Wall clock time and date at job start Tue Mar 31 2020 05:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33647 * 122.74659 * 2 1 4 4 S 1.76199 * 107.92238 * 180.02562 * 3 2 1 5 5 C 1.70980 * 90.28367 * 359.97438 * 4 3 2 6 6 C 1.50703 * 124.91809 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46981 * 270.02784 * 6 5 4 8 8 N 1.46503 * 109.47004 * 179.97438 * 7 6 5 9 9 C 1.38107 * 119.99962 * 179.97438 * 8 7 6 10 10 N 1.32858 * 120.81448 * 359.97323 * 9 8 7 11 11 C 1.32123 * 121.19451 * 180.02562 * 10 9 8 12 12 N 1.31510 * 122.64648 * 0.02562 * 11 10 9 13 13 C 1.33199 * 120.68256 * 0.02562 * 12 11 10 14 14 C 1.40818 * 120.81214 * 179.97438 * 9 8 7 15 15 C 1.41168 * 134.69640 * 0.03213 * 14 9 8 16 16 N 1.30249 * 108.46928 * 180.20253 * 15 14 9 17 17 N 1.36308 * 134.61923 * 179.97438 * 13 12 11 18 18 C 1.46510 * 125.87260 * 0.07553 * 17 13 12 19 19 C 1.50695 * 109.46809 * 90.00139 * 18 17 13 20 20 H 1.07999 * 120.00635 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99588 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99924 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47128 * 59.99465 * 23 21 19 25 25 H 1.48495 * 109.47062 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46817 * 299.99843 * 23 21 19 27 27 N 1.29031 * 110.16654 * 0.24412 * 5 4 3 28 28 H 1.08994 * 109.46668 * 90.00373 * 1 2 3 29 29 H 1.08996 * 109.46713 * 210.00198 * 1 2 3 30 30 H 1.08999 * 109.47020 * 330.00527 * 1 2 3 31 31 H 1.07995 * 126.03492 * 0.03418 * 3 2 1 32 32 H 1.08999 * 109.47269 * 150.02157 * 6 5 4 33 33 H 1.09004 * 109.46636 * 30.02307 * 6 5 4 34 34 H 1.08999 * 109.47631 * 59.99595 * 7 6 5 35 35 H 1.09004 * 109.47046 * 299.99272 * 7 6 5 36 36 H 0.97007 * 119.99894 * 359.97438 * 8 7 6 37 37 H 1.08001 * 118.67993 * 179.97438 * 11 10 9 38 38 H 1.08002 * 125.76328 * 359.93061 * 15 14 9 39 39 H 1.08997 * 109.46820 * 210.00471 * 18 17 13 40 40 H 1.08996 * 109.46904 * 330.00105 * 18 17 13 41 41 H 0.97001 * 119.99480 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1241 0.0000 4 16 3.9333 0.6733 -0.0007 5 6 3.5040 -0.9818 -0.0002 6 6 4.4836 -2.1270 -0.0010 7 6 4.8143 -2.5142 -1.4438 8 7 5.7670 -3.6272 -1.4446 9 6 6.2149 -4.1519 -2.6410 10 7 5.7920 -3.6602 -3.8006 11 6 6.2151 -4.1568 -4.9495 12 7 7.0687 -5.1548 -5.0197 13 6 7.5501 -5.7165 -3.9120 14 6 7.1309 -5.2212 -2.6618 15 6 7.7869 -5.9860 -1.6730 16 7 8.5445 -6.8641 -2.2658 17 7 8.4200 -6.7339 -3.6548 18 6 9.1139 -7.5447 -4.6586 19 6 10.4316 -6.8993 -5.0021 20 1 10.7233 -5.9776 -4.5207 21 6 11.2648 -7.4854 -5.9312 22 7 10.9098 -8.6080 -6.5172 23 14 12.8986 -6.6858 -6.3566 24 1 13.7358 -6.5896 -5.1339 25 1 13.6018 -7.5075 -7.3742 26 1 12.6570 -5.3248 -6.8995 27 7 2.2200 -1.1083 -0.0047 28 1 -0.3632 -0.0001 -1.0276 29 1 -0.3632 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.8391 2.1308 0.0005 32 1 4.0438 -2.9817 0.5129 33 1 5.3964 -1.8247 0.5123 34 1 5.2541 -1.6595 -1.9578 35 1 3.9015 -2.8166 -1.9572 36 1 6.0833 -3.9955 -0.6047 37 1 5.8444 -3.7264 -5.8681 38 1 7.6818 -5.8609 -0.6054 39 1 9.2915 -8.5433 -4.2595 40 1 8.4993 -7.6161 -5.5560 41 1 11.4962 -9.0206 -7.1705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:42 Heat of formation + Delta-G solvation = 156.168560 kcal Electronic energy + Delta-G solvation = -25548.277994 eV Core-core repulsion = 21784.612765 eV Total energy + Delta-G solvation = -3763.665229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.111 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37655 -40.28159 -38.51655 -36.83647 -34.16684 -33.53181 -32.15189 -31.28981 -30.72735 -29.01966 -27.96132 -27.23003 -25.10228 -23.95619 -23.26446 -22.50530 -21.89936 -20.19877 -20.04102 -18.16378 -17.76547 -17.38687 -16.66494 -16.35553 -15.82134 -15.63881 -15.35623 -14.96780 -14.83995 -14.52735 -14.16452 -13.81814 -13.75035 -13.42267 -13.28566 -13.12873 -13.02070 -12.82331 -12.20939 -12.19305 -12.02605 -11.69360 -11.64214 -11.15167 -10.97140 -10.92949 -10.73804 -10.27739 -10.08430 -10.03047 -9.84723 -9.78742 -9.26558 -9.09345 -8.67531 -8.58169 -8.22187 -7.64470 -6.20668 -4.27196 0.28704 0.96469 1.30907 1.35559 1.94676 2.35765 2.89534 3.02208 3.10388 3.27186 3.30195 3.35146 3.68841 4.32003 4.40551 4.44781 4.45880 4.67466 4.69029 4.74928 4.75412 4.85300 4.98666 5.11441 5.14548 5.18093 5.19285 5.27709 5.45416 5.49820 5.60701 5.69875 5.74030 5.85521 6.31037 6.67383 6.89064 7.04259 7.11544 7.21851 7.35918 7.49882 7.72742 7.91184 7.93056 8.23579 8.72630 8.83380 9.37641 10.87490 Molecular weight = 344.11amu Principal moments of inertia in cm(-1) A = 0.024626 B = 0.001895 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.735944 B =14775.012435 C =14905.037051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.068 3.932 3 C -0.266 4.266 4 S 0.129 5.871 5 C 0.058 3.942 6 C -0.059 4.059 7 C 0.141 3.859 8 N -0.708 5.708 9 C 0.510 3.490 10 N -0.618 5.618 11 C 0.367 3.633 12 N -0.553 5.553 13 C 0.363 3.637 14 C -0.336 4.336 15 C 0.068 3.932 16 N -0.243 5.243 17 N -0.332 5.332 18 C 0.264 3.736 19 C -0.534 4.534 20 H 0.061 0.939 21 C 0.067 3.933 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.274 1.274 27 N -0.467 5.467 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.177 0.823 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.410 0.590 37 H 0.195 0.805 38 H 0.183 0.817 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.389 18.807 15.381 30.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.405 4.405 4 S 0.384 5.616 5 C -0.220 4.220 6 C -0.100 4.100 7 C 0.015 3.985 8 N -0.342 5.342 9 C 0.257 3.743 10 N -0.348 5.348 11 C 0.073 3.927 12 N -0.278 5.278 13 C 0.115 3.885 14 C -0.354 4.354 15 C -0.127 4.127 16 N -0.058 5.058 17 N -0.118 5.118 18 C 0.147 3.853 19 C -0.572 4.572 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.529 5.529 23 Si 0.734 3.266 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 N -0.182 5.182 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.194 0.806 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.211 0.789 38 H 0.200 0.800 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.004 17.995 14.400 28.642 hybrid contribution -0.094 0.646 0.587 0.878 sum -17.098 18.641 14.987 29.401 Atomic orbital electron populations 1.20375 0.87006 1.03368 1.03160 1.20333 0.98367 0.86419 1.01297 1.26857 0.95213 1.04064 1.14338 1.84119 1.07193 1.02692 1.67550 1.26652 0.93878 0.98083 1.03434 1.20455 0.96213 0.94800 0.98545 1.21185 0.93406 0.89645 0.94276 1.44159 1.48205 1.36891 1.04929 1.17839 0.84786 0.84916 0.86714 1.67944 1.33896 1.35618 0.97363 1.24411 0.86912 0.86854 0.94522 1.67520 1.16257 1.14011 1.30002 1.18941 0.90735 0.89693 0.89139 1.19603 1.12241 1.07156 0.96427 1.23370 0.95832 0.94345 0.99154 1.76941 1.19278 1.21344 0.88280 1.49466 1.32825 1.25691 1.03840 1.19795 0.92076 0.90037 0.83410 1.21206 1.02152 1.09619 1.24271 0.92111 1.24900 0.98686 0.94850 0.95251 1.69911 1.37804 1.17792 1.27381 0.86401 0.82603 0.79344 0.78229 1.20037 1.20894 1.19964 1.66121 1.04446 1.31730 1.15891 0.90459 0.90489 0.90727 0.80599 0.87885 0.88771 0.91100 0.90623 0.75333 0.78856 0.80037 0.92800 0.92229 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.31 36.01 0.37 -0.09 16 2 C 0.07 0.57 6.74 -84.22 -0.57 0.00 16 3 C -0.27 -1.86 11.13 29.12 0.32 -1.54 16 4 S 0.13 0.92 23.18 -107.50 -2.49 -1.57 16 5 C 0.06 0.49 6.64 -13.45 -0.09 0.40 16 6 C -0.06 -0.40 5.91 -27.88 -0.16 -0.56 16 7 C 0.14 1.28 5.71 -4.04 -0.02 1.26 16 8 N -0.71 -7.42 5.68 -60.08 -0.34 -7.76 16 9 C 0.51 7.78 7.55 -154.85 -1.17 6.61 16 10 N -0.62 -9.90 9.69 -13.62 -0.13 -10.03 16 11 C 0.37 6.22 12.24 -92.11 -1.13 5.09 16 12 N -0.55 -11.72 10.47 -13.97 -0.15 -11.87 16 13 C 0.36 8.02 8.04 -156.24 -1.26 6.76 16 14 C -0.34 -6.05 6.14 -106.82 -0.66 -6.70 16 15 C 0.07 1.13 11.87 -17.11 -0.20 0.93 16 16 N -0.24 -5.16 12.45 30.80 0.38 -4.78 16 17 N -0.33 -7.95 3.63 -61.64 -0.22 -8.17 16 18 C 0.26 7.06 6.19 -5.19 -0.03 7.03 16 19 C -0.53 -15.28 9.39 -34.44 -0.32 -15.61 16 20 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 21 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 22 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 23 Si 0.91 21.75 29.54 -169.99 -5.02 16.73 16 24 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 N -0.47 -4.68 10.53 -8.05 -0.08 -4.77 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.41 3.18 8.34 -40.82 -0.34 2.84 16 37 H 0.20 2.50 8.06 -52.49 -0.42 2.07 16 38 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.05 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 375.00 15.07 5.65 5.65 Total: -1.00 -34.81 375.00 -11.64 -46.45 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.96 Total: -0.15 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -5.02 Total: 5.37 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: 0.19 Total: -72.48 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.49 Total: -1.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.81 -11.64 -46.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.623 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds