Wall clock time and date at job start Tue Mar 31 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29023 * 124.91372 * 2 1 4 4 C 1.31784 * 117.12236 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74680 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.46849 * 274.97863 * 5 4 3 7 7 C 1.46892 * 111.00381 * 66.04591 * 6 5 4 8 8 C 1.38115 * 110.99980 * 190.00447 * 6 5 4 9 9 N 1.32867 * 120.80904 * 359.97438 * 8 6 5 10 10 C 1.32119 * 121.18832 * 179.97438 * 9 8 6 11 11 N 1.31505 * 122.64920 * 359.97438 * 10 9 8 12 12 C 1.33198 * 120.68409 * 0.02562 * 11 10 9 13 13 C 1.40807 * 120.81417 * 179.72187 * 8 6 5 14 14 C 1.41173 * 134.69564 * 0.67443 * 13 8 6 15 15 N 1.30258 * 108.46821 * 179.54882 * 14 13 8 16 16 N 1.36311 * 134.61612 * 180.02562 * 12 11 10 17 17 C 1.46495 * 125.87325 * 359.97438 * 16 12 11 18 18 C 1.50703 * 109.47573 * 90.00033 * 17 16 12 19 19 H 1.08003 * 119.99790 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00279 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00092 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00177 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46794 * 90.00122 * 22 20 18 24 24 H 1.48493 * 109.47523 * 210.00507 * 22 20 18 25 25 H 1.48497 * 109.47171 * 330.00584 * 22 20 18 26 26 C 1.33639 * 114.50230 * 0.02562 * 4 3 2 27 27 S 1.70979 * 124.91513 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47285 * 89.99792 * 1 2 3 29 29 H 1.09004 * 109.46739 * 209.99442 * 1 2 3 30 30 H 1.09000 * 109.47174 * 329.99386 * 1 2 3 31 31 H 1.08999 * 109.47368 * 34.97772 * 5 4 3 32 32 H 1.09001 * 109.46817 * 154.98029 * 5 4 3 33 33 H 1.09005 * 109.47354 * 59.99987 * 7 6 5 34 34 H 1.09000 * 109.47592 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.47356 * 300.00170 * 7 6 5 36 36 H 1.07997 * 118.67224 * 180.02562 * 10 9 8 37 37 H 1.07995 * 125.77020 * 359.32227 * 14 13 8 38 38 H 1.09003 * 109.47051 * 209.99758 * 17 16 12 39 39 H 1.08999 * 109.47629 * 329.99717 * 17 16 12 40 40 H 0.97005 * 120.00104 * 179.97438 * 21 20 18 41 41 H 1.07997 * 126.03698 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0012 6 7 4.7582 2.4751 -1.3784 7 6 3.5375 3.0596 -1.9495 8 6 5.8103 3.3678 -1.4405 9 7 6.4728 3.7162 -0.3428 10 6 7.4806 4.5690 -0.3936 11 7 7.8881 5.1197 -1.5161 12 6 7.2879 4.8340 -2.6704 13 6 6.2104 3.9267 -2.6694 14 6 5.7651 3.8122 -4.0042 15 7 6.5084 4.5752 -4.7540 16 7 7.4659 5.2243 -3.9643 17 6 8.4818 6.1636 -4.4457 18 6 9.7324 5.4068 -4.8122 19 1 9.7671 4.3334 -4.6976 20 6 10.8322 6.0846 -5.2938 21 7 10.7901 7.3917 -5.4329 22 14 12.3826 5.1465 -5.7475 23 1 12.3167 4.7425 -7.1749 24 1 13.5675 6.0154 -5.5330 25 1 12.4959 3.9358 -4.8951 26 6 3.9355 -0.4006 0.0004 27 16 2.4857 -1.4020 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 4.1267 2.8480 0.5902 32 1 5.4744 1.6954 0.4361 33 1 3.2290 3.9153 -1.3488 34 1 3.7340 3.3852 -2.9710 35 1 2.7438 2.3125 -1.9522 36 1 7.9909 4.8234 0.5236 37 1 4.9488 3.1936 -4.3465 38 1 8.1045 6.6886 -5.3233 39 1 8.7105 6.8851 -3.6612 40 1 11.5640 7.8686 -5.7714 41 1 4.9546 -0.7580 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:57 Heat of formation + Delta-G solvation = 180.159622 kcal Electronic energy + Delta-G solvation = -26558.914665 eV Core-core repulsion = 22796.289766 eV Total energy + Delta-G solvation = -3762.624899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65556 -40.34078 -38.78747 -37.22924 -33.86530 -33.05839 -32.25078 -31.48205 -29.98485 -29.04822 -27.73145 -27.00369 -26.05576 -23.72443 -23.36127 -22.82075 -21.81114 -20.04836 -19.94335 -18.15735 -17.45964 -17.40734 -16.71183 -16.40731 -15.77745 -15.45182 -15.18979 -14.82336 -14.61387 -14.40155 -14.28784 -13.85138 -13.82666 -13.36592 -13.29667 -12.97363 -12.81083 -12.55425 -12.26703 -12.16003 -11.96987 -11.71406 -11.52678 -11.14226 -11.09574 -10.87983 -10.78742 -10.30388 -10.21641 -9.94781 -9.82735 -9.67559 -9.36550 -9.06383 -8.79408 -8.62088 -8.36683 -7.89509 -6.24241 -4.30935 0.42245 1.01478 1.05955 1.42768 1.73380 2.37210 2.89200 2.97196 3.23388 3.28970 3.34896 3.48999 3.77418 4.19565 4.31093 4.40378 4.59948 4.64626 4.78937 4.94874 4.96678 4.99993 5.03939 5.05783 5.11423 5.28668 5.30051 5.42319 5.46321 5.54594 5.60825 5.63288 5.78378 5.92193 6.24319 6.36551 6.59944 6.98651 7.02382 7.06922 7.26582 7.45909 7.61966 7.77912 7.87757 8.12270 8.60573 8.72997 9.34305 10.83999 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.002270 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.416208 B =12330.297515 C =12391.855530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.046 3.954 3 N -0.467 5.467 4 C 0.070 3.930 5 C 0.141 3.859 6 N -0.469 5.469 7 C 0.029 3.971 8 C 0.433 3.567 9 N -0.600 5.600 10 C 0.350 3.650 11 N -0.533 5.533 12 C 0.352 3.648 13 C -0.295 4.295 14 C 0.070 3.930 15 N -0.235 5.235 16 N -0.331 5.331 17 C 0.263 3.737 18 C -0.534 4.534 19 H 0.062 0.938 20 C 0.067 3.933 21 N -0.891 5.891 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.273 1.273 26 C -0.233 4.233 27 S 0.113 5.887 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.198 0.802 37 H 0.188 0.812 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.268 0.732 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.187 -15.452 12.813 28.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.232 4.232 3 N -0.183 5.183 4 C -0.062 4.062 5 C 0.012 3.988 6 N -0.185 5.185 7 C -0.117 4.117 8 C 0.183 3.817 9 N -0.325 5.325 10 C 0.056 3.944 11 N -0.255 5.255 12 C 0.103 3.897 13 C -0.311 4.311 14 C -0.125 4.125 15 N -0.050 5.050 16 N -0.118 5.118 17 C 0.146 3.854 18 C -0.573 4.573 19 H 0.080 0.920 20 C -0.137 4.137 21 N -0.528 5.528 22 Si 0.735 3.265 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.198 1.198 26 C -0.373 4.373 27 S 0.367 5.633 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.214 0.786 37 H 0.205 0.795 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -19.578 -15.414 11.884 27.606 hybrid contribution 1.020 0.234 0.142 1.056 sum -18.558 -15.181 12.026 26.823 Atomic orbital electron populations 1.20442 0.85151 1.04182 1.03962 1.27015 1.01732 0.90975 1.03524 1.66124 1.04497 1.31628 1.16008 1.20108 0.89746 0.94172 1.02132 1.20517 0.97033 0.93612 0.87683 1.58601 1.05659 1.33639 1.20621 1.22633 0.89336 0.99209 1.00478 1.19387 0.90265 0.84524 0.87529 1.68322 1.14231 1.20879 1.29100 1.24512 0.88298 0.86724 0.94831 1.67525 1.31404 1.29808 0.96714 1.19024 0.90761 0.91866 0.88028 1.19638 1.06166 1.09973 0.95353 1.23574 1.00033 0.99456 0.89442 1.76986 1.00281 1.08606 1.19169 1.49522 1.26089 1.35779 1.00369 1.19830 0.82746 0.85915 0.96880 1.21235 0.96896 0.94276 1.44888 0.92026 1.24899 0.98874 0.95002 0.94901 1.69917 1.31178 1.06716 1.45037 0.86330 0.81655 0.79638 0.78903 1.20302 1.20775 1.19752 1.26865 1.03244 0.95632 1.11559 1.83997 0.98000 1.12836 1.68482 0.89528 0.90166 0.89250 0.91067 0.87373 0.93769 0.89974 0.89530 0.78605 0.79490 0.92672 0.92215 0.92223 0.80371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.46 36.01 0.38 0.00 16 2 C 0.05 0.38 7.39 -13.45 -0.10 0.28 16 3 N -0.47 -4.90 9.31 -8.05 -0.07 -4.98 16 4 C 0.07 0.74 5.57 -84.22 -0.47 0.27 16 5 C 0.14 1.63 4.68 -4.97 -0.02 1.60 16 6 N -0.47 -6.13 4.77 -182.03 -0.87 -7.00 16 7 C 0.03 0.34 9.05 60.06 0.54 0.88 16 8 C 0.43 6.93 6.42 -154.84 -0.99 5.93 16 9 N -0.60 -9.47 8.76 -13.62 -0.12 -9.58 16 10 C 0.35 5.79 12.24 -92.12 -1.13 4.66 16 11 N -0.53 -11.11 10.47 -13.97 -0.15 -11.26 16 12 C 0.35 7.74 8.04 -156.23 -1.26 6.49 16 13 C -0.29 -5.46 5.75 -106.82 -0.61 -6.08 16 14 C 0.07 1.22 10.72 -17.11 -0.18 1.04 16 15 N -0.23 -5.04 12.45 30.80 0.38 -4.66 16 16 N -0.33 -7.90 3.63 -61.65 -0.22 -8.13 16 17 C 0.26 6.99 6.19 -5.19 -0.03 6.95 16 18 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 19 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 20 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 21 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 22 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.23 -2.13 11.11 29.12 0.32 -1.81 16 27 S 0.11 0.83 23.18 -107.50 -2.49 -1.66 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 32 H 0.11 1.25 7.50 -51.93 -0.39 0.86 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.91 5.05 -51.93 -0.26 0.65 16 35 H 0.09 0.94 6.43 -51.93 -0.33 0.60 16 36 H 0.20 2.41 8.06 -52.49 -0.42 1.99 16 37 H 0.19 2.44 6.86 -52.49 -0.36 2.08 16 38 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 41 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -32.97 364.25 -11.01 -43.97 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.69 Total: -0.38 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -3.98 Total: 6.44 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -0.31 Total: -70.57 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.49 Total: -1.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.97 -11.01 -43.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.133 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds