Wall clock time and date at job start Tue Mar 31 2020 05:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34260 * 126.52282 * 2 1 4 4 C 1.34043 * 108.22921 * 179.97438 * 3 2 1 5 5 N 1.29937 * 109.24354 * 0.02562 * 4 3 2 6 6 C 1.36069 * 108.47639 * 359.97438 * 5 4 3 7 7 C 1.47422 * 126.44909 * 180.26131 * 6 5 4 8 8 O 1.21616 * 119.99840 * 174.18980 * 7 6 5 9 9 N 1.34771 * 120.00141 * 354.19401 * 7 6 5 10 10 C 1.46504 * 119.99694 * 5.27261 * 9 7 6 11 11 C 1.50703 * 109.47376 * 82.84416 * 10 9 7 12 12 H 1.08002 * 119.99530 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00149 * 179.97438 * 11 10 9 14 14 N 1.31505 * 119.99983 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99910 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46901 * 90.00078 * 15 13 11 17 17 H 1.48500 * 109.47198 * 210.00147 * 15 13 11 18 18 H 1.48506 * 109.47230 * 330.00442 * 15 13 11 19 19 C 1.46499 * 120.00222 * 185.26920 * 9 7 6 20 20 C 1.52997 * 109.47411 * 240.81584 * 19 9 7 21 21 C 1.52996 * 109.47272 * 179.97438 * 20 19 9 22 22 C 1.53000 * 109.46915 * 59.99898 * 21 20 19 23 23 C 1.52997 * 109.47234 * 300.00125 * 22 21 20 24 24 C 1.52997 * 109.47153 * 299.99939 * 23 22 21 25 25 C 1.53000 * 109.47001 * 59.99918 * 24 23 22 26 26 C 1.52997 * 109.47158 * 300.00152 * 21 20 19 27 27 C 1.52996 * 109.46915 * 60.00158 * 25 24 23 28 28 C 1.52996 * 109.47272 * 60.00094 * 23 22 21 29 29 H 1.09003 * 109.47428 * 269.99674 * 1 2 3 30 30 H 1.08994 * 109.47258 * 29.99863 * 1 2 3 31 31 H 1.09001 * 109.47147 * 149.99777 * 1 2 3 32 32 H 1.08001 * 125.38390 * 179.97438 * 4 3 2 33 33 H 1.09007 * 109.47011 * 202.84412 * 10 9 7 34 34 H 1.08997 * 109.47377 * 322.83893 * 10 9 7 35 35 H 0.97005 * 120.00183 * 179.97438 * 14 13 11 36 36 H 1.09000 * 109.47367 * 300.00085 * 20 19 9 37 37 H 1.09006 * 109.47014 * 60.00032 * 20 19 9 38 38 H 1.08999 * 109.47306 * 179.97438 * 21 20 19 39 39 H 1.09008 * 109.47280 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.47405 * 60.00148 * 22 21 20 41 41 H 1.09006 * 109.47014 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.47345 * 299.99870 * 24 23 22 43 43 H 1.09000 * 109.47258 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.46926 * 179.97438 * 25 24 23 45 45 H 1.08998 * 109.47280 * 300.00137 * 26 21 20 46 46 H 1.09001 * 109.47345 * 179.97438 * 26 21 20 47 47 H 1.09006 * 109.47051 * 179.97438 * 27 25 24 48 48 H 1.09007 * 109.47091 * 60.00107 * 27 25 24 49 49 H 1.09001 * 109.47247 * 179.97438 * 28 23 22 50 50 H 1.08999 * 109.46963 * 60.00224 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6582 0.0006 5 7 3.6003 -0.6410 0.0004 6 6 2.3170 -1.0936 0.0002 7 6 1.8855 -2.5032 0.0054 8 8 0.7054 -2.7774 0.1113 9 7 2.7986 -3.4879 -0.1071 10 6 4.2274 -3.1642 -0.1183 11 6 4.7177 -3.0054 1.2979 12 1 4.0332 -3.1325 2.1236 13 6 6.0398 -2.6979 1.5393 14 7 6.4675 -2.5588 2.7751 15 14 7.2236 -2.4787 0.1110 16 1 7.2284 -1.0558 -0.3141 17 1 8.5908 -2.8729 0.5363 18 1 6.7928 -3.3331 -1.0246 19 6 2.3626 -4.8821 -0.2182 20 6 2.9170 -5.6854 0.9600 21 6 2.4610 -7.1412 0.8443 22 6 2.9795 -7.7353 -0.4669 23 6 2.4251 -6.9320 -1.6451 24 6 0.8963 -6.9906 -1.6280 25 6 0.3779 -6.3965 -0.3168 26 6 0.9323 -7.1998 0.8615 27 6 0.8338 -4.9407 -0.2011 28 6 2.8810 -5.4762 -1.5294 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 4.4489 1.2979 0.0003 33 1 4.7785 -3.9687 -0.6055 34 1 4.3849 -2.2338 -0.6638 35 1 7.3978 -2.3428 2.9450 36 1 4.0061 -5.6433 0.9481 37 1 2.5472 -5.2624 1.8942 38 1 2.8564 -7.7136 1.6835 39 1 2.6551 -8.7727 -0.5491 40 1 4.0686 -7.6936 -0.4791 41 1 2.7941 -7.3556 -2.5793 42 1 0.5715 -8.0278 -1.7105 43 1 0.5014 -6.4187 -2.4677 44 1 -0.7112 -6.4379 -0.3048 45 1 0.5629 -6.7765 1.7955 46 1 0.6074 -8.2370 0.7786 47 1 0.4641 -4.5173 0.7329 48 1 0.4388 -4.3684 -1.0406 49 1 2.4864 -4.9040 -2.3691 50 1 3.9701 -5.4345 -1.5417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097101978.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:16 Heat of formation + Delta-G solvation = 1.041747 kcal Electronic energy + Delta-G solvation = -33325.478416 eV Core-core repulsion = 29319.414199 eV Total energy + Delta-G solvation = -4006.064217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.90657 -41.36361 -38.63195 -35.29160 -34.27280 -32.49756 -32.34770 -32.22662 -31.91847 -30.65933 -27.71745 -26.79248 -25.62075 -25.46189 -23.59014 -22.33712 -21.95924 -21.13382 -20.92199 -20.43209 -18.84606 -17.17338 -16.85654 -16.68618 -16.33794 -15.92671 -15.32008 -14.58854 -14.40946 -14.21147 -14.11241 -14.08540 -13.80921 -13.47868 -13.26738 -13.01524 -12.87599 -12.72355 -12.68839 -12.64320 -12.27975 -12.20552 -12.11597 -11.95486 -11.59480 -11.13001 -10.90922 -10.80757 -10.70875 -10.57798 -10.53430 -10.41677 -10.31516 -10.09129 -9.98783 -9.58299 -9.46661 -9.31639 -9.16728 -8.52288 -8.43340 -8.35354 -7.54300 -5.98911 -3.93164 1.58824 2.70641 3.02739 3.31512 3.37743 3.40021 3.71219 3.98717 4.47365 4.62060 4.80175 4.83338 4.96953 5.05355 5.24889 5.35131 5.38505 5.42349 5.51055 5.53321 5.55115 5.58900 5.63407 5.67919 5.69011 5.72283 5.81284 5.83266 5.95218 6.07988 6.10696 6.22809 6.23896 6.24562 6.25603 6.29553 6.39193 6.41752 6.46210 6.53210 6.55723 6.59811 6.76621 6.79897 6.89451 7.02098 7.06753 7.21541 7.57719 7.72513 8.07035 8.24599 8.60074 8.92732 9.05722 9.63550 11.14817 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010015 B = 0.005915 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.252459 B = 4732.907033 C = 6652.981101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.013 3.987 3 O -0.210 6.210 4 C 0.148 3.852 5 N -0.407 5.407 6 C -0.053 4.053 7 C 0.600 3.400 8 O -0.559 6.559 9 N -0.565 5.565 10 C 0.196 3.804 11 C -0.497 4.497 12 H 0.069 0.931 13 C 0.077 3.923 14 N -0.904 5.904 15 Si 0.872 3.128 16 H -0.275 1.275 17 H -0.292 1.292 18 H -0.269 1.269 19 C 0.184 3.816 20 C -0.109 4.109 21 C -0.084 4.084 22 C -0.107 4.107 23 C -0.080 4.080 24 C -0.106 4.106 25 C -0.096 4.096 26 C -0.106 4.106 27 C -0.088 4.088 28 C -0.118 4.118 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.246 0.754 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.260 0.740 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 -2.606 -8.690 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.043 4.043 3 O -0.097 6.097 4 C -0.080 4.080 5 N -0.135 5.135 6 C -0.173 4.173 7 C 0.388 3.612 8 O -0.441 6.441 9 N -0.292 5.292 10 C 0.075 3.925 11 C -0.536 4.536 12 H 0.088 0.912 13 C -0.124 4.124 14 N -0.544 5.544 15 Si 0.700 3.300 16 H -0.201 1.201 17 H -0.218 1.218 18 H -0.194 1.194 19 C 0.100 3.900 20 C -0.148 4.148 21 C -0.103 4.103 22 C -0.145 4.145 23 C -0.099 4.099 24 C -0.143 4.143 25 C -0.115 4.115 26 C -0.144 4.144 27 C -0.126 4.126 28 C -0.156 4.156 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.262 0.738 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.106 0.894 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.951 -3.074 -8.540 13.469 hybrid contribution 0.818 0.783 -0.430 1.211 sum -9.134 -2.291 -8.971 13.006 Atomic orbital electron populations 1.20411 0.83313 1.04369 1.04099 1.23543 0.94807 0.83825 1.02110 1.84289 1.18856 1.36421 1.70148 1.28179 0.84709 0.92219 1.02887 1.71331 1.20775 1.08208 1.13137 1.21636 0.88708 0.95682 1.11300 1.16787 0.84979 0.82819 0.76634 1.90735 1.17415 1.82291 1.53654 1.47870 1.08546 1.04556 1.68189 1.20285 0.75476 0.97355 0.99343 1.21126 0.95082 1.46571 0.90772 0.91247 1.24699 0.97826 0.94890 0.94961 1.69904 1.15943 1.49667 1.18856 0.86931 0.80496 0.79077 0.83509 1.20066 1.21815 1.19396 1.20285 0.94760 0.80554 0.94431 1.21817 1.02254 0.92897 0.97786 1.21073 0.95269 0.96743 0.97244 1.21545 1.00265 0.98185 0.94478 1.21006 0.95526 0.95295 0.98091 1.21541 0.95175 1.00042 0.97591 1.21319 0.99114 0.96630 0.94443 1.21535 0.95409 0.99124 0.98290 1.22093 0.92920 0.92945 1.04609 1.21906 1.01303 0.95194 0.97239 0.89652 0.91054 0.87529 0.73848 0.95823 0.91503 0.92967 0.90138 0.91730 0.91379 0.92430 0.91904 0.91572 0.92572 0.92395 0.91658 0.92138 0.92727 0.89443 0.91288 0.92273 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 9.82 36.01 0.35 -0.50 16 2 C 0.01 0.23 7.44 -35.08 -0.26 -0.03 16 3 O -0.21 -3.37 10.73 6.52 0.07 -3.30 16 4 C 0.15 2.45 13.19 51.96 0.69 3.13 16 5 N -0.41 -8.46 7.18 -11.48 -0.08 -8.54 16 6 C -0.05 -1.07 6.65 -83.02 -0.55 -1.62 16 7 C 0.60 12.57 7.48 -12.52 -0.09 12.48 16 8 O -0.56 -11.29 10.12 5.26 0.05 -11.23 16 9 N -0.56 -11.89 2.38 -161.43 -0.38 -12.27 16 10 C 0.20 4.56 3.06 -5.19 -0.02 4.54 16 11 C -0.50 -13.38 8.10 -34.44 -0.28 -13.66 16 12 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 13 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 14 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 15 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 19 C 0.18 3.34 0.85 -131.82 -0.11 3.23 16 20 C -0.11 -2.02 4.11 -26.73 -0.11 -2.13 16 21 C -0.08 -1.25 3.19 -90.62 -0.29 -1.54 16 22 C -0.11 -1.43 5.19 -26.73 -0.14 -1.57 16 23 C -0.08 -1.08 3.19 -90.62 -0.29 -1.36 16 24 C -0.11 -1.33 5.19 -26.73 -0.14 -1.47 16 25 C -0.10 -1.33 3.19 -90.62 -0.29 -1.62 16 26 C -0.11 -1.44 5.19 -26.73 -0.14 -1.57 16 27 C -0.09 -1.49 2.84 -26.73 -0.08 -1.57 16 28 C -0.12 -1.92 4.45 -26.73 -0.12 -2.03 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.11 1.46 6.62 -51.93 -0.34 1.12 16 32 H 0.25 2.93 8.06 -52.49 -0.42 2.51 16 33 H 0.02 0.56 5.46 -51.92 -0.28 0.27 16 34 H 0.07 1.59 4.69 -51.93 -0.24 1.35 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.68 7.29 -51.93 -0.38 1.30 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.67 6.45 -51.93 -0.33 1.34 16 48 H 0.07 1.22 6.91 -51.93 -0.36 0.87 16 49 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.07 1.19 6.64 -51.93 -0.34 0.84 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -31.20 365.53 -8.49 -39.69 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.80 Total: 5.31 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.96 Total: -5.25 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.31 Total: -47.07 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.12 Total: -14.53 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.20 -8.49 -39.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097101978.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.731 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds