Wall clock time and date at job start Tue Mar 31 2020 07:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42908 * 109.47289 * 2 1 4 4 C 1.42895 * 113.99929 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.86768 * 18.75270 * 4 3 2 6 6 C 1.53848 * 113.62811 * 247.39458 * 4 3 2 7 7 C 1.53855 * 87.14552 * 270.63330 * 6 4 3 8 8 H 1.09001 * 113.71322 * 220.32363 * 7 6 4 9 9 N 1.46493 * 113.63434 * 89.36640 * 7 6 4 10 10 S 1.65595 * 119.99985 * 117.61877 * 9 7 6 11 11 O 1.42097 * 104.28332 * 308.93207 * 10 9 7 12 12 O 1.42100 * 104.27904 * 181.07224 * 10 9 7 13 13 C 1.81400 * 104.44738 * 65.00657 * 10 9 7 14 14 C 1.53002 * 109.47188 * 179.97438 * 13 10 9 15 15 C 1.50703 * 109.47207 * 179.97438 * 14 13 10 16 16 H 1.07994 * 119.99603 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99838 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00380 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99848 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47261 * 239.99776 * 19 17 15 22 22 H 1.48500 * 109.47454 * 119.99769 * 19 17 15 23 23 C 1.53387 * 113.63237 * 150.00516 * 4 3 2 24 24 C 1.52722 * 113.55473 * 203.88694 * 23 4 3 25 25 C 1.53142 * 109.23630 * 187.45888 * 24 23 4 26 26 C 1.52963 * 109.43648 * 302.17429 * 25 24 23 27 27 C 1.52976 * 109.69981 * 61.68976 * 26 25 24 28 28 C 1.52729 * 113.55660 * 334.71122 * 23 4 3 29 29 H 1.08998 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47062 * 300.00178 * 1 2 3 31 31 H 1.09010 * 109.46925 * 59.99841 * 1 2 3 32 32 H 1.09005 * 109.47000 * 240.00385 * 2 1 3 33 33 H 1.08998 * 109.47270 * 120.00344 * 2 1 3 34 34 H 1.09002 * 113.60696 * 156.07456 * 6 4 3 35 35 H 1.08997 * 113.60896 * 25.19854 * 6 4 3 36 36 H 0.97007 * 120.00131 * 297.62823 * 9 7 6 37 37 H 1.08993 * 109.47463 * 59.99760 * 13 10 9 38 38 H 1.09006 * 109.46972 * 299.99416 * 13 10 9 39 39 H 1.09005 * 109.47493 * 59.99684 * 14 13 10 40 40 H 1.08998 * 109.47006 * 299.99647 * 14 13 10 41 41 H 0.97001 * 119.99667 * 0.02562 * 18 17 15 42 42 H 1.08999 * 109.51059 * 307.38932 * 24 23 4 43 43 H 1.08999 * 109.50816 * 67.53094 * 24 23 4 44 44 H 1.09004 * 109.47502 * 182.18617 * 25 24 23 45 45 H 1.09000 * 109.48144 * 62.17175 * 25 24 23 46 46 H 1.08999 * 109.43732 * 301.61191 * 26 25 24 47 47 H 1.09010 * 109.39164 * 181.72892 * 26 25 24 48 48 H 1.08998 * 109.47835 * 178.31900 * 27 26 25 49 49 H 1.09001 * 109.49189 * 58.29103 * 27 26 25 50 50 H 1.08996 * 109.51230 * 292.45666 * 28 23 4 51 51 H 1.09004 * 109.50962 * 52.59771 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9281 0.5455 -0.3238 6 6 4.0034 2.0487 1.3005 7 6 3.8470 3.4349 0.6516 8 1 4.6790 4.1096 0.8530 9 7 2.5412 4.0530 0.8944 10 16 2.4427 5.4783 1.7318 11 8 3.1953 5.2431 2.9139 12 8 1.0500 5.7535 1.7926 13 6 3.2842 6.6855 0.6711 14 6 3.2592 8.0598 1.3431 15 6 3.9589 9.0626 0.4622 16 1 4.3796 8.7507 -0.4823 17 6 4.0627 10.3778 0.8625 18 7 3.5508 10.7574 2.0129 19 14 4.9293 11.6209 -0.2297 20 1 5.4127 10.9460 -1.4610 21 1 6.0838 12.2023 0.5013 22 1 3.9809 12.7027 -0.5976 23 6 3.9475 2.7220 -0.7031 24 6 5.3795 2.5911 -1.2177 25 6 5.8581 3.9528 -1.7296 26 6 4.9137 4.4443 -2.8279 27 6 3.5061 4.6226 -2.2560 28 6 2.9856 3.2728 -1.7538 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 5.0402 1.7687 1.4871 35 1 3.3607 1.8977 2.1678 36 1 1.7342 3.6274 0.5648 37 1 2.7740 6.7423 -0.2904 38 1 4.3176 6.3751 0.5163 39 1 3.7692 8.0033 2.3048 40 1 2.2258 8.3699 1.4975 41 1 3.1004 10.1120 2.5799 42 1 6.0284 2.2581 -0.4077 43 1 5.4092 1.8656 -2.0306 44 1 6.8658 3.8554 -2.1335 45 1 5.8636 4.6687 -0.9077 46 1 4.8867 3.7140 -3.6367 47 1 5.2722 5.3990 -3.2131 48 1 2.8430 5.0012 -3.0338 49 1 3.5370 5.3310 -1.4281 50 1 2.9195 2.5748 -2.5884 51 1 1.9988 3.4052 -1.3101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098018590.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:57 Heat of formation + Delta-G solvation = -129.117339 kcal Electronic energy + Delta-G solvation = -30974.233259 eV Core-core repulsion = 27000.250209 eV Total energy + Delta-G solvation = -3973.983049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.15042 -37.55648 -36.60160 -35.64956 -35.43166 -34.22636 -32.76594 -31.28267 -30.99946 -30.53216 -28.60863 -25.07606 -24.51931 -23.49372 -22.79561 -22.53854 -21.94166 -20.48970 -18.97978 -18.74257 -17.64470 -16.89231 -16.55439 -16.17582 -15.78922 -15.71347 -15.57547 -15.00842 -14.64176 -14.22153 -13.83147 -13.79047 -13.73359 -13.53082 -13.46625 -12.93629 -12.81102 -12.76091 -12.39106 -12.27622 -12.17558 -12.07315 -11.71876 -11.68529 -11.59737 -11.53746 -11.38216 -11.32162 -11.11619 -10.98500 -10.83549 -10.49184 -10.46335 -10.33396 -10.24054 -10.15588 -10.09252 -9.94506 -9.48545 -9.18695 -8.61608 -8.43202 -6.45016 -4.17442 0.76958 3.04536 3.36225 3.39752 3.44162 3.56526 4.15276 4.25989 4.36173 4.48568 4.57024 4.62502 4.73270 4.80924 4.83895 4.84372 4.99269 5.04964 5.09208 5.12433 5.17942 5.25879 5.28313 5.30974 5.42905 5.46942 5.51903 5.55407 5.57727 5.60541 5.64738 5.68982 5.81487 5.86956 5.87754 5.96167 6.02560 6.10319 6.12774 6.22957 6.25174 6.32018 6.41541 6.50040 7.00196 7.07278 7.09672 7.29228 7.99522 8.33767 8.75688 9.54833 10.94930 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.003710 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.465090 B = 7545.768780 C = 8707.021217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.362 6.362 4 C 0.075 3.925 5 H 0.073 0.927 6 C -0.172 4.172 7 C 0.148 3.852 8 H 0.098 0.902 9 N -1.098 6.098 10 S 2.590 3.410 11 O -0.967 6.967 12 O -0.968 6.968 13 C -0.585 4.585 14 C 0.016 3.984 15 C -0.596 4.596 16 H 0.056 0.944 17 C 0.015 3.985 18 N -0.908 5.908 19 Si 1.077 2.923 20 H -0.288 1.288 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.085 4.085 24 C -0.092 4.092 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.131 4.131 28 C -0.092 4.092 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.419 0.581 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.271 0.729 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.058 0.942 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -23.668 -9.135 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.281 6.281 4 C 0.016 3.984 5 H 0.091 0.909 6 C -0.212 4.212 7 C 0.039 3.961 8 H 0.116 0.884 9 N -0.855 5.855 10 S 2.687 3.313 11 O -0.957 6.957 12 O -0.958 6.958 13 C -0.718 4.718 14 C -0.023 4.023 15 C -0.636 4.636 16 H 0.074 0.926 17 C -0.189 4.189 18 N -0.543 5.543 19 Si 0.905 3.095 20 H -0.214 1.214 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.087 4.087 24 C -0.130 4.130 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.168 4.168 28 C -0.130 4.130 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.255 0.745 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.077 0.923 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.422 -21.756 -8.299 23.328 hybrid contribution -0.292 -2.000 -0.606 2.111 sum 1.130 -23.756 -8.905 25.396 Atomic orbital electron populations 1.21758 0.93733 1.02153 1.03404 1.22499 0.95536 0.83867 0.99816 1.87836 1.19643 1.26110 1.94478 1.23069 0.81607 0.97272 0.96420 0.90948 1.23952 1.01905 0.96916 0.98409 1.21433 0.85121 0.94533 0.94997 0.88363 1.55529 1.13244 1.40931 1.75814 1.05619 0.75128 0.74606 0.75983 1.93547 1.73771 1.83818 1.44520 1.93554 1.31058 1.84382 1.86826 1.30424 1.12672 1.14036 1.14629 1.19062 0.98302 0.88468 0.96497 1.21878 1.40295 0.94949 1.06465 0.92564 1.25946 0.96613 0.98183 0.98191 1.70717 1.34383 1.38593 1.10607 0.83425 0.76247 0.75139 0.74653 1.21430 1.21185 1.21170 1.22308 0.96256 0.95019 0.95124 1.21280 0.93032 0.98099 1.00540 1.21559 0.98727 0.96532 0.99084 1.21489 0.95292 1.01049 0.97687 1.21702 0.96274 0.97667 1.01156 1.21219 0.98604 0.96220 0.96934 0.91270 0.91650 0.91760 0.93540 0.93493 0.88424 0.89864 0.74455 0.85799 0.86263 0.95855 0.95846 0.91864 0.91356 0.91373 0.91718 0.91434 0.92369 0.91878 0.91942 0.91135 0.92292 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.47 6.50 37.16 0.24 0.71 16 3 O -0.36 -3.70 7.73 -35.23 -0.27 -3.97 16 4 C 0.07 0.69 3.81 -26.09 -0.10 0.59 16 5 H 0.07 0.55 7.82 -51.93 -0.41 0.14 16 6 C -0.17 -1.79 7.36 -25.85 -0.19 -1.98 16 7 C 0.15 1.78 3.35 -67.27 -0.23 1.56 16 8 H 0.10 1.19 6.96 -51.93 -0.36 0.82 16 9 N -1.10 -15.44 4.84 -4.33 -0.02 -15.46 16 10 S 2.59 47.99 5.40 -107.50 -0.58 47.41 16 11 O -0.97 -20.54 17.82 -57.54 -1.03 -21.57 16 12 O -0.97 -20.82 18.08 -57.54 -1.04 -21.86 16 13 C -0.58 -11.35 4.95 37.16 0.18 -11.17 16 14 C 0.02 0.40 4.29 -27.88 -0.12 0.28 16 15 C -0.60 -16.62 9.11 -34.44 -0.31 -16.94 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 18 N -0.91 -27.84 13.65 55.43 0.76 -27.08 16 19 Si 1.08 25.02 29.90 -169.99 -5.08 19.93 16 20 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.08 -0.82 0.71 -154.37 -0.11 -0.93 16 24 C -0.09 -0.75 5.03 -26.80 -0.13 -0.89 16 25 C -0.12 -1.14 5.84 -26.68 -0.16 -1.30 16 26 C -0.12 -1.18 5.86 -26.76 -0.16 -1.34 16 27 C -0.13 -1.47 5.85 -26.67 -0.16 -1.62 16 28 C -0.09 -0.95 4.43 -26.80 -0.12 -1.07 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.82 7.61 -51.93 -0.40 0.43 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.42 5.56 6.17 -34.47 -0.21 5.35 16 37 H 0.12 2.21 7.02 -51.93 -0.36 1.85 16 38 H 0.12 2.08 7.82 -51.92 -0.41 1.67 16 39 H 0.02 0.62 8.01 -51.93 -0.42 0.20 16 40 H 0.02 0.63 8.01 -51.93 -0.42 0.21 16 41 H 0.27 8.31 7.22 -40.82 -0.29 8.02 16 42 H 0.07 0.50 7.31 -51.93 -0.38 0.12 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.72 7.38 -51.93 -0.38 0.33 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.07 0.90 5.56 -51.93 -0.29 0.61 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.07 0.84 5.76 -51.93 -0.30 0.54 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -35.06 399.67 -11.21 -46.27 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.90 Total: 4.80 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: -1.07 Total: -34.50 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.74 Total: -42.54 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -2.34 Total: -47.40 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.93 kcal Atomic # 16 Polarization: 47.99 SS G_CDS: -0.58 Total: 47.41 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.06 -11.21 -46.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098018590.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.844 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds