Wall clock time and date at job start Tue Mar 31 2020 05:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35317 * 126.66805 * 2 1 4 4 C 1.42270 * 103.92037 * 180.26450 * 3 2 1 5 5 C 1.48333 * 126.93540 * 180.02562 * 4 3 2 6 6 O 1.21491 * 120.00312 * 353.37251 * 5 4 3 7 7 N 1.34781 * 119.99627 * 173.37897 * 5 4 3 8 8 C 1.46491 * 120.00362 * 4.27485 * 7 5 4 9 9 C 1.50698 * 109.47204 * 83.39256 * 8 7 5 10 10 H 1.08005 * 120.00154 * 0.02562 * 9 8 7 11 11 C 1.37884 * 120.00397 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99400 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00280 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46823 * 89.99937 * 13 11 9 15 15 H 1.48490 * 109.46863 * 210.00142 * 13 11 9 16 16 H 1.48498 * 109.46934 * 330.00517 * 13 11 9 17 17 C 1.46503 * 119.99619 * 184.27840 * 7 5 4 18 18 C 1.53002 * 109.46943 * 236.14521 * 17 7 5 19 19 C 1.53004 * 109.47009 * 180.02562 * 18 17 7 20 20 C 1.52994 * 109.46934 * 60.00036 * 19 18 17 21 21 C 1.52998 * 109.47328 * 299.99472 * 20 19 18 22 22 C 1.53001 * 109.47385 * 300.00471 * 21 20 19 23 23 C 1.53004 * 109.46997 * 59.99746 * 22 21 20 24 24 C 1.53002 * 109.47175 * 299.99981 * 23 22 21 25 25 C 1.53002 * 109.47059 * 356.14091 * 17 7 5 26 26 C 1.52992 * 109.47330 * 116.14187 * 17 7 5 27 27 N 1.30986 * 106.12448 * 0.02562 * 4 3 2 28 28 O 1.20903 * 111.44217 * 359.97438 * 27 4 3 29 29 H 1.08998 * 109.47018 * 179.70782 * 1 2 3 30 30 H 1.08998 * 109.46771 * 299.70583 * 1 2 3 31 31 H 1.08997 * 109.47121 * 59.70437 * 1 2 3 32 32 H 1.07992 * 128.03583 * 0.22969 * 3 2 1 33 33 H 1.09002 * 109.47358 * 203.39395 * 8 7 5 34 34 H 1.08999 * 109.47100 * 323.39677 * 8 7 5 35 35 H 0.96995 * 119.99549 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.46812 * 299.99805 * 18 17 7 37 37 H 1.08998 * 109.47206 * 59.99819 * 18 17 7 38 38 H 1.09006 * 109.46774 * 179.97438 * 19 18 17 39 39 H 1.09005 * 109.47173 * 179.97438 * 20 19 18 40 40 H 1.08990 * 109.47697 * 59.99987 * 20 19 18 41 41 H 1.08998 * 109.47537 * 179.97438 * 21 20 19 42 42 H 1.08993 * 109.47031 * 299.99825 * 22 21 20 43 43 H 1.09000 * 109.47485 * 179.97438 * 22 21 20 44 44 H 1.09004 * 109.47291 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47206 * 179.97438 * 24 23 22 46 46 H 1.08996 * 109.46847 * 300.00515 * 24 23 22 47 47 H 1.08998 * 109.47315 * 300.00319 * 25 17 7 48 48 H 1.09000 * 109.47234 * 60.00178 * 25 17 7 49 49 H 1.08999 * 109.47740 * 300.00083 * 26 17 7 50 50 H 1.09004 * 109.47060 * 59.99806 * 26 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6271 0.5353 -0.0064 5 6 4.9076 1.2840 -0.0085 6 8 4.9041 2.4932 -0.1261 7 7 6.0750 0.6228 0.1199 8 6 6.0863 -0.8413 0.1673 9 6 6.0566 -1.3896 -1.2360 10 1 6.0322 -0.7149 -2.0791 11 6 6.0616 -2.7527 -1.4440 12 7 6.0918 -3.5742 -0.4174 13 14 6.0255 -3.4324 -3.1836 14 1 7.4156 -3.6022 -3.6775 15 1 5.3347 -4.7468 -3.1871 16 1 5.2976 -2.4881 -4.0689 17 6 7.3328 1.3684 0.2120 18 6 8.2858 0.8989 -0.8890 19 6 9.5996 1.6771 -0.7924 20 6 10.2392 1.4301 0.5753 21 6 9.2863 1.8996 1.6763 22 6 9.0074 3.3944 1.5062 23 6 8.3676 3.6414 0.1384 24 6 9.3206 3.1718 -0.9626 25 6 7.0533 2.8630 0.0414 26 6 7.9727 1.1221 1.5797 27 7 3.4760 -0.7658 -0.0100 28 8 2.3072 -1.0751 -0.0063 29 1 -0.3633 -1.0276 -0.0052 30 1 -0.3633 0.5093 0.8926 31 1 -0.3633 0.5184 -0.8873 32 1 2.0302 2.1270 0.0034 33 1 6.9909 -1.1816 0.6713 34 1 5.2115 -1.1938 0.7137 35 1 6.0949 -4.5331 -0.5636 36 1 8.4848 -0.1659 -0.7675 37 1 7.8299 1.0744 -1.8634 38 1 10.2787 1.3423 -1.5766 39 1 11.1754 1.9841 0.6440 40 1 10.4379 0.3653 0.6965 41 1 9.7417 1.7232 2.6507 42 1 9.9433 3.9487 1.5750 43 1 8.3281 3.7288 2.2903 44 1 8.1693 4.7063 0.0170 45 1 8.8647 3.3474 -1.9370 46 1 10.2566 3.7262 -0.8937 47 1 6.5974 3.0385 -0.9329 48 1 6.3744 3.1975 0.8258 49 1 7.2938 1.4565 2.3641 50 1 8.1717 0.0573 1.7012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097101937.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:01 Heat of formation + Delta-G solvation = 32.317012 kcal Electronic energy + Delta-G solvation = -32979.586080 eV Core-core repulsion = 28974.878061 eV Total energy + Delta-G solvation = -4004.708020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.39626 -41.36472 -38.63300 -35.19544 -33.65053 -32.96163 -32.50281 -32.30376 -32.18957 -30.37931 -27.47886 -27.10628 -25.61526 -25.44053 -24.26544 -22.87264 -22.01238 -21.23483 -21.12993 -20.41037 -18.30894 -17.21487 -17.15574 -16.76203 -16.33322 -15.81781 -15.57399 -14.56289 -14.42588 -14.20791 -14.10194 -13.83296 -13.64047 -13.44458 -13.35852 -13.15628 -13.00277 -12.73454 -12.67818 -12.54546 -12.25789 -12.15621 -12.07947 -11.94742 -11.44764 -11.08593 -10.91215 -10.85531 -10.70873 -10.51293 -10.45777 -10.34462 -10.30015 -10.09614 -9.85901 -9.75800 -9.72374 -9.28975 -9.23702 -8.89660 -8.51001 -8.34605 -7.63203 -6.03932 -4.06428 1.89612 2.20513 3.28343 3.35349 3.38777 3.48151 3.70661 3.93120 4.42819 4.72047 4.81512 4.84435 4.89164 5.04905 5.31123 5.34048 5.39020 5.42616 5.46362 5.54158 5.54965 5.57109 5.58677 5.62786 5.67053 5.70107 5.73879 5.83576 5.90202 5.96279 6.02122 6.09735 6.11851 6.24049 6.26359 6.27338 6.36998 6.42155 6.44041 6.52559 6.58211 6.61351 6.73123 6.87858 6.92310 7.03357 7.05114 7.42232 7.64771 7.88133 8.20666 8.28098 8.70377 8.95355 8.99573 9.56961 11.04124 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010166 B = 0.005255 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.621484 B = 5327.023337 C = 7205.294126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.065 4.065 3 C -0.190 4.190 4 C -0.035 4.035 5 C 0.594 3.406 6 O -0.555 6.555 7 N -0.571 5.571 8 C 0.230 3.770 9 C -0.514 4.514 10 H 0.053 0.947 11 C 0.071 3.929 12 N -0.887 5.887 13 Si 0.888 3.112 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.276 1.276 17 C 0.185 3.815 18 C -0.109 4.109 19 C -0.084 4.084 20 C -0.107 4.107 21 C -0.080 4.080 22 C -0.106 4.106 23 C -0.096 4.096 24 C -0.107 4.107 25 C -0.088 4.088 26 C -0.117 4.117 27 N -0.259 5.259 28 O 0.116 5.884 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.170 0.830 33 H 0.035 0.965 34 H 0.060 0.940 35 H 0.262 0.738 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 10.301 3.566 10.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.127 4.127 3 C -0.212 4.212 4 C -0.194 4.194 5 C 0.380 3.620 6 O -0.436 6.436 7 N -0.299 5.299 8 C 0.111 3.889 9 C -0.553 4.553 10 H 0.071 0.929 11 C -0.131 4.131 12 N -0.526 5.526 13 Si 0.716 3.284 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.100 3.900 18 C -0.147 4.147 19 C -0.103 4.103 20 C -0.145 4.145 21 C -0.099 4.099 22 C -0.143 4.143 23 C -0.115 4.115 24 C -0.144 4.144 25 C -0.125 4.125 26 C -0.155 4.155 27 N 0.043 4.957 28 O 0.038 5.962 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.187 0.813 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.077 0.923 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.313 9.697 3.555 10.333 hybrid contribution -0.349 0.026 -1.094 1.148 sum -0.662 9.723 2.461 10.052 Atomic orbital electron populations 1.20227 0.84564 1.04255 1.03463 1.24376 0.96263 0.86481 1.05605 1.22251 0.90389 1.00718 1.07878 1.23549 0.96393 0.90283 1.09197 1.17007 0.82068 0.85698 0.77201 1.90733 1.86508 1.13229 1.53087 1.48271 1.03964 1.10034 1.67658 1.19762 0.99129 0.71762 0.98282 1.21235 1.50988 0.91416 0.91657 0.92854 1.24786 0.95023 0.96750 0.96555 1.69914 1.50120 1.03016 1.29538 0.86664 0.78039 0.78491 0.85242 1.20740 1.21111 1.20136 1.20277 0.83434 0.91755 0.94524 1.21815 0.93676 1.00884 0.98327 1.21074 0.97033 0.95215 0.96975 1.21541 0.97415 1.00985 0.94523 1.20996 0.95533 0.95017 0.98336 1.21538 0.99881 0.95691 0.97229 1.21332 0.96261 0.99399 0.94526 1.21546 0.98635 0.95672 0.98561 1.22092 0.94033 0.92126 1.04286 1.21884 0.96068 1.00776 0.96808 1.74993 0.94283 1.14842 1.11614 1.84971 1.12108 1.33539 1.65612 0.90118 0.89727 0.89736 0.81290 0.94701 0.92262 0.92865 0.90041 0.91898 0.91449 0.92441 0.91826 0.91504 0.92550 0.92323 0.91674 0.92253 0.92691 0.90625 0.90363 0.92309 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.45 36.01 0.38 -0.26 16 2 C -0.06 -0.98 7.47 -35.35 -0.26 -1.25 16 3 C -0.19 -3.22 10.93 -39.07 -0.43 -3.65 16 4 C -0.04 -0.75 6.85 -82.53 -0.57 -1.31 16 5 C 0.59 13.14 7.55 -12.10 -0.09 13.05 16 6 O -0.56 -12.22 12.17 5.37 0.07 -12.15 16 7 N -0.57 -12.50 2.37 -161.11 -0.38 -12.89 16 8 C 0.23 5.68 3.92 -5.20 -0.02 5.66 16 9 C -0.51 -13.71 7.53 -34.44 -0.26 -13.97 16 10 H 0.05 1.49 7.81 -52.48 -0.41 1.08 16 11 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 12 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 13 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.18 3.47 0.83 -131.82 -0.11 3.36 16 18 C -0.11 -2.02 3.96 -26.73 -0.11 -2.13 16 19 C -0.08 -1.25 3.19 -90.62 -0.29 -1.54 16 20 C -0.11 -1.46 5.19 -26.74 -0.14 -1.60 16 21 C -0.08 -1.11 3.19 -90.64 -0.29 -1.40 16 22 C -0.11 -1.38 5.19 -26.73 -0.14 -1.52 16 23 C -0.10 -1.38 3.20 -90.59 -0.29 -1.67 16 24 C -0.11 -1.47 5.19 -26.73 -0.14 -1.61 16 25 C -0.09 -1.56 2.84 -26.70 -0.08 -1.64 16 26 C -0.12 -1.98 4.52 -26.76 -0.12 -2.11 16 27 N -0.26 -5.83 8.05 33.29 0.27 -5.57 16 28 O 0.12 2.24 11.18 17.23 0.19 2.43 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 33 H 0.04 0.90 6.49 -51.93 -0.34 0.57 16 34 H 0.06 1.58 5.39 -51.93 -0.28 1.30 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.08 1.70 7.12 -51.93 -0.37 1.33 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.08 1.51 6.83 -51.93 -0.35 1.15 16 48 H 0.08 1.50 6.55 -51.93 -0.34 1.16 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.07 1.28 6.85 -51.93 -0.36 0.93 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -30.02 372.78 -9.49 -39.51 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.92 Total: 2.61 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -3.05 Total: -11.72 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.62 Total: -42.79 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.26 Total: -9.72 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.02 -9.49 -39.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097101937.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.828 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds