Wall clock time and date at job start Tue Mar 31 2020 05:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47236 * 2 1 4 4 C 1.50694 * 109.47549 * 120.00523 * 2 1 3 5 5 H 1.08005 * 120.00250 * 120.00062 * 4 2 1 6 6 C 1.37874 * 120.00066 * 299.99664 * 4 2 1 7 7 N 1.31515 * 119.99812 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00136 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47033 * 90.00590 * 8 6 4 10 10 H 1.48499 * 109.47590 * 210.00226 * 8 6 4 11 11 H 1.48498 * 109.47315 * 330.00793 * 8 6 4 12 12 N 1.46505 * 109.47029 * 240.00776 * 2 1 3 13 13 C 1.34772 * 120.00248 * 84.99294 * 12 2 1 14 14 O 1.21289 * 119.99990 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99986 * 180.02562 * 13 12 2 16 16 S 1.81405 * 109.46754 * 180.02562 * 15 13 12 17 17 C 1.76199 * 102.99690 * 180.02562 * 16 15 13 18 18 C 1.38980 * 120.06767 * 359.72234 * 17 16 15 19 19 C 1.38064 * 119.93447 * 179.76945 * 18 17 16 20 20 C 1.38420 * 120.06697 * 0.50579 * 19 18 17 21 21 Cl 1.73598 * 119.93671 * 179.76626 * 20 19 18 22 22 C 1.38378 * 120.13141 * 359.74922 * 20 19 18 23 23 C 1.38109 * 120.06883 * 359.97438 * 22 20 19 24 24 N 1.48004 * 120.03374 * 180.02562 * 23 22 20 25 25 O 1.21797 * 120.00194 * 359.97438 * 24 23 22 26 26 O 1.21796 * 120.00055 * 179.97438 * 24 23 22 27 27 H 1.09005 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46816 * 299.99119 * 1 2 3 29 29 H 1.08998 * 109.47934 * 59.99504 * 1 2 3 30 30 H 0.97008 * 119.99891 * 179.97438 * 7 6 4 31 31 H 0.97004 * 119.99586 * 264.99976 * 12 2 1 32 32 H 1.09000 * 109.47022 * 60.00522 * 15 13 12 33 33 H 1.08998 * 109.46894 * 300.00078 * 15 13 12 34 34 H 1.08003 * 120.03534 * 0.02636 * 18 17 16 35 35 H 1.08003 * 119.96938 * 180.23216 * 19 18 17 36 36 H 1.08001 * 119.96648 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6534 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 0.9429 0.8295 2.6034 8 14 2.3216 -1.1206 4.0077 9 1 3.6300 -0.5461 4.4121 10 1 1.3435 -0.9497 5.1119 11 1 2.4862 -2.5664 3.7116 12 7 2.0183 -0.6905 -1.1963 13 6 2.1469 -0.0181 -2.3572 14 8 1.8588 1.1589 -2.4115 15 6 2.6487 -0.7285 -3.5879 16 16 2.7103 0.4375 -4.9762 17 6 3.3087 -0.5565 -6.3023 18 6 3.6030 -1.8980 -6.0892 19 6 4.0673 -2.6755 -7.1313 20 6 4.2496 -2.1177 -8.3850 21 17 4.8393 -3.0970 -9.6915 22 6 3.9625 -0.7811 -8.5990 23 6 3.4924 0.0004 -7.5618 24 7 3.1850 1.4298 -7.7917 25 8 3.3470 1.9176 -8.8959 26 8 2.7701 2.1183 -6.8767 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3635 0.5139 -0.8899 30 1 0.7084 1.1606 3.4845 31 1 2.2490 -1.6317 -1.1528 32 1 1.9757 -1.5503 -3.8328 33 1 3.6478 -1.1210 -3.3988 34 1 3.4648 -2.3329 -5.1103 35 1 4.2926 -3.7189 -6.9672 36 1 4.1054 -0.3487 -9.5783 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097107268.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:10 Heat of formation + Delta-G solvation = -14.860425 kcal Electronic energy + Delta-G solvation = -24026.590381 eV Core-core repulsion = 20052.657332 eV Total energy + Delta-G solvation = -3973.933049 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 344.043 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.35789 -39.83522 -39.05067 -37.15852 -36.71976 -34.98515 -32.71436 -32.52655 -31.92287 -30.43688 -28.21107 -26.93625 -25.35118 -23.83689 -23.06680 -21.49290 -20.01772 -19.60081 -18.84156 -18.08796 -17.72114 -17.19565 -16.52334 -16.29189 -16.03556 -15.46216 -15.34319 -14.94463 -14.40401 -14.38207 -14.15272 -13.22790 -13.13910 -12.90544 -12.58492 -12.48365 -12.41064 -11.94778 -11.76326 -11.68110 -11.44149 -11.27784 -11.16584 -11.05917 -10.85356 -10.41155 -10.33135 -10.24196 -10.21597 -10.07609 -9.40066 -9.16850 -8.65950 -8.14397 -7.88126 -6.21355 -4.31752 -0.56682 0.13593 0.79841 0.98411 1.00767 1.51783 1.96459 2.54311 3.03669 3.18345 3.25207 3.26490 3.73034 3.78273 4.08239 4.19922 4.26820 4.27969 4.76072 4.78896 4.81608 4.92978 5.08644 5.11205 5.21181 5.27419 5.54151 6.15445 6.70893 6.84159 7.02493 7.26027 7.39042 7.46454 7.56831 7.78431 8.03870 8.42714 8.62425 8.87179 9.35741 10.84543 Molecular weight = 344.04amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.002280 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.881499 B =12280.230424 C =13498.799710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.051 0.949 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.881 5.881 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.700 5.700 13 C 0.520 3.480 14 O -0.533 6.533 15 C -0.209 4.209 16 S 0.131 5.869 17 C -0.059 4.059 18 C -0.132 4.132 19 C -0.033 4.033 20 C -0.060 4.060 21 Cl -0.044 7.044 22 C -0.022 4.022 23 C -0.035 4.035 24 N 0.031 4.969 25 O -0.167 6.167 26 O -0.132 6.132 27 H 0.027 0.973 28 H 0.092 0.908 29 H 0.016 0.984 30 H 0.266 0.734 31 H 0.390 0.610 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.850 -10.495 -21.562 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.069 0.931 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.518 5.518 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.348 5.348 13 C 0.302 3.698 14 O -0.412 6.412 15 C -0.360 4.360 16 S 0.383 5.617 17 C -0.176 4.176 18 C -0.157 4.157 19 C -0.055 4.055 20 C -0.092 4.092 21 Cl -0.015 7.015 22 C -0.043 4.043 23 C -0.128 4.128 24 N 0.545 4.455 25 O -0.378 6.378 26 O -0.346 6.346 27 H 0.046 0.954 28 H 0.111 0.889 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.223 0.777 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.174 0.826 35 H 0.172 0.828 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.348 -8.994 -21.190 23.879 hybrid contribution 0.792 -2.218 0.657 2.445 sum 7.139 -11.211 -20.533 24.459 Atomic orbital electron populations 1.22093 0.98206 0.99220 1.01173 1.18837 0.91195 0.94081 0.79534 0.93080 1.21167 1.32810 1.13388 0.90213 0.92045 1.24891 0.94719 0.94948 0.99111 1.69898 1.35495 1.22346 1.24074 0.86426 0.78668 0.79750 0.82113 1.20496 1.20987 1.19867 1.46490 1.64611 1.13618 1.10052 1.19266 0.79485 0.87323 0.83696 1.90749 1.50724 1.15358 1.84333 1.24552 1.06963 1.04824 0.99672 1.88169 1.72476 1.06335 0.94721 1.22588 0.98103 0.98860 0.98085 1.21238 1.02599 0.90912 1.00980 1.21397 0.92821 1.01159 0.90103 1.20526 1.06048 0.91585 0.91010 1.98412 1.86587 1.69251 1.47221 1.20712 0.92732 0.91588 0.99291 1.20227 1.14769 0.82696 0.95113 1.43427 0.98847 1.02520 1.00672 1.94530 1.57214 1.75168 1.10904 1.94540 1.46116 1.58520 1.35454 0.95400 0.88938 0.96489 0.92415 0.77721 0.86561 0.86509 0.82598 0.82798 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.26 37.16 0.34 -3.19 16 2 C 0.26 6.40 2.56 -69.08 -0.18 6.22 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -13.57 8.73 -34.44 -0.30 -13.87 16 5 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.14 11.32 55.43 0.63 -23.51 16 8 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 N -0.70 -13.17 5.07 -54.93 -0.28 -13.44 16 13 C 0.52 9.32 7.81 -10.99 -0.09 9.23 16 14 O -0.53 -11.99 15.53 5.55 0.09 -11.90 16 15 C -0.21 -2.45 4.82 36.01 0.17 -2.28 16 16 S 0.13 1.75 17.88 -107.50 -1.92 -0.17 16 17 C -0.06 -0.61 6.11 -39.05 -0.24 -0.85 16 18 C -0.13 -0.95 9.36 -39.37 -0.37 -1.32 16 19 C -0.03 -0.20 9.82 -39.58 -0.39 -0.59 16 20 C -0.06 -0.42 6.32 -39.46 -0.25 -0.67 16 21 Cl -0.04 -0.28 28.95 -51.86 -1.50 -1.78 16 22 C -0.02 -0.19 9.33 -39.58 -0.37 -0.56 16 23 C -0.03 -0.38 6.87 -79.74 -0.55 -0.93 16 24 N 0.03 0.43 4.45 34.06 0.15 0.58 16 25 O -0.17 -2.29 18.45 -29.46 -0.54 -2.84 16 26 O -0.13 -2.07 15.81 -29.46 -0.47 -2.53 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.39 6.04 8.54 -40.82 -0.35 5.69 16 32 H 0.12 1.01 7.76 -51.92 -0.40 0.61 16 33 H 0.12 1.04 7.74 -51.92 -0.40 0.64 16 34 H 0.16 0.78 5.88 -52.48 -0.31 0.47 16 35 H 0.15 0.49 8.06 -52.48 -0.42 0.06 16 36 H 0.16 1.20 7.61 -52.49 -0.40 0.80 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -31.21 346.17 -9.33 -40.54 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -3.38 Total: 2.08 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.30 Total: -7.16 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.50 Total: -36.37 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.92 Total: -17.27 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.92 Total: -0.17 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.50 Total: -1.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.21 -9.33 -40.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097107268.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.678 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds