Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 111.00137 * 2 1 4 4 C 1.46901 * 111.00386 * 123.95315 * 2 1 3 5 5 C 1.53001 * 110.01673 * 299.85766 * 4 2 1 6 6 N 1.46507 * 109.46913 * 183.29621 * 5 4 2 7 7 C 1.38104 * 119.99901 * 174.96142 * 6 5 4 8 8 N 1.32869 * 120.81360 * 0.46045 * 7 6 5 9 9 C 1.32124 * 121.19708 * 180.02562 * 8 7 6 10 10 N 1.31509 * 122.63895 * 359.74531 * 9 8 7 11 11 C 1.33195 * 120.68711 * 359.97438 * 10 9 8 12 12 C 1.40810 * 120.81156 * 179.97438 * 7 6 5 13 13 C 1.41163 * 134.70359 * 0.29522 * 12 7 6 14 14 N 1.30246 * 108.47417 * 179.70889 * 13 12 7 15 15 N 1.36320 * 134.61286 * 180.02562 * 11 10 9 16 16 C 1.46490 * 125.87453 * 0.03242 * 15 11 10 17 17 C 1.50706 * 109.46968 * 90.00418 * 16 15 11 18 18 H 1.08001 * 119.99911 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00194 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99850 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99984 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.46830 * 90.00476 * 21 19 17 23 23 H 1.48496 * 109.47227 * 210.00103 * 21 19 17 24 24 H 1.48500 * 109.47355 * 330.00694 * 21 19 17 25 25 C 1.54267 * 110.02952 * 61.24953 * 4 2 1 26 26 C 1.54959 * 104.16323 * 95.75477 * 25 4 2 27 27 C 1.54892 * 102.77777 * 37.88647 * 26 25 4 28 28 C 1.53880 * 110.03375 * 178.46173 * 4 2 1 29 29 H 1.09009 * 109.46539 * 291.77867 * 1 2 3 30 30 H 1.08997 * 109.47396 * 51.77401 * 1 2 3 31 31 H 1.08996 * 109.46887 * 171.78011 * 1 2 3 32 32 H 1.08999 * 109.47741 * 183.95718 * 3 2 1 33 33 H 1.09006 * 109.47319 * 303.95936 * 3 2 1 34 34 H 1.09000 * 109.47465 * 63.95341 * 3 2 1 35 35 H 1.08990 * 109.47434 * 63.29484 * 5 4 2 36 36 H 1.09003 * 109.46842 * 303.28860 * 5 4 2 37 37 H 0.97004 * 119.99774 * 354.96253 * 6 5 4 38 38 H 1.07991 * 118.68008 * 179.77053 * 9 8 7 39 39 H 1.08005 * 125.76288 * 359.70755 * 13 12 7 40 40 H 1.08997 * 109.47441 * 210.00031 * 16 15 11 41 41 H 1.09005 * 109.47629 * 330.00643 * 16 15 11 42 42 H 0.97003 * 119.99839 * 179.97438 * 20 19 17 43 43 H 1.09003 * 110.48238 * 214.40306 * 25 4 2 44 44 H 1.08998 * 110.48641 * 337.04289 * 25 4 2 45 45 H 1.09004 * 110.71919 * 279.57330 * 26 25 4 46 46 H 1.08999 * 110.92442 * 156.29780 * 26 25 4 47 47 H 1.08999 * 110.48074 * 203.40767 * 27 26 25 48 48 H 1.09000 * 110.48635 * 80.76208 * 27 26 25 49 49 H 1.08997 * 110.03101 * 359.95580 * 28 4 2 50 50 H 1.08999 * 110.02783 * 121.38489 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.5151 -0.1481 2.4523 6 7 2.1099 -0.8724 3.5783 7 6 1.9044 -0.4296 4.8701 8 7 1.1626 0.6462 5.1109 9 6 0.9614 1.0768 6.3437 10 7 1.4700 0.4756 7.3969 11 6 2.2234 -0.6143 7.2597 12 6 2.4674 -1.1129 5.9650 13 6 3.2818 -2.2568 6.1094 14 7 3.5147 -2.4404 7.3776 15 7 2.8752 -1.4426 8.1242 16 6 2.9020 -1.3118 9.5830 17 6 1.7510 -2.0817 10.1776 18 1 1.0676 -2.6147 9.5332 19 6 1.5697 -2.1047 11.5442 20 7 0.5654 -2.7770 12.0630 21 14 2.7512 -1.1823 12.6588 22 1 2.2567 0.2026 12.8664 23 1 2.8412 -1.8771 13.9681 24 1 4.0949 -1.1387 12.0281 25 6 1.5341 -2.2350 1.0443 26 6 2.7182 -2.9615 0.3576 27 6 3.9542 -2.2632 0.9771 28 6 3.5336 -0.7837 1.0944 29 1 -0.3633 0.3813 0.9544 30 1 -0.3634 0.6359 -0.8073 31 1 -0.3633 -1.0171 -0.1469 32 1 3.0828 1.3433 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.7045 1.8724 0.9233 35 1 0.4288 -0.2156 2.5099 36 1 1.8169 0.8985 2.4935 37 1 2.6481 -1.6631 3.4164 38 1 0.3546 1.9577 6.4924 39 1 3.6497 -2.8754 5.3041 40 1 3.8417 -1.7096 9.9663 41 1 2.8147 -0.2599 9.8553 42 1 0.4381 -2.7936 13.0245 43 1 1.3611 -2.6444 2.0396 44 1 0.6329 -2.3139 0.4364 45 1 2.6896 -2.8105 -0.7216 46 1 2.7144 -4.0247 0.5975 47 1 4.8180 -2.3634 0.3200 48 1 4.1725 -2.6770 1.9616 49 1 3.8893 -0.2246 0.2290 50 1 3.9378 -0.3521 2.0101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = 131.797016 kcal Electronic energy + Delta-G solvation = -30642.881262 eV Core-core repulsion = 26707.072521 eV Total energy + Delta-G solvation = -3935.808741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.202 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.49058 -40.43647 -38.42900 -35.99549 -35.46197 -33.72940 -32.28994 -31.48102 -30.31169 -29.82512 -28.49529 -27.75317 -27.25882 -25.31487 -24.00730 -23.59286 -22.99844 -22.20638 -20.92650 -20.11981 -18.96414 -18.03865 -17.43338 -17.11527 -16.84102 -16.24631 -15.96290 -15.40720 -15.17074 -14.81375 -14.58444 -14.52222 -14.20550 -14.04190 -13.97416 -13.69861 -13.44634 -13.39191 -12.96831 -12.48738 -12.43504 -12.34619 -12.19671 -12.05607 -11.52808 -11.45171 -11.39686 -11.23092 -11.17584 -11.13834 -11.02579 -10.81884 -10.73563 -10.68788 -10.26414 -10.15270 -9.69661 -9.30710 -8.75972 -8.73652 -8.62644 -8.27200 -7.67692 -6.22507 -4.25091 1.24606 1.88110 2.81110 2.95953 3.03242 3.20962 3.26563 3.28446 3.58413 4.09273 4.22327 4.25938 4.33281 4.47003 4.56874 4.65774 4.76421 4.87643 4.93305 4.96094 4.99381 5.06125 5.09508 5.14746 5.20321 5.22825 5.23701 5.36010 5.45266 5.47098 5.52400 5.59824 5.64116 5.64985 5.65586 5.70788 5.80345 5.82717 5.89712 6.07523 6.22492 6.48746 6.51494 6.66380 6.70948 6.84937 6.89488 7.18377 7.30488 7.40890 7.80053 8.10957 8.30767 8.74031 8.79941 9.32296 10.90268 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.002507 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.183443 B =11167.060085 C =11730.366057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.523 5.523 3 C 0.013 3.987 4 C 0.096 3.904 5 C 0.107 3.893 6 N -0.699 5.699 7 C 0.510 3.490 8 N -0.618 5.618 9 C 0.369 3.631 10 N -0.557 5.557 11 C 0.367 3.633 12 C -0.336 4.336 13 C 0.073 3.927 14 N -0.240 5.240 15 N -0.332 5.332 16 C 0.237 3.763 17 C -0.538 4.538 18 H 0.078 0.922 19 C 0.080 3.920 20 N -0.888 5.888 21 Si 0.875 3.125 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.264 1.264 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.121 4.121 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.410 0.590 38 H 0.195 0.805 39 H 0.183 0.817 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.269 0.731 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.078 0.922 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.190 5.620 -27.185 28.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.246 5.246 3 C -0.135 4.135 4 C 0.006 3.994 5 C -0.019 4.019 6 N -0.334 5.334 7 C 0.257 3.743 8 N -0.349 5.349 9 C 0.076 3.924 10 N -0.282 5.282 11 C 0.120 3.880 12 C -0.354 4.354 13 C -0.123 4.123 14 N -0.055 5.055 15 N -0.118 5.118 16 C 0.118 3.882 17 C -0.576 4.576 18 H 0.096 0.904 19 C -0.124 4.124 20 N -0.525 5.525 21 Si 0.700 3.300 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.189 1.189 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.158 4.158 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.212 0.788 39 H 0.200 0.800 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.097 0.903 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.282 5.447 -26.235 27.135 hybrid contribution 0.299 0.347 0.790 0.913 sum 4.581 5.794 -25.446 26.496 Atomic orbital electron populations 1.22550 0.87391 1.02691 1.00997 1.62385 1.08007 1.13772 1.40457 1.22528 1.01234 0.88798 1.00975 1.22010 0.95442 0.94324 0.87665 1.21954 0.98366 0.96640 0.84905 1.44264 1.55762 1.31502 1.01837 1.17906 0.85479 0.86996 0.83912 1.67955 1.24725 1.16721 1.25470 1.24409 0.91321 0.95697 0.81017 1.67504 1.15407 1.10240 1.35031 1.18891 0.91388 0.90294 0.87468 1.19577 1.15536 1.05362 0.94934 1.23372 0.98197 0.95923 0.94788 1.76943 1.16199 1.08818 1.03579 1.48946 1.37475 1.17848 1.07541 1.20083 0.99768 0.98733 0.69572 1.21107 1.11183 1.32461 0.92874 0.90411 1.24771 0.95289 0.94855 0.97514 1.69873 1.29337 1.40786 1.12494 0.86874 0.81766 0.80585 0.80726 1.19489 1.20517 1.18858 1.22590 0.99183 0.92744 1.01219 1.22440 0.93971 0.98814 1.00341 1.22362 0.98175 0.94765 1.00910 1.22383 0.93045 0.97710 1.02695 0.94611 0.91308 0.90908 0.90953 0.91288 0.94789 0.91496 0.91039 0.75265 0.78839 0.79993 0.93044 0.93099 0.92140 0.90926 0.90493 0.91053 0.91602 0.91408 0.91664 0.90326 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.01 60.07 0.54 0.62 16 2 N -0.52 -3.80 4.80 -234.09 -1.12 -4.92 16 3 C 0.01 0.08 8.93 60.06 0.54 0.62 16 4 C 0.10 0.72 0.33 -130.48 -0.04 0.67 16 5 C 0.11 1.02 3.82 -4.04 -0.02 1.00 16 6 N -0.70 -7.67 4.50 -60.08 -0.27 -7.94 16 7 C 0.51 7.77 7.55 -154.85 -1.17 6.60 16 8 N -0.62 -9.76 9.69 -13.62 -0.13 -9.89 16 9 C 0.37 6.16 12.24 -92.11 -1.13 5.03 16 10 N -0.56 -11.60 10.47 -13.97 -0.15 -11.75 16 11 C 0.37 8.00 8.04 -156.23 -1.26 6.74 16 12 C -0.34 -6.03 6.14 -106.82 -0.66 -6.68 16 13 C 0.07 1.21 11.87 -17.11 -0.20 1.00 16 14 N -0.24 -5.04 12.45 30.80 0.38 -4.66 16 15 N -0.33 -7.80 3.63 -61.64 -0.22 -8.02 16 16 C 0.24 5.97 5.26 -5.20 -0.03 5.94 16 17 C -0.54 -15.69 9.94 -34.44 -0.34 -16.04 16 18 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 19 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 20 N -0.89 -27.12 13.96 55.43 0.77 -26.35 16 21 Si 0.87 20.93 27.47 -169.99 -4.67 16.26 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 25 C -0.12 -0.86 5.57 -25.03 -0.14 -1.00 16 26 C -0.12 -0.76 6.91 -24.70 -0.17 -0.93 16 27 C -0.12 -0.79 6.63 -25.07 -0.17 -0.95 16 28 C -0.12 -0.85 4.96 -25.61 -0.13 -0.98 16 29 H 0.04 0.27 6.21 -51.92 -0.32 -0.06 16 30 H 0.07 0.40 8.05 -51.93 -0.42 -0.02 16 31 H 0.07 0.47 6.18 -51.93 -0.32 0.15 16 32 H 0.07 0.46 6.18 -51.93 -0.32 0.14 16 33 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 34 H 0.03 0.25 6.38 -51.93 -0.33 -0.08 16 35 H 0.07 0.71 6.55 -51.93 -0.34 0.37 16 36 H 0.07 0.75 6.39 -51.93 -0.33 0.42 16 37 H 0.41 3.80 6.64 -40.82 -0.27 3.53 16 38 H 0.20 2.44 8.06 -52.49 -0.42 2.02 16 39 H 0.18 2.05 8.06 -52.48 -0.42 1.63 16 40 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 41 H 0.05 1.26 7.57 -51.93 -0.39 0.87 16 42 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.07 0.57 6.89 -51.93 -0.36 0.22 16 44 H 0.08 0.55 5.85 -51.93 -0.30 0.25 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.39 7.93 -51.93 -0.41 -0.02 16 49 H 0.08 0.56 6.20 -51.93 -0.32 0.23 16 50 H 0.07 0.56 7.18 -51.93 -0.37 0.19 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -33.88 386.76 -11.36 -45.24 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.31 Total: 2.35 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -4.47 Total: 3.86 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -0.74 Total: -73.53 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.88 -11.36 -45.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.038 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds