Wall clock time and date at job start Tue Mar 31 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00054 * 2 1 4 4 C 1.34783 * 120.00393 * 179.97438 * 2 1 3 5 5 O 1.21289 * 119.99497 * 0.02562 * 4 2 1 6 6 C 1.50691 * 120.00220 * 180.02562 * 4 2 1 7 7 H 1.09003 * 110.72634 * 56.90775 * 6 4 2 8 8 C 1.54937 * 110.67237 * 293.81011 * 6 4 2 9 9 C 1.54596 * 102.92301 * 204.15478 * 8 6 4 10 10 C 1.53990 * 105.14082 * 21.95646 * 9 8 6 11 11 N 1.47896 * 107.05933 * 1.22237 * 10 9 8 12 12 C 1.38104 * 111.00551 * 214.15720 * 11 10 9 13 13 N 1.32866 * 120.81645 * 240.20302 * 12 11 10 14 14 C 1.32119 * 121.19383 * 180.25430 * 13 12 11 15 15 N 1.31512 * 122.64590 * 359.41269 * 14 13 12 16 16 C 1.33193 * 120.68320 * 0.28484 * 15 14 13 17 17 C 1.40812 * 120.81013 * 59.87312 * 12 11 10 18 18 C 1.41166 * 134.69909 * 0.07217 * 17 12 11 19 19 N 1.30252 * 108.46941 * 179.97438 * 18 17 12 20 20 N 1.36314 * 134.61707 * 179.97438 * 16 15 14 21 21 C 1.46501 * 125.87480 * 359.97438 * 20 16 15 22 22 C 1.50703 * 109.46698 * 89.99887 * 21 20 16 23 23 H 1.07999 * 120.00556 * 0.02562 * 22 21 20 24 24 C 1.37877 * 119.99747 * 179.97438 * 22 21 20 25 25 N 1.31515 * 119.99997 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00269 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47143 * 59.99738 * 26 24 22 28 28 H 1.48498 * 109.47624 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47159 * 300.00074 * 26 24 22 30 30 H 1.08998 * 109.47536 * 269.99866 * 1 2 3 31 31 H 1.09001 * 109.46970 * 30.00598 * 1 2 3 32 32 H 1.09004 * 109.47109 * 150.00315 * 1 2 3 33 33 H 1.09003 * 109.46855 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46866 * 299.99584 * 3 2 1 35 35 H 1.08995 * 109.47072 * 60.00058 * 3 2 1 36 36 H 1.08996 * 110.72328 * 85.79158 * 8 6 4 37 37 H 1.09006 * 110.87047 * 322.58278 * 8 6 4 38 38 H 1.09004 * 110.30230 * 263.03949 * 9 8 6 39 39 H 1.08993 * 110.30697 * 140.87730 * 9 8 6 40 40 H 1.09002 * 109.91243 * 241.87420 * 10 9 8 41 41 H 1.08997 * 109.91801 * 120.58037 * 10 9 8 42 42 H 1.08002 * 118.68067 * 179.70002 * 14 13 12 43 43 H 1.07999 * 125.76444 * 359.97438 * 18 17 12 44 44 H 1.08997 * 109.47349 * 210.00021 * 21 20 16 45 45 H 1.08991 * 109.47058 * 330.00374 * 21 20 16 46 46 H 0.96996 * 120.00407 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2176 0.0005 6 6 3.6459 -1.1672 0.0011 7 1 4.0313 -0.6103 0.8552 8 6 4.1933 -0.5822 -1.3250 9 6 5.6018 -1.2117 -1.4252 10 6 5.5440 -2.4698 -0.5392 11 7 4.1702 -2.5569 0.0016 12 6 4.1731 -3.0843 1.2780 13 7 3.5195 -4.2083 1.5515 14 6 3.5132 -4.7168 2.7709 15 7 4.1527 -4.1588 3.7755 16 6 4.8419 -3.0325 3.6010 17 6 4.8746 -2.4477 2.3198 18 6 5.6639 -1.2814 2.4177 19 7 6.0765 -1.1644 3.6476 20 7 5.5877 -2.2308 4.4129 21 6 5.8349 -2.4470 5.8407 22 6 7.0787 -3.2799 6.0146 23 1 7.6302 -3.6144 5.1483 24 6 7.5133 -3.6141 7.2797 25 7 6.8421 -3.2064 8.3346 26 14 9.0555 -4.6458 7.4954 27 1 10.2134 -3.9370 6.8939 28 1 9.3060 -4.8651 8.9426 29 1 8.8727 -5.9563 6.8211 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 3.2691 1.0695 0.0005 34 1 1.9342 1.8402 -0.8900 35 1 1.9342 1.8403 0.8900 36 1 4.2594 0.5043 -1.2691 37 1 3.5739 -0.8867 -2.1687 38 1 6.3537 -0.5180 -1.0487 39 1 5.8213 -1.4853 -2.4571 40 1 6.2598 -2.3816 0.2781 41 1 5.7649 -3.3547 -1.1360 42 1 2.9645 -5.6298 2.9489 43 1 5.8878 -0.6011 1.6094 44 1 5.9693 -1.4854 6.3359 45 1 4.9848 -2.9672 6.2819 46 1 7.1475 -3.4418 9.2246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:30 Heat of formation + Delta-G solvation = 120.109958 kcal Electronic energy + Delta-G solvation = -31091.404029 eV Core-core repulsion = 27019.255405 eV Total energy + Delta-G solvation = -4072.148624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.94119 -40.44020 -38.70888 -38.08251 -35.69245 -34.16386 -33.43469 -31.66207 -31.39623 -30.42085 -29.17573 -27.91556 -27.32170 -26.29434 -24.47467 -23.69496 -22.77332 -22.13602 -21.43883 -20.32414 -19.43040 -17.97900 -17.49657 -17.13979 -16.76579 -16.61225 -16.06997 -15.75308 -15.33099 -14.91468 -14.82160 -14.56699 -14.31269 -14.12850 -13.69704 -13.64812 -13.21837 -13.15730 -12.93966 -12.80907 -12.52491 -12.47007 -12.31583 -12.24849 -12.00212 -11.79115 -11.55285 -11.19140 -11.12978 -10.98316 -10.83942 -10.54111 -10.36239 -10.33372 -9.84983 -9.80245 -9.17506 -8.89082 -8.75224 -8.66473 -8.47296 -8.07566 -6.28477 -4.35913 0.82695 1.71595 2.52694 2.63783 2.74207 2.82984 3.22224 3.25754 3.30057 3.38328 4.03406 4.15141 4.24255 4.27718 4.49017 4.51213 4.57809 4.62287 4.74981 4.77915 4.85946 5.00978 5.02696 5.06562 5.11959 5.20082 5.27601 5.28905 5.35779 5.39963 5.45901 5.49772 5.60710 5.62675 5.70718 5.82081 6.17162 6.23261 6.38089 6.42824 6.90759 6.93269 6.99765 7.12383 7.24765 7.59424 7.73615 7.82114 8.01470 8.10051 8.59344 8.67654 9.29639 10.79758 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.003136 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.320485 B = 8925.970764 C = 9094.038480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.626 5.626 3 C 0.069 3.931 4 C 0.518 3.482 5 O -0.498 6.498 6 C 0.051 3.949 7 H 0.091 0.909 8 C -0.113 4.113 9 C -0.128 4.128 10 C 0.041 3.959 11 N -0.453 5.453 12 C 0.426 3.574 13 N -0.520 5.520 14 C 0.336 3.664 15 N -0.518 5.518 16 C 0.346 3.654 17 C -0.319 4.319 18 C 0.050 3.950 19 N -0.220 5.220 20 N -0.330 5.330 21 C 0.263 3.737 22 C -0.538 4.538 23 H 0.061 0.939 24 C 0.068 3.932 25 N -0.890 5.890 26 Si 0.908 3.092 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.202 0.798 43 H 0.184 0.816 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.354 10.199 -20.551 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.363 5.363 3 C -0.074 4.074 4 C 0.304 3.696 5 O -0.370 6.370 6 C -0.060 4.060 7 H 0.109 0.891 8 C -0.152 4.152 9 C -0.166 4.166 10 C -0.086 4.086 11 N -0.175 5.175 12 C 0.175 3.825 13 N -0.237 5.237 14 C 0.043 3.957 15 N -0.238 5.238 16 C 0.097 3.903 17 C -0.336 4.336 18 C -0.145 4.145 19 N -0.036 5.036 20 N -0.118 5.118 21 C 0.146 3.854 22 C -0.576 4.576 23 H 0.079 0.921 24 C -0.136 4.136 25 N -0.527 5.527 26 Si 0.735 3.265 27 H -0.200 1.200 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.218 0.782 43 H 0.201 0.799 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.743 9.100 -19.294 22.694 hybrid contribution 1.256 0.216 0.282 1.305 sum -6.487 9.316 -19.012 22.143 Atomic orbital electron populations 1.21580 0.78994 1.02988 1.01870 1.47673 1.07056 1.06180 1.75384 1.22028 0.97744 0.85502 1.02133 1.20254 0.89189 0.83491 0.76687 1.90777 1.69312 1.30445 1.46458 1.22890 0.93164 0.89402 1.00568 0.89146 1.22622 0.96741 1.00185 0.95610 1.22432 0.96724 0.96295 1.01129 1.23054 0.86979 0.99838 0.98686 1.60921 1.20428 1.17910 1.18240 1.19382 0.87093 0.88872 0.87138 1.68099 1.20773 1.11854 1.22926 1.24818 0.91629 0.97466 0.81824 1.67520 1.11178 1.09099 1.35984 1.19089 0.92398 0.90461 0.88317 1.20851 1.11801 1.02991 0.97969 1.23481 0.98558 0.96822 0.95668 1.76926 1.16066 1.07350 1.03273 1.49572 1.36213 1.15144 1.10850 1.19857 0.98748 0.98906 0.67858 1.21182 1.09505 1.33892 0.93035 0.92067 1.24898 0.97664 0.95802 0.95209 1.69902 1.39414 1.44954 0.98477 0.86383 0.82353 0.80543 0.77221 1.19962 1.20806 1.19907 0.92905 0.91301 0.90450 0.89931 0.91768 0.91956 0.89328 0.89664 0.90314 0.89843 0.91884 0.88944 0.78172 0.79930 0.92630 0.92171 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.48 59.84 0.63 1.40 16 2 N -0.63 -6.29 3.27 -189.52 -0.62 -6.91 16 3 C 0.07 0.42 10.04 59.85 0.60 1.02 16 4 C 0.52 7.00 6.97 -10.99 -0.08 6.92 16 5 O -0.50 -8.93 15.80 5.55 0.09 -8.84 16 6 C 0.05 0.58 1.51 -66.94 -0.10 0.48 16 7 H 0.09 1.01 4.81 -51.93 -0.25 0.76 16 8 C -0.11 -0.81 5.73 -24.87 -0.14 -0.96 16 9 C -0.13 -0.87 6.93 -25.38 -0.18 -1.05 16 10 C 0.04 0.44 6.30 -2.76 -0.02 0.43 16 11 N -0.45 -6.43 4.66 -162.74 -0.76 -7.19 16 12 C 0.43 7.46 5.43 -154.85 -0.84 6.62 16 13 N -0.52 -9.79 10.45 -13.62 -0.14 -9.93 16 14 C 0.34 6.18 12.24 -92.12 -1.13 5.06 16 15 N -0.52 -11.24 10.47 -13.97 -0.15 -11.38 16 16 C 0.35 7.70 8.04 -156.23 -1.26 6.44 16 17 C -0.32 -5.90 4.95 -106.82 -0.53 -6.43 16 18 C 0.05 0.82 9.28 -17.11 -0.16 0.66 16 19 N -0.22 -4.52 12.45 30.80 0.38 -4.14 16 20 N -0.33 -7.76 3.63 -61.64 -0.22 -7.99 16 21 C 0.26 6.91 6.19 -5.19 -0.03 6.88 16 22 C -0.54 -15.15 9.39 -34.44 -0.32 -15.47 16 23 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 24 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 25 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 26 Si 0.91 21.48 29.54 -169.99 -5.02 16.45 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 32 H 0.08 0.79 7.42 -51.93 -0.39 0.41 16 33 H 0.08 0.43 4.06 -51.93 -0.21 0.22 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.38 6.26 -51.93 -0.33 0.05 16 37 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.74 5.90 -51.93 -0.31 0.44 16 41 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.20 2.86 8.06 -52.49 -0.42 2.43 16 43 H 0.18 2.07 7.16 -52.49 -0.38 1.70 16 44 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 45 H 0.06 1.67 8.14 -51.93 -0.42 1.24 16 46 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -36.40 374.86 -9.75 -46.15 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.04 Total: -0.93 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: -3.65 Total: 13.80 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -0.77 Total: -72.28 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.40 -9.75 -46.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.261 kcal (2) G-P(sol) polarization free energy of solvation -36.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds