Wall clock time and date at job start Tue Mar 31 2020 05:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47421 * 2 1 4 4 C 1.50699 * 109.46879 * 239.99952 * 2 1 3 5 5 H 1.07999 * 120.00258 * 275.00336 * 4 2 1 6 6 C 1.37879 * 119.99979 * 95.00694 * 4 2 1 7 7 N 1.31518 * 119.99891 * 184.91600 * 6 4 2 8 8 Si 1.86795 * 119.99926 * 4.91274 * 6 4 2 9 9 H 1.48500 * 109.47064 * 84.83844 * 8 6 4 10 10 H 1.48497 * 109.46930 * 204.83448 * 8 6 4 11 11 H 1.48505 * 109.47237 * 324.83517 * 8 6 4 12 12 N 1.46504 * 109.47411 * 120.00269 * 2 1 3 13 13 C 1.34776 * 119.99868 * 274.99955 * 12 2 1 14 14 O 1.21282 * 120.00109 * 359.97438 * 13 12 2 15 15 C 1.50704 * 120.00153 * 180.27208 * 13 12 2 16 16 S 1.81395 * 109.47067 * 179.72508 * 15 13 12 17 17 C 1.76207 * 102.99666 * 180.02562 * 16 15 13 18 18 C 1.38979 * 120.06632 * 359.72371 * 17 16 15 19 19 C 1.38065 * 119.92983 * 179.77115 * 18 17 16 20 20 C 1.38420 * 120.06775 * 0.50308 * 19 18 17 21 21 Cl 1.73601 * 119.93645 * 179.76687 * 20 19 18 22 22 C 1.38380 * 120.13699 * 359.74552 * 20 19 18 23 23 C 1.38106 * 120.06231 * 0.02562 * 22 20 19 24 24 N 1.48006 * 120.03356 * 180.02562 * 23 22 20 25 25 O 1.21803 * 119.99964 * 359.97438 * 24 23 22 26 26 O 1.21801 * 120.00060 * 179.97438 * 24 23 22 27 27 H 1.09001 * 109.46714 * 55.03167 * 1 2 3 28 28 H 1.08992 * 109.47214 * 175.03577 * 1 2 3 29 29 H 1.09003 * 109.46714 * 295.03911 * 1 2 3 30 30 H 0.97000 * 120.00012 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00045 * 94.99296 * 12 2 1 32 32 H 1.08999 * 109.46703 * 299.72785 * 15 13 12 33 33 H 1.08996 * 109.46686 * 59.72255 * 15 13 12 34 34 H 1.07995 * 120.03389 * 359.97438 * 18 17 16 35 35 H 1.07993 * 119.97070 * 180.25134 * 19 18 17 36 36 H 1.07999 * 119.97127 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3603 0.0121 -2.3580 7 7 2.7059 -0.6132 -3.4622 8 14 2.3137 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7822 10 1 2.1060 2.3990 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0183 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6554 -0.7272 3.5861 16 16 2.7226 0.4400 4.9730 17 6 3.3297 -0.5521 6.2967 18 6 3.6140 -1.8960 6.0860 19 6 4.0940 -2.6696 7.1240 20 6 4.2822 -2.1104 8.3761 21 17 4.8802 -3.0877 9.6804 22 6 3.9952 -0.7738 8.5904 23 6 3.5192 0.0063 7.5548 24 7 3.2130 1.4360 7.7846 25 8 3.3802 1.9250 8.8875 26 8 2.7937 2.1234 6.8707 27 1 -0.3633 0.5890 -0.8422 28 1 -0.3633 -1.0237 -0.0889 29 1 -0.3633 0.4350 0.9311 30 1 2.9363 -0.1049 -4.2556 31 1 2.2490 -1.6318 1.1526 32 1 1.9841 -1.5491 3.8350 33 1 3.6537 -1.1194 3.3924 34 1 3.4627 -2.3340 5.1105 35 1 4.3190 -3.7130 6.9599 36 1 4.1434 -0.3401 9.5683 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097107269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:15 Heat of formation + Delta-G solvation = -15.237774 kcal Electronic energy + Delta-G solvation = -24123.354655 eV Core-core repulsion = 20149.405243 eV Total energy + Delta-G solvation = -3973.949412 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 344.043 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.38982 -39.86098 -39.19844 -37.17629 -36.75342 -35.09327 -32.71758 -32.52116 -31.96987 -30.85217 -28.72117 -26.96993 -25.41674 -23.86204 -23.09855 -21.40810 -20.03329 -19.73955 -18.87739 -18.14455 -17.75431 -17.43827 -16.55128 -16.37197 -16.16827 -15.78939 -15.41689 -14.95206 -14.43612 -14.38634 -14.05434 -13.29609 -13.20590 -13.00301 -12.63094 -12.60209 -12.49415 -12.37389 -11.96337 -11.71818 -11.54775 -11.46954 -11.31266 -11.19218 -10.91424 -10.68997 -10.26779 -10.23893 -10.12479 -9.97164 -9.52625 -9.32628 -8.81015 -8.33131 -7.92654 -6.33674 -4.38664 -0.59588 0.11105 0.75509 0.95455 0.97892 1.49297 1.91890 2.51895 2.91877 3.20388 3.28821 3.35604 3.66767 3.70924 4.06278 4.17342 4.24072 4.25054 4.73355 4.75308 4.76902 4.85294 5.02175 5.06433 5.19158 5.23719 5.51840 6.12074 6.21773 6.40322 6.55877 6.80161 7.03113 7.21478 7.38383 7.43020 7.93753 8.36602 8.61868 8.70656 9.27392 10.77650 Molecular weight = 344.04amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.002447 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.454995 B =11437.880811 C =12487.282245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.886 5.886 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.694 5.694 13 C 0.520 3.480 14 O -0.538 6.538 15 C -0.209 4.209 16 S 0.127 5.873 17 C -0.058 4.058 18 C -0.131 4.131 19 C -0.033 4.033 20 C -0.059 4.059 21 Cl -0.043 7.043 22 C -0.023 4.023 23 C -0.034 4.034 24 N 0.031 4.969 25 O -0.166 6.166 26 O -0.133 6.133 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.030 0.970 30 H 0.269 0.731 31 H 0.395 0.605 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 -7.318 23.902 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.070 0.930 4 C -0.571 4.571 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.522 5.522 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.184 1.184 12 N -0.343 5.343 13 C 0.303 3.697 14 O -0.417 6.417 15 C -0.360 4.360 16 S 0.379 5.621 17 C -0.176 4.176 18 C -0.157 4.157 19 C -0.054 4.054 20 C -0.091 4.091 21 Cl -0.014 7.014 22 C -0.043 4.043 23 C -0.128 4.128 24 N 0.545 4.455 25 O -0.378 6.378 26 O -0.347 6.347 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.228 0.772 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.175 0.825 35 H 0.173 0.827 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.282 -5.935 23.470 24.431 hybrid contribution 0.568 -0.846 0.051 1.020 sum 3.850 -6.781 23.521 24.780 Atomic orbital electron populations 1.22224 0.98305 1.00694 0.99494 1.19214 0.91103 0.94432 0.82347 0.92952 1.20969 1.45692 0.95601 0.94870 0.90283 1.24947 0.93430 0.98778 0.95123 1.69874 1.44237 1.36358 1.01711 0.86898 0.79947 0.85583 0.77571 1.19722 1.21044 1.18363 1.46643 1.64406 1.13959 1.09307 1.19383 0.79252 0.87329 0.83781 1.90734 1.51100 1.15410 1.84445 1.24546 1.07136 1.04836 0.99475 1.88133 1.72363 1.06546 0.95040 1.22563 0.98209 0.98809 0.97998 1.21245 1.02499 0.90859 1.01071 1.21405 0.92718 1.01217 0.90099 1.20537 1.05869 0.91615 0.91075 1.98414 1.86288 1.69346 1.47349 1.20715 0.92731 0.91606 0.99291 1.20230 1.14723 0.82655 0.95166 1.43432 0.98835 1.02525 1.00659 1.94533 1.57156 1.75092 1.10989 1.94535 1.46033 1.58635 1.35513 0.92679 0.93344 0.95103 0.92082 0.77159 0.86438 0.86297 0.82550 0.82741 0.81782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.47 37.16 0.35 -2.73 16 2 C 0.23 5.17 2.22 -69.08 -0.15 5.02 16 3 H 0.05 1.30 4.73 -51.93 -0.25 1.05 16 4 C -0.53 -13.60 9.05 -34.44 -0.31 -13.91 16 5 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -25.24 13.96 55.43 0.77 -24.46 16 8 Si 0.87 20.92 26.99 -169.99 -4.59 16.33 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.26 -6.12 6.82 56.52 0.39 -5.74 16 12 N -0.69 -12.49 5.07 -54.93 -0.28 -12.77 16 13 C 0.52 8.88 7.81 -10.98 -0.09 8.79 16 14 O -0.54 -11.46 15.53 5.56 0.09 -11.37 16 15 C -0.21 -2.35 4.82 36.01 0.17 -2.18 16 16 S 0.13 1.65 17.88 -107.50 -1.92 -0.27 16 17 C -0.06 -0.59 6.11 -39.05 -0.24 -0.83 16 18 C -0.13 -0.92 9.36 -39.37 -0.37 -1.29 16 19 C -0.03 -0.19 9.82 -39.58 -0.39 -0.58 16 20 C -0.06 -0.41 6.32 -39.46 -0.25 -0.66 16 21 Cl -0.04 -0.27 28.95 -51.86 -1.50 -1.77 16 22 C -0.02 -0.19 9.33 -39.58 -0.37 -0.56 16 23 C -0.03 -0.37 6.87 -79.74 -0.55 -0.92 16 24 N 0.03 0.42 4.45 34.06 0.15 0.58 16 25 O -0.17 -2.25 18.45 -29.46 -0.54 -2.79 16 26 O -0.13 -2.04 15.81 -29.46 -0.47 -2.51 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.39 5.94 8.59 -40.82 -0.35 5.59 16 32 H 0.12 0.95 7.74 -51.92 -0.40 0.55 16 33 H 0.12 1.03 7.76 -51.93 -0.40 0.63 16 34 H 0.16 0.75 5.88 -52.49 -0.31 0.44 16 35 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.16 1.18 7.61 -52.49 -0.40 0.78 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -31.88 345.92 -8.73 -40.62 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -3.37 Total: 0.92 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.29 Total: -7.72 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.65 Total: -36.66 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.92 Total: -16.67 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.59 Total: 16.33 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.92 Total: -0.27 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.50 Total: -1.77 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.88 -8.73 -40.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097107269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.380 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds