Wall clock time and date at job start Tue Mar 31 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99784 * 2 1 4 4 C 1.46894 * 111.00096 * 123.95086 * 2 1 3 5 5 C 1.52995 * 109.47054 * 75.74881 * 4 2 1 6 6 C 1.53126 * 109.52502 * 185.21538 * 5 4 2 7 7 C 1.53037 * 109.27977 * 182.44235 * 6 5 4 8 8 N 1.46846 * 109.52332 * 59.17986 * 7 6 5 9 9 C 1.38111 * 110.99745 * 174.15988 * 8 7 6 10 10 N 1.32858 * 120.81627 * 359.97438 * 9 8 7 11 11 C 1.32118 * 121.19557 * 180.02562 * 10 9 8 12 12 N 1.31505 * 122.64726 * 0.22500 * 11 10 9 13 13 C 1.33198 * 120.68149 * 359.54316 * 12 11 10 14 14 C 1.40814 * 120.80822 * 179.97438 * 9 8 7 15 15 C 1.41171 * 134.70306 * 0.02562 * 14 9 8 16 16 N 1.30257 * 108.46733 * 179.97438 * 15 14 9 17 17 N 1.36320 * 134.61798 * 180.11923 * 13 12 11 18 18 C 1.46497 * 125.87055 * 0.26171 * 17 13 12 19 19 C 1.50700 * 109.47161 * 89.99662 * 18 17 13 20 20 H 1.07998 * 120.00158 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99938 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99913 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00039 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46834 * 90.00322 * 23 21 19 25 25 H 1.48496 * 109.47111 * 210.00243 * 23 21 19 26 26 H 1.48492 * 109.47162 * 330.00173 * 23 21 19 27 27 C 1.46846 * 111.19887 * 298.25649 * 8 7 6 28 28 C 1.53041 * 109.52255 * 61.74336 * 27 8 7 29 29 H 1.08996 * 109.47543 * 296.04325 * 1 2 3 30 30 H 1.08999 * 109.47213 * 56.04740 * 1 2 3 31 31 H 1.09004 * 109.46905 * 176.04785 * 1 2 3 32 32 H 1.08996 * 109.47412 * 188.81703 * 3 2 1 33 33 H 1.09005 * 109.47051 * 308.81839 * 3 2 1 34 34 H 1.09003 * 109.47456 * 68.81482 * 3 2 1 35 35 H 1.09002 * 109.47344 * 315.74991 * 4 2 1 36 36 H 1.09002 * 109.47135 * 195.75049 * 4 2 1 37 37 H 1.08998 * 109.52510 * 305.34088 * 5 4 2 38 38 H 1.08999 * 109.50039 * 62.50150 * 6 5 4 39 39 H 1.09001 * 109.50182 * 302.37983 * 6 5 4 40 40 H 1.08999 * 109.46056 * 299.16376 * 7 6 5 41 41 H 1.08999 * 109.45946 * 179.19540 * 7 6 5 42 42 H 1.07997 * 118.67952 * 180.02562 * 11 10 9 43 43 H 1.08000 * 125.76520 * 359.96779 * 15 14 9 44 44 H 1.08997 * 109.47203 * 209.99450 * 18 17 13 45 45 H 1.08998 * 109.47280 * 329.99571 * 18 17 13 46 46 H 0.97003 * 119.99872 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.46494 * 181.75719 * 27 8 7 48 48 H 1.09002 * 109.46569 * 301.72602 * 27 8 7 49 49 H 1.08996 * 109.50312 * 180.88036 * 28 27 8 50 50 H 1.08994 * 109.50188 * 60.76100 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.8467 -2.2626 0.8573 6 6 2.2739 -3.0596 2.0929 7 6 2.1810 -4.5560 1.7860 8 7 3.0516 -4.8786 0.6483 9 6 3.0921 -6.2412 0.4269 10 7 2.4007 -7.0764 1.1947 11 6 2.4344 -8.3812 0.9900 12 7 3.1465 -8.9306 0.0306 13 6 3.8703 -8.1769 -0.7954 14 6 3.8672 -6.7793 -0.6184 15 6 4.7093 -6.2349 -1.6120 16 7 5.1833 -7.2116 -2.3317 17 7 4.6872 -8.4321 -1.8565 18 6 4.9930 -9.7554 -2.4055 19 6 3.9881 -10.1004 -3.4743 20 1 3.2006 -9.4034 -3.7202 21 6 4.0747 -11.3053 -4.1388 22 7 3.1980 -11.6062 -5.0718 23 14 5.4381 -12.5099 -3.7149 24 1 4.9762 -13.4209 -2.6369 25 1 5.7879 -13.3054 -4.9191 26 1 6.6338 -11.7612 -3.2517 27 6 2.6315 -4.1610 -0.5620 28 6 2.7378 -2.6528 -0.3252 29 1 -0.3634 0.4512 0.9233 30 1 -0.3633 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0708 32 1 3.0736 1.3468 -0.1575 33 1 1.5241 1.9415 -0.8007 34 1 1.7789 1.8438 0.9582 35 1 1.4384 -0.5078 2.0383 36 1 3.0490 -0.5260 1.2807 37 1 0.8067 -2.4873 0.6206 38 1 1.6158 -2.8177 2.9274 39 1 3.3013 -2.8046 2.3531 40 1 1.1509 -4.8128 1.5394 41 1 2.4983 -5.1261 2.6592 42 1 1.8562 -9.0227 1.6385 43 1 4.9241 -5.1857 -1.7519 44 1 5.9939 -9.7472 -2.8371 45 1 4.9466 -10.4986 -1.6096 46 1 3.2587 -12.4541 -5.5391 47 1 3.2758 -4.4442 -1.3943 48 1 1.5992 -4.4197 -0.7978 49 1 2.4111 -2.1202 -1.2183 50 1 3.7724 -2.3914 -0.1030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:42 Heat of formation + Delta-G solvation = 133.190104 kcal Electronic energy + Delta-G solvation = -30241.685050 eV Core-core repulsion = 26305.936718 eV Total energy + Delta-G solvation = -3935.748332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.202 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.70552 -39.80906 -38.45364 -37.47015 -34.67005 -33.65809 -32.15510 -31.78534 -30.92315 -29.88474 -27.96474 -27.88002 -27.56831 -24.41716 -24.21472 -22.97072 -22.76403 -22.32562 -21.20793 -20.18999 -19.82053 -17.57600 -17.55244 -17.13421 -16.49471 -15.89297 -15.65858 -15.41997 -15.28797 -14.93940 -14.64059 -14.53734 -14.16239 -14.08552 -13.98195 -13.64147 -13.30456 -13.01737 -12.79501 -12.73800 -12.52676 -12.36737 -12.15258 -12.08282 -12.03879 -11.89929 -11.40335 -11.30565 -11.13358 -11.00354 -10.76123 -10.69276 -10.55626 -10.52455 -10.29072 -10.16062 -9.70191 -9.28774 -8.84939 -8.75075 -8.71126 -8.36072 -7.89276 -6.23844 -4.26688 1.00865 1.72207 2.79947 2.91084 3.20087 3.25939 3.27691 3.40277 3.56356 4.18857 4.24867 4.37621 4.42540 4.54300 4.59474 4.66951 4.78791 4.92151 4.94530 4.96683 5.04629 5.07373 5.08744 5.15931 5.18604 5.24802 5.27595 5.33974 5.40863 5.45752 5.50622 5.54204 5.58380 5.64563 5.67161 5.75110 5.85013 5.91635 6.04019 6.17551 6.26607 6.46172 6.49138 6.57156 6.65046 6.66442 6.83088 7.09924 7.21796 7.29529 7.62241 8.04013 8.28452 8.60858 8.77614 9.30787 10.88793 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020200 B = 0.002337 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.815063 B =11978.132369 C =12584.233442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.545 5.545 3 C 0.024 3.976 4 C 0.060 3.940 5 C -0.086 4.086 6 C -0.115 4.115 7 C 0.069 3.931 8 N -0.469 5.469 9 C 0.434 3.566 10 N -0.598 5.598 11 C 0.352 3.648 12 N -0.537 5.537 13 C 0.355 3.645 14 C -0.296 4.296 15 C 0.075 3.925 16 N -0.233 5.233 17 N -0.332 5.332 18 C 0.236 3.764 19 C -0.539 4.539 20 H 0.078 0.922 21 C 0.080 3.920 22 N -0.887 5.887 23 Si 0.874 3.126 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.264 1.264 27 C 0.055 3.945 28 C -0.101 4.101 29 H 0.023 0.977 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.197 0.803 43 H 0.191 0.809 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.269 0.731 47 H 0.091 0.909 48 H 0.048 0.952 49 H 0.085 0.915 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.258 23.422 15.020 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.269 5.269 3 C -0.124 4.124 4 C -0.068 4.068 5 C -0.105 4.105 6 C -0.154 4.154 7 C -0.058 4.058 8 N -0.186 5.186 9 C 0.184 3.816 10 N -0.323 5.323 11 C 0.058 3.942 12 N -0.260 5.260 13 C 0.106 3.894 14 C -0.312 4.312 15 C -0.121 4.121 16 N -0.049 5.049 17 N -0.118 5.118 18 C 0.118 3.882 19 C -0.577 4.577 20 H 0.096 0.904 21 C -0.124 4.124 22 N -0.524 5.524 23 Si 0.700 3.300 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.188 1.188 27 C -0.070 4.070 28 C -0.139 4.139 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.213 0.787 43 H 0.207 0.793 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.109 0.891 48 H 0.066 0.934 49 H 0.104 0.896 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.317 22.107 13.952 26.244 hybrid contribution -0.452 0.035 0.819 0.936 sum -2.769 22.142 14.770 26.760 Atomic orbital electron populations 1.22441 0.87423 1.02457 1.00289 1.61930 1.07928 1.13627 1.43392 1.22391 1.01006 0.88852 1.00135 1.22198 1.00173 0.93476 0.90911 1.21238 1.00152 0.93463 0.95613 1.21711 1.02392 0.93970 0.97292 1.21979 0.95138 0.95563 0.93095 1.58571 1.49955 1.02484 1.07582 1.19448 0.86279 0.89462 0.86373 1.68342 1.25721 1.05715 1.32536 1.24516 0.91087 0.87945 0.90614 1.67512 1.11486 1.40195 1.06775 1.18993 0.91457 0.89085 0.89830 1.19651 1.11027 0.95472 1.05098 1.23599 0.96422 0.99217 0.92843 1.76981 1.18837 0.89429 1.19616 1.48992 1.34450 1.06979 1.21388 1.20107 0.98632 0.73945 0.95522 1.21090 1.13425 1.04461 1.18710 0.90407 1.24771 0.95947 0.97371 0.94332 1.69870 1.35251 1.23623 1.23644 0.86874 0.82562 0.81777 0.78750 1.19502 1.20485 1.18843 1.22436 1.00137 0.94313 0.90145 1.21571 1.00453 0.92869 0.98987 0.95814 0.91457 0.91128 0.91236 0.91467 0.95847 0.94618 0.90709 0.91159 0.91202 0.90913 0.92992 0.89269 0.78653 0.79263 0.92929 0.93086 0.92118 0.89108 0.93382 0.89627 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.39 60.06 0.56 0.70 16 2 N -0.55 -3.83 4.48 -251.27 -1.12 -4.96 16 3 C 0.02 0.14 9.52 60.07 0.57 0.71 16 4 C 0.06 0.40 4.39 -3.83 -0.02 0.38 16 5 C -0.09 -0.63 2.31 -90.49 -0.21 -0.84 16 6 C -0.12 -0.88 5.38 -26.65 -0.14 -1.02 16 7 C 0.07 0.71 4.67 -3.83 -0.02 0.70 16 8 N -0.47 -5.76 4.68 -172.84 -0.81 -6.57 16 9 C 0.43 6.87 6.43 -154.85 -1.00 5.87 16 10 N -0.60 -9.47 8.84 -13.62 -0.12 -9.59 16 11 C 0.35 5.83 12.24 -92.12 -1.13 4.70 16 12 N -0.54 -11.13 10.47 -13.97 -0.15 -11.27 16 13 C 0.35 7.72 8.04 -156.22 -1.26 6.47 16 14 C -0.30 -5.41 5.73 -106.81 -0.61 -6.03 16 15 C 0.07 1.28 10.69 -17.11 -0.18 1.09 16 16 N -0.23 -4.92 12.45 30.80 0.38 -4.54 16 17 N -0.33 -7.77 3.63 -61.64 -0.22 -7.99 16 18 C 0.24 5.92 5.26 -5.20 -0.03 5.89 16 19 C -0.54 -15.59 9.94 -34.44 -0.34 -15.93 16 20 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 21 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 22 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 23 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.26 -5.97 6.54 56.52 0.37 -5.61 16 27 C 0.06 0.60 5.23 -3.83 -0.02 0.58 16 28 C -0.10 -0.84 5.24 -26.65 -0.14 -0.98 16 29 H 0.02 0.14 8.09 -51.93 -0.42 -0.28 16 30 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 31 H 0.07 0.46 6.80 -51.93 -0.35 0.11 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.35 8.04 -51.93 -0.42 -0.06 16 34 H 0.02 0.13 8.13 -51.93 -0.42 -0.30 16 35 H 0.04 0.23 7.96 -51.93 -0.41 -0.18 16 36 H 0.07 0.49 7.94 -51.93 -0.41 0.07 16 37 H 0.07 0.57 6.78 -51.93 -0.35 0.21 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 41 H 0.09 0.99 7.73 -51.93 -0.40 0.59 16 42 H 0.20 2.42 8.06 -52.49 -0.42 2.00 16 43 H 0.19 2.37 6.88 -52.49 -0.36 2.01 16 44 H 0.05 1.28 7.20 -51.93 -0.37 0.91 16 45 H 0.05 1.26 7.57 -51.93 -0.39 0.86 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 47 H 0.09 1.02 4.97 -51.93 -0.26 0.77 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.09 0.73 7.85 -51.93 -0.41 0.32 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -33.22 393.91 -12.00 -45.22 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -7.95 Total: -0.75 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -4.05 Total: 4.50 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -1.27 Total: -71.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.22 -12.00 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.413 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds