Wall clock time and date at job start Tue Mar 31 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21304 * 119.99863 * 2 1 4 4 C 1.46792 * 120.00009 * 179.97438 * 2 1 3 5 5 C 1.40058 * 120.20511 * 359.97438 * 4 2 1 6 6 C 1.37740 * 119.90771 * 179.97438 * 5 4 2 7 7 Br 1.89098 * 119.82949 * 179.97438 * 6 5 4 8 8 C 1.38705 * 120.33829 * 0.02562 * 6 5 4 9 9 C 1.38199 * 120.42172 * 0.02562 * 8 6 5 10 10 F 1.35100 * 119.95534 * 179.97438 * 9 8 6 11 11 C 1.38904 * 120.08234 * 359.69508 * 9 8 6 12 12 O 1.35665 * 120.17083 * 180.30298 * 11 9 8 13 13 C 1.42899 * 117.00077 * 270.27771 * 12 11 9 14 14 C 1.52993 * 109.46842 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47001 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47126 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00157 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00019 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00129 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99867 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47159 * 89.99917 * 20 18 16 22 22 H 1.48499 * 109.47294 * 209.99894 * 20 18 16 23 23 H 1.48506 * 109.47140 * 329.99856 * 20 18 16 24 24 H 1.09002 * 109.47152 * 90.00208 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00309 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00289 * 1 2 3 27 27 H 1.07995 * 120.05089 * 359.95484 * 5 4 2 28 28 H 1.07996 * 119.79069 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.46504 * 299.99903 * 13 12 11 30 30 H 1.08995 * 109.46789 * 59.99638 * 13 12 11 31 31 H 1.09002 * 109.47210 * 299.99126 * 14 13 12 32 32 H 1.09001 * 109.47860 * 59.99650 * 14 13 12 33 33 H 1.09004 * 109.46869 * 299.99801 * 15 14 13 34 34 H 1.09001 * 109.47201 * 59.99719 * 15 14 13 35 35 H 0.96998 * 120.00278 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2410 -1.2713 0.0006 5 6 1.5450 -2.4867 0.0017 6 6 2.2399 -3.6760 0.0016 7 35 1.2981 -5.3157 0.0038 8 6 3.6270 -3.6769 0.0011 9 6 4.3276 -2.4857 0.0011 10 9 5.6786 -2.4977 0.0011 11 6 3.6446 -1.2762 -0.0048 12 8 4.3306 -0.1058 -0.0110 13 6 4.6645 0.4572 1.2593 14 6 5.4299 1.7655 1.0518 15 6 5.7880 2.3681 2.4118 16 6 6.5425 3.6565 2.2075 17 1 6.7467 4.0100 1.2076 18 6 6.9723 4.3840 3.2970 19 7 7.6303 5.5086 3.1187 20 14 6.6198 3.7722 5.0264 21 1 7.7345 2.9026 5.4806 22 1 6.4908 4.9318 5.9451 23 1 5.3538 2.9959 5.0285 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 0.4651 -2.4915 0.0028 28 1 4.1629 -4.6146 0.0015 29 1 3.7510 0.6560 1.8199 30 1 5.2867 -0.2440 1.8152 31 1 6.3433 1.5671 0.4910 32 1 4.8074 2.4667 0.4959 33 1 4.8748 2.5665 2.9731 34 1 6.4108 1.6669 2.9673 35 1 7.9329 6.0202 3.8852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097371782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:21 Heat of formation + Delta-G solvation = -97.387264 kcal Electronic energy + Delta-G solvation = -21479.194082 eV Core-core repulsion = 17824.581883 eV Total energy + Delta-G solvation = -3654.612200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 344.021 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.17696 -40.69091 -38.52034 -37.85059 -34.13486 -32.65922 -32.13912 -31.63896 -29.59281 -29.19651 -27.20460 -24.64052 -23.23891 -22.32242 -20.37638 -20.18397 -18.28330 -17.52860 -17.27270 -16.78241 -16.11084 -15.91790 -15.41731 -15.25008 -14.92752 -14.85700 -14.46589 -14.03926 -13.71028 -13.23349 -13.17848 -12.84406 -12.66167 -12.42713 -12.25907 -12.18688 -11.76959 -11.14939 -10.98946 -10.87270 -10.80742 -10.23285 -10.02891 -9.88390 -9.71493 -9.58173 -9.49127 -9.19790 -8.93558 -8.53040 -6.02939 -4.01158 -0.01238 0.39135 0.97804 1.95365 2.87292 3.30988 3.37635 3.38529 3.41393 3.59419 3.86154 4.31658 4.35401 4.45705 4.63991 4.74521 4.93231 5.06537 5.12253 5.28302 5.30185 5.35861 5.41662 5.51266 5.56426 5.79359 5.86987 5.97009 6.50119 6.52961 6.84595 7.24973 7.32684 7.39765 7.43990 7.78814 8.55435 9.02470 9.58602 11.10533 Molecular weight = 344.02amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.002679 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.661359 B =10450.596167 C =10964.436792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.383 3.617 3 O -0.411 6.411 4 C -0.164 4.164 5 C -0.044 4.044 6 C -0.093 4.093 7 Br -0.031 7.031 8 C -0.088 4.088 9 C 0.075 3.925 10 F -0.118 7.118 11 C 0.150 3.850 12 O -0.315 6.315 13 C 0.077 3.923 14 C -0.097 4.097 15 C -0.008 4.008 16 C -0.518 4.518 17 H 0.074 0.926 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.017 0.983 34 H 0.012 0.988 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.603 -25.952 -7.080 32.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.257 3.743 3 O -0.283 6.283 4 C -0.166 4.166 5 C -0.064 4.064 6 C -0.173 4.173 7 Br 0.055 6.945 8 C -0.108 4.108 9 C 0.054 3.946 10 F -0.096 7.096 11 C 0.103 3.897 12 O -0.231 6.231 13 C 0.004 3.996 14 C -0.135 4.135 15 C -0.046 4.046 16 C -0.556 4.556 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.541 5.541 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 H 0.117 0.883 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.171 0.829 28 H 0.171 0.829 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.036 0.964 34 H 0.030 0.970 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.416 -25.716 -7.120 32.421 hybrid contribution 0.348 -0.197 1.078 1.150 sum -18.068 -25.913 -6.043 32.162 Atomic orbital electron populations 1.22233 0.93089 1.05130 1.04947 1.22203 0.91678 0.87022 0.73370 1.90727 1.71564 1.33242 1.32783 1.20944 0.92801 0.96099 1.06796 1.21385 1.00860 0.89164 0.94998 1.21376 0.93830 0.92694 1.09371 1.96786 1.74502 1.25499 1.97723 1.21196 0.92882 0.98070 0.98675 1.17919 0.78179 0.93211 1.05278 1.91584 1.27201 1.97135 1.93666 1.19192 0.89701 0.86326 0.94511 1.86040 1.72591 1.32730 1.31756 1.23161 0.98746 0.96300 0.81377 1.21481 0.98932 0.92199 1.00856 1.19508 0.96529 0.96524 0.92019 1.21073 1.34836 1.04550 0.95170 0.90783 1.25016 0.94606 0.94698 0.99137 1.69909 1.38563 1.14826 1.30851 0.86784 0.79318 0.78528 0.84699 1.20240 1.21279 1.19080 0.88283 0.88851 0.89707 0.82927 0.82873 0.92871 0.93292 0.91751 0.91114 0.96433 0.96962 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.35 9.75 36.01 0.35 -1.00 16 2 C 0.38 4.52 7.22 -30.85 -0.22 4.30 16 3 O -0.41 -6.85 14.75 -16.39 -0.24 -7.09 16 4 C -0.16 -1.85 5.88 -104.96 -0.62 -2.47 16 5 C -0.04 -0.35 9.08 -39.08 -0.36 -0.71 16 6 C -0.09 -0.77 6.21 -39.59 -0.25 -1.02 16 7 Br -0.03 -0.21 33.68 -68.01 -2.29 -2.50 16 8 C -0.09 -0.82 9.74 -39.42 -0.38 -1.20 16 9 C 0.07 0.94 7.30 -39.35 -0.29 0.65 16 10 F -0.12 -1.66 17.11 2.25 0.04 -1.62 16 11 C 0.15 2.12 5.75 -38.54 -0.22 1.90 16 12 O -0.31 -5.56 8.34 -40.62 -0.34 -5.90 16 13 C 0.08 1.41 5.42 37.15 0.20 1.61 16 14 C -0.10 -2.11 5.52 -26.73 -0.15 -2.25 16 15 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 16 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 17 H 0.07 2.34 7.99 -52.49 -0.42 1.93 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 20 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.36 6.46 -51.93 -0.34 0.02 16 27 H 0.15 0.75 6.35 -52.49 -0.33 0.41 16 28 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 29 H 0.05 0.95 7.50 -51.93 -0.39 0.56 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 34 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -33.66 327.26 -8.22 -41.88 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: -3.95 Total: -5.25 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.47 Total: -14.22 kcal Atomic # 7 Polarization: -28.38 SS G_CDS: 0.77 Total: -27.61 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.58 Total: -12.99 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -2.29 Total: -2.50 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.66 -8.22 -41.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097371782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.508 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds