Wall clock time and date at job start Tue Mar 31 2020 05:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48502 * 109.46939 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47278 * 299.99891 * 3 2 1 6 6 H 1.48492 * 109.47113 * 60.00138 * 3 2 1 7 7 C 1.37884 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99602 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00050 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99554 * 270.00121 * 10 9 7 12 12 C 1.50703 * 109.46721 * 269.99410 * 11 10 9 13 13 C 1.34515 * 125.78912 * 90.00304 * 12 11 10 14 14 C 1.41386 * 106.84217 * 179.97438 * 13 12 11 15 15 C 1.34520 * 106.83826 * 0.02562 * 14 13 12 16 16 O 1.34304 * 108.42050 * 359.73009 * 15 14 13 17 17 C 1.34774 * 120.00035 * 89.99004 * 10 9 7 18 18 O 1.21275 * 120.00226 * 0.02562 * 17 10 9 19 19 C 1.50709 * 119.99849 * 179.97438 * 17 10 9 20 20 N 1.46893 * 109.47010 * 180.02562 * 19 17 10 21 21 C 1.46985 * 111.00054 * 58.14536 * 20 19 17 22 22 C 1.53407 * 109.65720 * 165.10929 * 21 20 19 23 23 N 1.46518 * 108.23532 * 49.65912 * 22 21 20 24 24 C 1.36042 * 128.66936 * 163.59117 * 23 22 21 25 25 C 1.34931 * 106.64543 * 180.20246 * 24 23 22 26 26 N 1.34364 * 108.09065 * 359.97258 * 25 24 23 27 27 C 1.29881 * 109.20152 * 359.95053 * 26 25 24 28 28 C 1.47324 * 111.00729 * 293.95985 * 20 19 17 29 29 H 0.96998 * 119.99969 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47797 * 59.99893 * 9 7 2 31 31 H 1.09007 * 109.46938 * 299.99547 * 9 7 2 32 32 H 1.08995 * 109.47950 * 29.99402 * 11 10 9 33 33 H 1.09002 * 109.46989 * 149.99996 * 11 10 9 34 34 H 1.07998 * 126.57659 * 0.04018 * 13 12 11 35 35 H 1.07998 * 126.58211 * 179.97438 * 14 13 12 36 36 H 1.07997 * 125.78615 * 180.02562 * 15 14 13 37 37 H 1.09005 * 109.46635 * 60.00616 * 19 17 10 38 38 H 1.08996 * 109.47206 * 300.00947 * 19 17 10 39 39 H 1.09000 * 109.43808 * 285.16840 * 21 20 19 40 40 H 1.09006 * 109.43814 * 45.09086 * 21 20 19 41 41 H 1.09003 * 109.70936 * 289.97380 * 22 21 20 42 42 H 1.08994 * 109.70674 * 169.34978 * 22 21 20 43 43 H 1.08003 * 126.67552 * 0.20850 * 24 23 22 44 44 H 1.08004 * 125.95884 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.73337 * 54.62282 * 28 20 19 46 46 H 1.09006 * 109.77197 * 293.94899 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 2.6798 -4.1689 -1.2701 12 6 1.7633 -5.2829 -1.7062 13 6 0.6713 -5.1459 -2.4796 14 6 0.1166 -6.4368 -2.6375 15 6 0.9026 -7.2853 -1.9507 16 8 1.9016 -6.5816 -1.3933 17 6 2.6400 -4.1254 1.1658 18 8 2.2450 -3.6651 2.2160 19 6 3.6189 -5.2713 1.1660 20 7 3.9358 -5.6443 2.5510 21 6 2.7195 -6.0160 3.2879 22 6 3.1028 -6.7440 4.5827 23 7 4.1168 -5.9446 5.2751 24 6 4.5245 -6.0258 6.5705 25 6 5.4730 -5.0807 6.7371 26 7 5.6357 -4.4419 5.5664 27 6 4.8296 -4.9527 4.6854 28 6 4.6632 -4.5618 3.2362 29 1 -0.4850 0.8400 0.0004 30 1 0.6246 -2.5564 -0.8919 31 1 0.6240 -2.5575 0.8881 32 1 2.6881 -3.3870 -2.0294 33 1 3.6892 -4.5590 -1.1392 34 1 0.2917 -4.2264 -2.9001 35 1 -0.7687 -6.6924 -3.2007 36 1 0.7578 -8.3522 -1.8662 37 1 4.5318 -4.9693 0.6527 38 1 3.1785 -6.1254 0.6517 39 1 2.1537 -5.1167 3.5311 40 1 2.1078 -6.6736 2.6701 41 1 3.5089 -7.7272 4.3452 42 1 2.2235 -6.8524 5.2175 43 1 4.1599 -6.7131 7.3196 44 1 6.0083 -4.8738 7.6521 45 1 4.0936 -3.6350 3.1680 46 1 5.6423 -4.4269 2.7765 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097201497.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:14 Heat of formation + Delta-G solvation = 72.996467 kcal Electronic energy + Delta-G solvation = -30792.496003 eV Core-core repulsion = 26686.011633 eV Total energy + Delta-G solvation = -4106.484370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.43406 -42.16174 -39.78962 -37.11293 -35.27853 -33.87961 -32.91441 -32.76474 -30.62373 -30.26076 -29.55429 -28.15228 -26.64937 -25.47969 -24.57526 -23.15865 -22.08024 -21.58982 -21.18163 -20.60204 -19.08757 -18.67131 -17.41789 -17.30673 -16.75118 -16.40205 -16.12393 -15.94892 -15.59190 -15.18915 -14.81030 -14.70074 -14.27593 -14.21198 -13.75215 -13.71874 -13.62300 -13.05847 -12.83295 -12.72753 -12.60525 -12.35833 -12.29258 -12.24801 -11.78325 -11.61872 -11.47362 -11.31550 -11.20541 -10.93615 -10.70194 -10.28713 -9.91206 -9.83747 -9.80079 -9.73160 -9.50236 -8.52450 -8.43248 -8.34260 -7.97394 -7.93448 -6.13172 -4.18598 1.79342 2.17937 2.72545 2.84800 2.95934 3.21763 3.25863 3.28069 3.34740 3.38369 3.64783 3.80857 4.38164 4.48286 4.55665 4.78223 4.79343 4.89008 5.02254 5.06868 5.13034 5.16059 5.22677 5.27036 5.39652 5.45162 5.53334 5.56383 5.59903 5.76530 5.82334 5.91599 5.93834 6.05371 6.09160 6.20054 6.34826 6.61672 6.68813 6.72767 6.87611 6.92418 7.20272 7.26704 7.31530 7.36362 7.82138 8.10711 8.13935 8.25480 8.70989 8.88575 9.47427 10.95012 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007756 B = 0.004343 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3609.392632 B = 6445.040659 C = 9401.395582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.246 3.754 10 N -0.588 5.588 11 C 0.189 3.811 12 C -0.029 4.029 13 C -0.191 4.191 14 C -0.213 4.213 15 C -0.049 4.049 16 O -0.178 6.178 17 C 0.478 3.522 18 O -0.534 6.534 19 C 0.031 3.969 20 N -0.515 5.515 21 C 0.020 3.980 22 C 0.113 3.887 23 N -0.453 5.453 24 C -0.060 4.060 25 C -0.035 4.035 26 N -0.492 5.492 27 C 0.227 3.773 28 C 0.124 3.876 29 H 0.263 0.737 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.198 0.802 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.172 0.828 44 H 0.168 0.832 45 H 0.095 0.905 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -17.912 0.320 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.078 0.922 9 C 0.127 3.873 10 N -0.319 5.319 11 C 0.065 3.935 12 C -0.080 4.080 13 C -0.211 4.211 14 C -0.232 4.232 15 C -0.117 4.117 16 O -0.074 6.074 17 C 0.264 3.736 18 O -0.412 6.412 19 C -0.100 4.100 20 N -0.238 5.238 21 C -0.109 4.109 22 C -0.010 4.010 23 N -0.135 5.135 24 C -0.193 4.193 25 C -0.183 4.183 26 N -0.211 5.211 27 C -0.037 4.037 28 C -0.005 4.005 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.215 0.785 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.189 0.811 44 H 0.185 0.815 45 H 0.113 0.887 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.985 -17.515 0.861 18.231 hybrid contribution -1.121 0.828 0.025 1.394 sum 3.864 -16.687 0.886 17.151 Atomic orbital electron populations 1.69938 1.06041 1.27045 1.50113 1.24924 0.94852 0.99275 0.94852 0.86450 0.80097 0.83314 0.77646 1.19650 1.20932 1.20859 1.21422 0.93404 0.90438 1.51541 0.92234 1.19341 0.87401 0.81947 0.98602 1.48458 1.45627 1.34332 1.03477 1.19920 0.94042 0.90726 0.88861 1.23247 1.00792 0.82719 1.01239 1.21719 0.97006 0.98919 1.03476 1.21844 1.02861 0.93247 1.05290 1.23939 0.89767 0.97808 1.00145 1.83985 1.44537 1.18645 1.60234 1.21607 0.82999 0.84603 0.84403 1.90612 1.58620 1.61672 1.30297 1.22417 0.99476 0.97382 0.90722 1.62580 1.22016 1.37638 1.01614 1.22735 0.92643 1.01921 0.93552 1.22092 0.90488 0.94893 0.93512 1.45343 1.30640 1.28185 1.09372 1.22445 1.03888 1.06194 0.86795 1.22340 1.01463 0.97327 0.97160 1.69926 1.23164 1.27564 1.00415 1.23157 0.93500 0.90456 0.96564 1.20881 1.00346 0.94646 0.84588 0.92698 0.94858 0.93887 0.86430 0.89601 0.83236 0.83757 0.78508 0.87559 0.87233 0.89173 0.89019 0.89546 0.89144 0.81111 0.81503 0.88725 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.15 9.39 -34.44 -0.32 -14.47 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.25 5.98 5.16 -5.20 -0.03 5.96 16 10 N -0.59 -11.16 2.44 -176.43 -0.43 -11.59 16 11 C 0.19 2.75 5.74 -5.19 -0.03 2.72 16 12 C -0.03 -0.41 6.85 -35.62 -0.24 -0.65 16 13 C -0.19 -2.73 10.81 -39.70 -0.43 -3.16 16 14 C -0.21 -2.58 10.91 -39.70 -0.43 -3.01 16 15 C -0.05 -0.53 12.09 29.42 0.36 -0.18 16 16 O -0.18 -2.29 9.55 5.70 0.05 -2.24 16 17 C 0.48 8.81 7.01 -10.98 -0.08 8.73 16 18 O -0.53 -11.91 11.34 5.56 0.06 -11.84 16 19 C 0.03 0.43 4.35 -4.98 -0.02 0.41 16 20 N -0.52 -7.21 4.86 -236.62 -1.15 -8.36 16 21 C 0.02 0.26 4.84 -3.57 -0.02 0.24 16 22 C 0.11 1.27 7.25 -3.82 -0.03 1.24 16 23 N -0.45 -6.41 3.14 -113.70 -0.36 -6.77 16 24 C -0.06 -0.76 11.68 -16.86 -0.20 -0.95 16 25 C -0.03 -0.50 11.88 -17.62 -0.21 -0.71 16 26 N -0.49 -8.68 11.24 -10.58 -0.12 -8.79 16 27 C 0.23 3.79 7.76 -155.23 -1.20 2.58 16 28 C 0.12 1.99 5.61 -4.59 -0.03 1.96 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 1.21 7.42 -51.92 -0.39 0.83 16 32 H 0.12 1.69 8.07 -51.93 -0.42 1.27 16 33 H 0.09 0.99 6.44 -51.93 -0.33 0.65 16 34 H 0.15 2.15 8.06 -52.49 -0.42 1.72 16 35 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.11 1.25 7.38 -51.93 -0.38 0.87 16 38 H 0.11 1.35 6.91 -51.93 -0.36 0.99 16 39 H 0.09 1.54 5.68 -51.93 -0.29 1.25 16 40 H 0.09 1.08 8.00 -51.93 -0.42 0.66 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.17 1.50 8.06 -52.48 -0.42 1.07 16 44 H 0.17 1.89 8.06 -52.48 -0.42 1.46 16 45 H 0.10 1.82 5.85 -51.93 -0.30 1.52 16 46 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -34.44 378.16 -9.77 -44.22 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.24 Total: 5.98 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -3.01 Total: 2.36 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -1.32 Total: -60.48 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.12 Total: -14.08 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.44 -9.77 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097201497.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.213 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds