Wall clock time and date at job start Tue Mar 31 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46509 * 119.99736 * 2 1 4 4 C 1.50701 * 109.47148 * 270.00334 * 3 2 1 5 5 H 1.08002 * 119.99812 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00066 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00214 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99756 * 359.97438 * 6 4 3 9 9 H 1.48494 * 109.47301 * 90.00771 * 8 6 4 10 10 H 1.48501 * 109.46774 * 210.00201 * 8 6 4 11 11 H 1.48501 * 109.47245 * 330.00059 * 8 6 4 12 12 C 1.39367 * 120.00676 * 180.02562 * 2 1 3 13 13 C 1.39148 * 119.90558 * 359.97438 * 12 2 1 14 14 C 1.37676 * 120.09324 * 180.02562 * 13 12 2 15 15 C 1.39909 * 119.90481 * 359.97438 * 14 13 12 16 16 C 1.47142 * 120.08771 * 179.97438 * 15 14 13 17 17 C 1.34665 * 120.00022 * 144.41001 * 16 15 14 18 18 C 1.46846 * 120.00247 * 350.89149 * 17 16 15 19 19 C 1.39641 * 121.42826 * 317.92879 * 18 17 16 20 20 C 1.38646 * 119.45749 * 180.02562 * 19 18 17 21 21 N 1.31114 * 122.63096 * 0.02562 * 20 19 18 22 22 C 1.33679 * 122.44817 * 359.97438 * 21 20 19 23 23 C 1.40572 * 121.17999 * 179.97438 * 22 21 20 24 24 C 1.36163 * 119.71378 * 180.02562 * 23 22 21 25 25 C 1.39251 * 121.07995 * 0.02562 * 24 23 22 26 26 C 1.36385 * 120.78516 * 359.97438 * 25 24 23 27 27 C 1.39828 * 119.56509 * 359.97438 * 26 25 24 28 28 C 1.39908 * 119.82038 * 0.24295 * 15 14 13 29 29 C 1.37674 * 119.90730 * 359.49420 * 28 15 14 30 30 H 1.09000 * 109.47056 * 269.99887 * 1 2 3 31 31 H 1.08998 * 109.47540 * 30.00179 * 1 2 3 32 32 H 1.09002 * 109.46593 * 149.99727 * 1 2 3 33 33 H 1.08998 * 109.47162 * 29.99914 * 3 2 1 34 34 H 1.08995 * 109.46957 * 150.00335 * 3 2 1 35 35 H 0.97000 * 119.99979 * 179.97438 * 7 6 4 36 36 H 1.08004 * 119.95879 * 0.02562 * 13 12 2 37 37 H 1.08001 * 120.04738 * 180.02562 * 14 13 12 38 38 H 1.08004 * 120.00096 * 324.41526 * 16 15 14 39 39 H 1.08004 * 120.00572 * 170.88838 * 17 16 15 40 40 H 1.07999 * 120.26976 * 359.97438 * 19 18 17 41 41 H 1.08003 * 118.68479 * 179.97438 * 20 19 18 42 42 H 1.08003 * 120.14915 * 0.02562 * 23 22 21 43 43 H 1.08005 * 119.45940 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.60722 * 179.71544 * 25 24 23 45 45 H 1.07997 * 120.21901 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.04495 * 179.75273 * 28 15 14 47 47 H 1.08002 * 119.95812 * 180.23121 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1267 2.8776 -1.6728 7 7 3.3463 3.2571 -2.9127 8 14 3.7337 3.9288 -0.2529 9 1 5.1068 3.5071 0.1236 10 1 3.7495 5.3555 -0.6648 11 1 2.8272 3.7597 0.9111 12 6 2.1620 -1.2069 -0.0005 13 6 1.4644 -2.4109 -0.0005 14 6 2.1490 -3.6053 -0.0005 15 6 3.5481 -3.6074 -0.0011 16 6 4.2839 -4.8817 -0.0005 17 6 5.4416 -4.9910 -0.6796 18 6 5.8696 -3.9126 -1.5797 19 6 4.9653 -3.2701 -2.4279 20 6 5.4139 -2.2572 -3.2615 21 7 6.6658 -1.8688 -3.2916 22 6 7.6068 -2.4206 -2.5190 23 6 8.9417 -1.9836 -2.5734 24 6 9.8762 -2.5673 -1.7733 25 6 9.5326 -3.5944 -0.8981 26 6 8.2473 -4.0435 -0.8190 27 6 7.2633 -3.4646 -1.6264 28 6 4.2457 -2.3947 0.0035 29 6 3.5534 -1.2046 -0.0020 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3632 -0.8900 -0.5139 33 1 1.6084 2.0285 0.5138 34 1 3.1499 1.1385 0.5138 35 1 3.8231 4.0830 -3.0899 36 1 0.3844 -2.4084 -0.0005 37 1 1.6068 -4.5394 -0.0010 38 1 3.8954 -5.7294 0.5445 39 1 6.0554 -5.8719 -0.5623 40 1 3.9251 -3.5605 -2.4350 41 1 4.7039 -1.7691 -3.9127 42 1 9.2251 -1.1883 -3.2470 43 1 10.9006 -2.2280 -1.8181 44 1 10.2939 -4.0437 -0.2775 45 1 7.9911 -4.8410 -0.1373 46 1 5.3256 -2.3921 0.0072 47 1 4.0911 -0.2679 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097475352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:36 Heat of formation + Delta-G solvation = 114.718466 kcal Electronic energy + Delta-G solvation = -29221.078210 eV Core-core repulsion = 25527.252305 eV Total energy + Delta-G solvation = -3693.825905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.158 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.54498 -39.14819 -37.09737 -36.31570 -34.51554 -32.64624 -31.72929 -30.73263 -30.35241 -29.60801 -28.64508 -28.12916 -25.39582 -24.11454 -23.36922 -22.79019 -22.21838 -21.41968 -20.18809 -19.08168 -17.92036 -17.21092 -16.97732 -16.79857 -16.02088 -15.46189 -14.87743 -14.71119 -14.48599 -14.33279 -14.10896 -13.88743 -13.78515 -13.57941 -13.41367 -13.15006 -13.02335 -12.79771 -12.48080 -12.27414 -12.01381 -11.69654 -11.62376 -11.54280 -11.52221 -11.21522 -11.08908 -11.00967 -10.66377 -10.46420 -10.27870 -10.18653 -9.73270 -9.44144 -9.16690 -8.78037 -8.68253 -8.60585 -8.37755 -7.74063 -6.41192 -6.16271 -4.16907 0.36932 1.03922 1.40076 1.98755 2.12427 2.77224 3.14222 3.20622 3.27338 3.29181 3.93069 4.30579 4.31075 4.40446 4.53222 4.59777 4.79239 4.92053 4.96617 5.06420 5.14016 5.26945 5.30835 5.32607 5.37645 5.45996 5.54008 5.65105 5.74910 5.83298 5.88506 5.90528 5.99792 6.10500 6.11418 6.18242 6.24475 6.26211 6.38235 6.39834 6.42063 6.47236 6.62711 6.66556 6.73166 6.73786 6.93003 6.96140 7.00731 7.15709 7.37314 7.49418 7.92728 8.21453 8.26862 8.45690 8.89722 9.43104 10.96466 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009116 B = 0.004290 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3070.783991 B = 6525.288633 C = 8618.638247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.603 5.603 3 C 0.219 3.781 4 C -0.537 4.537 5 H 0.077 0.923 6 C 0.077 3.923 7 N -0.890 5.890 8 Si 0.868 3.132 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.254 3.746 13 C -0.225 4.225 14 C -0.051 4.051 15 C -0.169 4.169 16 C -0.046 4.046 17 C -0.159 4.159 18 C 0.017 3.983 19 C -0.153 4.153 20 C 0.151 3.849 21 N -0.484 5.484 22 C 0.130 3.870 23 C -0.092 4.092 24 C -0.110 4.110 25 C -0.128 4.128 26 C -0.092 4.092 27 C -0.105 4.105 28 C -0.041 4.041 29 C -0.190 4.190 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.027 0.973 35 H 0.266 0.734 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.139 0.861 41 H 0.158 0.842 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.110 0.890 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.850 -16.859 5.826 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.307 5.307 3 C 0.097 3.903 4 C -0.575 4.575 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.695 3.305 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.191 1.191 12 C 0.146 3.854 13 C -0.248 4.248 14 C -0.070 4.070 15 C -0.171 4.171 16 C -0.064 4.064 17 C -0.178 4.178 18 C 0.009 3.991 19 C -0.173 4.173 20 C -0.020 4.020 21 N -0.192 5.192 22 C 0.009 3.991 23 C -0.111 4.111 24 C -0.130 4.130 25 C -0.146 4.146 26 C -0.110 4.110 27 C -0.107 4.107 28 C -0.060 4.060 29 C -0.213 4.213 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.157 0.843 41 H 0.175 0.825 42 H 0.151 0.849 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.128 0.872 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.160 -15.759 5.163 17.367 hybrid contribution 0.067 0.185 1.126 1.143 sum 5.227 -15.574 6.289 17.590 Atomic orbital electron populations 1.21552 0.80777 1.02572 0.99928 1.46774 1.04671 1.04149 1.75100 1.19716 0.91897 0.80531 0.98109 1.21391 1.37379 1.07417 0.91337 0.90478 1.24858 0.95263 0.97195 0.95373 1.69882 1.40846 1.23430 1.18560 0.86973 0.80010 0.80368 0.83140 1.19904 1.20844 1.19067 1.18038 0.91360 0.85936 0.90087 1.20489 0.99202 0.91171 1.13929 1.20792 0.92731 0.96789 0.96707 1.18510 0.92993 0.92213 1.13402 1.22110 0.92943 0.95614 0.95782 1.21623 0.98252 0.98029 0.99849 1.20338 0.91030 0.93729 0.94020 1.22394 1.00542 0.97465 0.96895 1.22749 0.92037 0.92119 0.95104 1.67801 1.01809 1.27169 1.22444 1.18824 0.93885 0.93109 0.93233 1.20842 0.90733 0.99929 0.99569 1.20819 0.99513 0.96525 0.96104 1.20862 0.96388 0.97829 0.99484 1.20801 0.92510 0.99478 0.98238 1.19813 0.93466 0.98340 0.99039 1.21048 0.98570 0.91278 0.95153 1.20730 0.92491 0.98684 1.09373 0.94292 0.91042 0.92179 0.95335 0.95520 0.92434 0.86490 0.86836 0.86117 0.85725 0.84313 0.82528 0.84929 0.85734 0.85968 0.85638 0.87163 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.55 10.18 59.85 0.61 2.16 16 2 N -0.60 -12.09 2.98 -180.94 -0.54 -12.63 16 3 C 0.22 5.05 3.97 -5.19 -0.02 5.02 16 4 C -0.54 -14.65 9.94 -34.44 -0.34 -14.99 16 5 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 6 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 7 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 8 Si 0.87 20.82 27.47 -169.99 -4.67 16.15 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 12 C 0.25 4.80 6.56 -83.76 -0.55 4.25 16 13 C -0.22 -3.55 9.18 -39.45 -0.36 -3.92 16 14 C -0.05 -0.71 9.78 -39.16 -0.38 -1.10 16 15 C -0.17 -2.42 4.03 -105.03 -0.42 -2.85 16 16 C -0.05 -0.53 9.75 -37.23 -0.36 -0.89 16 17 C -0.16 -1.85 8.86 -37.37 -0.33 -2.18 16 18 C 0.02 0.24 3.62 -102.58 -0.37 -0.13 16 19 C -0.15 -2.35 6.96 -38.91 -0.27 -2.62 16 20 C 0.15 2.59 11.08 -17.71 -0.20 2.39 16 21 N -0.48 -8.88 10.27 -11.17 -0.11 -8.99 16 22 C 0.13 2.16 6.62 -84.91 -0.56 1.60 16 23 C -0.09 -1.32 9.99 -39.45 -0.39 -1.71 16 24 C -0.11 -1.27 9.94 -39.95 -0.40 -1.67 16 25 C -0.13 -1.39 9.97 -39.87 -0.40 -1.79 16 26 C -0.09 -1.11 9.48 -39.65 -0.38 -1.48 16 27 C -0.10 -1.55 5.80 -104.71 -0.61 -2.15 16 28 C -0.04 -0.70 6.84 -39.16 -0.27 -0.97 16 29 C -0.19 -3.71 9.18 -39.45 -0.36 -4.08 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 32 H 0.06 0.86 6.18 -51.93 -0.32 0.54 16 33 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 34 H 0.03 0.63 5.60 -51.93 -0.29 0.34 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.12 1.64 6.12 -52.48 -0.32 1.32 16 37 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 39 H 0.13 1.14 7.72 -52.48 -0.41 0.74 16 40 H 0.14 2.05 6.99 -52.49 -0.37 1.68 16 41 H 0.16 2.56 8.06 -52.48 -0.42 2.13 16 42 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 43 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 45 H 0.13 1.23 7.14 -52.49 -0.37 0.85 16 46 H 0.11 1.92 6.23 -52.49 -0.33 1.59 16 47 H 0.13 2.80 6.12 -52.49 -0.32 2.47 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -31.53 382.78 -11.31 -42.84 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.07 Total: 7.83 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -6.47 Total: -25.04 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.12 Total: -47.56 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.53 -11.31 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097475352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.561 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds