.84 -26.73 -0.08 -1.52 16 28 C -0.12 -1.87 4.42 -26.70 -0.12 -1.98 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.11 1.77 5.92 -51.93 -0.31 1.46 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.18 3.01 8.06 -52.48 -0.42 2.59 16 33 H 0.23 5.42 2.54 -52.49 -0.13 5.28 16 34 H 0.04 0.94 6.29 -51.93 -0.33 0.61 16 35 H 0.06 1.30 5.16 -51.93 -0.27 1.04 16 36 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 37 H 0.08 1.54 7.39 -51.93 -0.38 1.15 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 1.57 6.47 -51.92 -0.34 1.23 16 49 H 0.07 1.28 6.89 -51.93 -0.36 0.92 16 50 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.07 1.24 6.55 -51.93 -0.34 0.90 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -26.10 366.82 -9.42 -35.52 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -7.92 Total: 10.58 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.54 Total: -9.94 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.47 Total: -44.67 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.05 Total: -11.66 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.10 -9.42 -35.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097101935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.745 kcal (2) G-P(sol) polarization free energy of solvation -26.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds