Wall clock time and date at job start Tue Mar 31 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00205 * 2 1 4 4 C 1.34778 * 119.99606 * 179.97438 * 2 1 3 5 5 O 1.21281 * 120.00268 * 4.86090 * 4 2 1 6 6 C 1.50705 * 119.99738 * 184.86172 * 4 2 1 7 7 H 1.09001 * 110.41832 * 326.40551 * 6 4 2 8 8 C 1.54905 * 110.37353 * 88.71944 * 6 4 2 9 9 C 1.55139 * 101.65343 * 155.90017 * 8 6 4 10 10 C 1.54328 * 103.01756 * 324.34717 * 9 8 6 11 11 N 1.47443 * 107.23306 * 22.28153 * 10 9 8 12 12 C 1.38116 * 110.99823 * 123.25727 * 11 10 9 13 13 N 1.32860 * 120.81011 * 239.87593 * 12 11 10 14 14 C 1.32126 * 121.18748 * 180.02562 * 13 12 11 15 15 N 1.31507 * 122.64908 * 359.97438 * 14 13 12 16 16 C 1.33202 * 120.68538 * 0.02562 * 15 14 13 17 17 C 1.40814 * 120.80995 * 59.89706 * 12 11 10 18 18 C 1.41160 * 134.69936 * 0.02562 * 17 12 11 19 19 N 1.30252 * 108.47122 * 179.71570 * 18 17 12 20 20 N 1.36305 * 134.62262 * 179.97438 * 16 15 14 21 21 C 1.46501 * 125.87322 * 359.97438 * 20 16 15 22 22 C 1.50698 * 109.47269 * 89.99719 * 21 20 16 23 23 H 1.07994 * 120.00138 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00103 * 179.97438 * 22 21 20 25 25 N 1.31515 * 119.99744 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00056 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46968 * 270.00109 * 26 24 22 28 28 H 1.48499 * 109.47333 * 29.99678 * 26 24 22 29 29 H 1.48497 * 109.47300 * 150.00329 * 26 24 22 30 30 H 1.09000 * 109.46906 * 270.00082 * 1 2 3 31 31 H 1.08997 * 109.46588 * 30.00260 * 1 2 3 32 32 H 1.08999 * 109.46850 * 149.99641 * 1 2 3 33 33 H 1.08999 * 109.47315 * 264.63150 * 3 2 1 34 34 H 1.09000 * 109.47000 * 24.63488 * 3 2 1 35 35 H 1.08998 * 109.47234 * 144.63100 * 3 2 1 36 36 H 1.09004 * 110.99017 * 37.80769 * 8 6 4 37 37 H 1.09002 * 111.02536 * 274.00490 * 8 6 4 38 38 H 1.08999 * 110.71021 * 205.96674 * 9 8 6 39 39 H 1.08998 * 110.71195 * 82.72657 * 9 8 6 40 40 H 1.09003 * 109.88841 * 262.87522 * 10 9 8 41 41 H 1.09001 * 109.88940 * 141.69125 * 10 9 8 42 42 H 1.07997 * 118.67794 * 179.97438 * 14 13 12 43 43 H 1.08008 * 125.76457 * 359.93960 * 18 17 12 44 44 H 1.09001 * 109.46948 * 329.99914 * 21 20 16 45 45 H 1.08997 * 109.47458 * 209.99890 * 21 20 16 46 46 H 0.97007 * 119.99906 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5357 -2.2157 -0.0880 6 6 3.6418 -1.1696 0.1111 7 1 4.0613 -0.2963 -0.3885 8 6 4.0731 -1.1989 1.5987 9 6 5.4924 -1.8176 1.5014 10 6 5.3498 -2.8350 0.3497 11 7 4.1986 -2.4108 -0.4679 12 6 4.5701 -2.2195 -1.7843 13 7 4.4238 -1.0348 -2.3675 14 6 4.7762 -0.8436 -3.6264 15 7 5.2872 -1.7981 -4.3729 16 6 5.4732 -3.0212 -3.8791 17 6 5.1128 -3.2756 -2.5413 18 6 5.4114 -4.6310 -2.2834 19 7 5.9043 -5.1585 -3.3675 20 7 5.9645 -4.1907 -4.3781 21 6 6.4628 -4.4011 -5.7396 22 6 7.9395 -4.1041 -5.7855 23 1 8.4554 -3.7905 -4.8901 24 6 8.6323 -4.2339 -6.9706 25 7 8.0041 -4.6163 -8.0609 26 14 10.4629 -3.8665 -7.0274 27 1 10.6701 -2.4321 -7.3513 28 1 11.0696 -4.1681 -5.7059 29 1 11.1043 -4.7070 -8.0701 30 1 -0.3633 0.0000 1.0277 31 1 -0.3632 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 2.4625 1.5353 -1.0231 34 1 1.5703 2.0504 0.4284 35 1 3.1050 1.1643 0.5948 36 1 3.4094 -1.8343 2.1852 37 1 4.1138 -0.1919 2.0139 38 1 5.7575 -2.3221 2.4305 39 1 6.2294 -1.0543 1.2522 40 1 5.1701 -3.8309 0.7548 41 1 6.2552 -2.8371 -0.2574 42 1 4.6391 0.1359 -4.0600 43 1 5.2540 -5.1448 -1.3464 44 1 5.9371 -3.7368 -6.4255 45 1 6.2911 -5.4365 -6.0334 46 1 8.4914 -4.7072 -8.8948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200206.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:35 Heat of formation + Delta-G solvation = 109.987587 kcal Electronic energy + Delta-G solvation = -30670.734608 eV Core-core repulsion = 26598.147045 eV Total energy + Delta-G solvation = -4072.587563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.76087 -40.47960 -38.81709 -37.88281 -35.60725 -34.15246 -33.40603 -31.56085 -31.47016 -30.26915 -29.16711 -28.03199 -27.20963 -26.22281 -24.22818 -23.81501 -22.85475 -21.94664 -21.54413 -20.12530 -19.23560 -17.82146 -17.55799 -17.32843 -16.70010 -16.43528 -16.02692 -15.77433 -15.37740 -14.93043 -14.78047 -14.54048 -14.07251 -13.96127 -13.53406 -13.46918 -13.34507 -13.20583 -12.91800 -12.89448 -12.72029 -12.50509 -12.23510 -12.18912 -11.87793 -11.68067 -11.59640 -11.32665 -11.10248 -11.00926 -10.84634 -10.69522 -10.32014 -10.20298 -9.93854 -9.75283 -9.21939 -8.85354 -8.83137 -8.62390 -8.36331 -7.87689 -6.24258 -4.31157 1.01760 1.73169 2.47761 2.73376 2.91571 3.00118 3.22501 3.28090 3.33190 3.45908 4.05671 4.16442 4.25560 4.30644 4.38124 4.58880 4.65662 4.66294 4.81898 4.99251 5.04207 5.05013 5.05800 5.09922 5.11715 5.16638 5.31248 5.38374 5.43382 5.46577 5.48676 5.56377 5.60671 5.61562 5.69050 5.84210 6.14734 6.27837 6.32850 6.61796 6.99970 7.01501 7.07683 7.16928 7.26679 7.61387 7.78004 7.87925 8.12252 8.14368 8.59661 8.72538 9.33889 10.84034 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018149 B = 0.002872 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.416010 B = 9746.318589 C =10074.830173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.624 5.624 3 C 0.080 3.920 4 C 0.531 3.469 5 O -0.519 6.519 6 C 0.054 3.946 7 H 0.117 0.883 8 C -0.118 4.118 9 C -0.137 4.137 10 C 0.051 3.949 11 N -0.444 5.444 12 C 0.430 3.570 13 N -0.604 5.604 14 C 0.350 3.650 15 N -0.532 5.532 16 C 0.352 3.648 17 C -0.292 4.292 18 C 0.076 3.924 19 N -0.236 5.236 20 N -0.331 5.331 21 C 0.263 3.737 22 C -0.534 4.534 23 H 0.061 0.939 24 C 0.067 3.933 25 N -0.890 5.890 26 Si 0.908 3.092 27 H -0.277 1.277 28 H -0.273 1.273 29 H -0.282 1.282 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.196 0.804 43 H 0.188 0.812 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.980 12.732 21.075 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.360 5.360 3 C -0.064 4.064 4 C 0.317 3.683 5 O -0.393 6.393 6 C -0.057 4.057 7 H 0.135 0.865 8 C -0.156 4.156 9 C -0.175 4.175 10 C -0.075 4.075 11 N -0.161 5.161 12 C 0.180 3.820 13 N -0.329 5.329 14 C 0.056 3.944 15 N -0.253 5.253 16 C 0.103 3.897 17 C -0.308 4.308 18 C -0.120 4.120 19 N -0.051 5.051 20 N -0.117 5.117 21 C 0.146 3.854 22 C -0.573 4.573 23 H 0.080 0.920 24 C -0.137 4.137 25 N -0.528 5.528 26 Si 0.735 3.265 27 H -0.203 1.203 28 H -0.198 1.198 29 H -0.208 1.208 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.212 0.788 43 H 0.205 0.795 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.180 11.351 19.616 24.845 hybrid contribution 1.149 0.756 0.289 1.405 sum -9.032 12.106 19.905 24.987 Atomic orbital electron populations 1.21602 0.79266 1.03220 1.01484 1.47659 1.06894 1.06384 1.75092 1.21827 0.96963 0.85046 1.02514 1.20235 0.89172 0.83144 0.75700 1.90696 1.69813 1.31168 1.47604 1.22629 0.92790 0.94005 0.96282 0.86530 1.22702 0.96972 1.02329 0.93601 1.22805 0.96812 0.98716 0.99198 1.22991 0.90454 1.00317 0.93690 1.59749 1.27573 1.29420 0.99374 1.19472 0.84908 0.87252 0.90344 1.68140 1.28448 1.21627 1.14722 1.24449 0.88018 0.97261 0.84719 1.67516 1.19971 0.98800 1.39049 1.19026 0.92952 0.88675 0.89065 1.19633 1.17006 0.96952 0.97222 1.23551 0.98746 0.91469 0.98187 1.76993 1.17357 1.14522 0.96255 1.49520 1.47107 1.02508 1.12614 1.19824 0.95339 0.99608 0.70596 1.21226 0.92337 1.47652 0.96084 0.92043 1.24903 0.99293 0.94512 0.94969 1.69922 1.36729 1.45995 1.00159 0.86334 0.83786 0.78428 0.77986 1.20284 1.19758 1.20792 0.92957 0.91323 0.90577 0.91876 0.91010 0.91266 0.89813 0.89582 0.89351 0.90502 0.88588 0.90712 0.78751 0.79511 0.92286 0.92647 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.45 59.85 0.63 1.36 16 2 N -0.62 -6.19 3.27 -189.52 -0.62 -6.81 16 3 C 0.08 0.50 9.83 59.85 0.59 1.09 16 4 C 0.53 7.00 6.91 -10.98 -0.08 6.93 16 5 O -0.52 -9.05 16.21 5.56 0.09 -8.96 16 6 C 0.05 0.61 1.54 -67.34 -0.10 0.50 16 7 H 0.12 1.29 5.25 -51.93 -0.27 1.01 16 8 C -0.12 -0.92 6.33 -24.59 -0.16 -1.07 16 9 C -0.14 -1.01 6.94 -24.90 -0.17 -1.18 16 10 C 0.05 0.53 5.96 -2.83 -0.02 0.52 16 11 N -0.44 -6.11 4.49 -163.44 -0.73 -6.85 16 12 C 0.43 7.14 6.17 -154.84 -0.96 6.18 16 13 N -0.60 -9.58 8.32 -13.62 -0.11 -9.69 16 14 C 0.35 5.80 12.24 -92.11 -1.13 4.68 16 15 N -0.53 -11.20 10.47 -13.97 -0.15 -11.34 16 16 C 0.35 7.87 8.04 -156.23 -1.26 6.61 16 17 C -0.29 -5.59 5.46 -106.82 -0.58 -6.17 16 18 C 0.08 1.37 11.35 -17.11 -0.19 1.18 16 19 N -0.24 -5.18 12.45 30.80 0.38 -4.79 16 20 N -0.33 -8.03 3.63 -61.64 -0.22 -8.26 16 21 C 0.26 7.06 6.19 -5.19 -0.03 7.03 16 22 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 23 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 24 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 25 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 26 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.41 8.07 -51.93 -0.42 0.00 16 32 H 0.08 0.81 7.36 -51.93 -0.38 0.43 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.29 8.03 -51.93 -0.42 -0.13 16 35 H 0.07 0.36 5.99 -51.93 -0.31 0.05 16 36 H 0.08 0.70 8.05 -51.93 -0.42 0.29 16 37 H 0.09 0.46 7.55 -51.93 -0.39 0.07 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.87 7.10 -51.93 -0.37 0.50 16 42 H 0.20 2.38 8.06 -52.49 -0.42 1.96 16 43 H 0.19 2.57 7.98 -52.48 -0.42 2.15 16 44 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 45 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 381.81 15.07 5.75 5.75 Total: -1.00 -36.12 381.81 -10.10 -46.23 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.33 Total: -0.69 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: -3.88 Total: 13.90 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.72 Total: -72.76 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.12 -10.10 -46.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200206.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.215 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds