Wall clock time and date at job start Tue Mar 31 2020 07:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42905 * 109.47068 * 2 1 4 4 C 1.42894 * 114.00045 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.92554 * 21.79613 * 4 3 2 6 6 C 1.53854 * 113.62987 * 250.49482 * 4 3 2 7 7 C 1.53845 * 87.14466 * 220.32021 * 6 4 3 8 8 H 1.09000 * 113.63533 * 139.75833 * 7 6 4 9 9 N 1.46494 * 113.63214 * 270.62907 * 7 6 4 10 10 S 1.65599 * 120.00309 * 245.49508 * 9 7 6 11 11 O 1.42106 * 104.27393 * 308.93122 * 10 9 7 12 12 O 1.42100 * 104.28186 * 181.07122 * 10 9 7 13 13 C 1.81399 * 104.44810 * 64.99866 * 10 9 7 14 14 C 1.52998 * 109.47111 * 180.02562 * 13 10 9 15 15 C 1.50706 * 109.47348 * 180.02562 * 14 13 10 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.53387 * 113.63163 * 153.10563 * 4 3 2 24 24 C 1.52727 * 113.55788 * 254.32276 * 23 4 3 25 25 C 1.53146 * 109.23525 * 187.47362 * 24 23 4 26 26 C 1.52967 * 109.43126 * 302.17167 * 25 24 23 27 27 C 1.52977 * 109.70270 * 61.68452 * 26 25 24 28 28 C 1.52715 * 113.55843 * 25.15632 * 23 4 3 29 29 H 1.08999 * 109.46806 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47210 * 300.00499 * 1 2 3 31 31 H 1.09002 * 109.47156 * 59.99907 * 1 2 3 32 32 H 1.08997 * 109.47029 * 240.00262 * 2 1 3 33 33 H 1.08997 * 109.47036 * 119.99623 * 2 1 3 34 34 H 1.08992 * 113.60638 * 105.75319 * 6 4 3 35 35 H 1.09004 * 113.60182 * 334.88021 * 6 4 3 36 36 H 0.97002 * 120.00344 * 65.49595 * 9 7 6 37 37 H 1.09000 * 109.47241 * 60.00442 * 13 10 9 38 38 H 1.09002 * 109.47106 * 299.99999 * 13 10 9 39 39 H 1.09001 * 109.47671 * 60.00243 * 14 13 10 40 40 H 1.09006 * 109.47297 * 299.99963 * 14 13 10 41 41 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 42 42 H 1.08997 * 109.51592 * 307.40415 * 24 23 4 43 43 H 1.09003 * 109.50671 * 67.54903 * 24 23 4 44 44 H 1.08998 * 109.47705 * 182.18269 * 25 24 23 45 45 H 1.08996 * 109.48081 * 62.15840 * 25 24 23 46 46 H 1.09004 * 109.43315 * 301.61828 * 26 25 24 47 47 H 1.08999 * 109.39161 * 181.73357 * 26 25 24 48 48 H 1.09008 * 109.47830 * 178.32031 * 27 26 25 49 49 H 1.08996 * 109.47630 * 58.30134 * 27 26 25 50 50 H 1.08999 * 109.51000 * 292.45256 * 28 23 4 51 51 H 1.08999 * 109.51115 * 52.54153 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9276 0.5645 -0.3737 6 6 4.0090 1.9779 1.3279 7 6 4.9882 2.8149 0.4868 8 1 5.1551 3.8178 0.8799 9 7 6.2344 2.1145 0.1665 10 16 7.6724 2.6605 0.7800 11 8 7.6904 4.0433 0.4530 12 8 8.6420 1.7689 0.2470 13 6 7.5153 2.4324 2.5727 14 6 8.7966 2.9067 3.2614 15 6 8.6664 2.7167 4.7507 16 1 7.7602 2.2997 5.1647 17 6 9.7041 3.0751 5.5848 18 7 10.8074 3.5833 5.0807 19 14 9.5423 2.8402 7.4309 20 1 10.7865 3.2993 8.0991 21 1 8.3899 3.6317 7.9315 22 1 9.3224 1.4022 7.7295 23 6 3.9446 2.7582 -0.6363 24 6 4.5529 2.5596 -2.0230 25 6 5.1973 3.8703 -2.4837 26 6 4.1447 4.9802 -2.4902 27 6 3.6076 5.1900 -1.0733 28 6 2.9349 3.9029 -0.5877 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.4952 1.2049 1.9230 35 1 3.3060 2.5783 1.9053 36 1 6.2173 1.3310 -0.4050 37 1 7.3540 1.3770 2.7920 38 1 6.6694 3.0134 2.9402 39 1 8.9576 3.9623 3.0422 40 1 9.6429 2.3262 2.8940 41 1 10.8912 3.7057 4.1221 42 1 5.3103 1.7770 -1.9798 43 1 3.7708 2.2719 -2.7257 44 1 5.5988 3.7442 -3.4891 45 1 6.0038 4.1383 -1.8012 46 1 3.3247 4.6984 -3.1508 47 1 4.5967 5.9055 -2.8475 48 1 2.8799 6.0015 -1.0769 49 1 4.4315 5.4435 -0.4062 50 1 2.0880 3.6689 -1.2328 51 1 2.5861 4.0374 0.4362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098018592.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:09 Heat of formation + Delta-G solvation = -131.754198 kcal Electronic energy + Delta-G solvation = -30297.808985 eV Core-core repulsion = 26323.711593 eV Total energy + Delta-G solvation = -3974.097392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.15238 -37.57524 -36.69384 -35.85809 -35.55898 -34.27077 -32.82813 -31.09800 -31.00773 -30.77671 -28.66910 -25.09211 -24.57828 -23.32904 -23.13442 -22.41635 -21.97234 -20.53763 -19.16613 -18.75604 -17.70745 -16.97172 -16.60813 -16.22854 -15.89801 -15.79232 -15.64586 -15.06364 -14.67348 -14.21919 -13.87469 -13.79393 -13.71255 -13.49447 -13.39897 -13.12372 -12.86132 -12.68529 -12.53245 -12.39301 -12.21427 -12.12173 -11.86213 -11.73173 -11.66674 -11.57334 -11.55306 -11.10940 -11.07062 -11.04840 -10.95112 -10.55149 -10.52336 -10.51243 -10.34823 -10.25523 -10.08480 -10.04959 -9.43653 -9.34678 -8.67276 -8.47234 -6.48687 -4.21602 0.66036 2.97742 3.37997 3.39755 3.44088 3.58962 4.07776 4.15508 4.25278 4.46025 4.47555 4.55037 4.65006 4.76070 4.79381 4.85333 4.98264 5.01504 5.07413 5.08468 5.14858 5.22066 5.26310 5.28141 5.42877 5.44144 5.47874 5.53686 5.55503 5.59797 5.61469 5.63218 5.75179 5.80592 5.84405 5.91875 5.95041 6.05453 6.15885 6.16586 6.19165 6.31357 6.33001 6.42552 6.94206 6.95986 7.04899 7.08053 7.94926 8.28492 8.71481 9.50780 10.91174 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003219 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.391556 B = 8696.841765 C = 9924.085322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.072 3.928 5 H 0.086 0.914 6 C -0.175 4.175 7 C 0.135 3.865 8 H 0.112 0.888 9 N -1.106 6.106 10 S 2.590 3.410 11 O -0.962 6.962 12 O -0.967 6.967 13 C -0.582 4.582 14 C 0.015 3.985 15 C -0.600 4.600 16 H 0.055 0.945 17 C 0.016 3.984 18 N -0.905 5.905 19 Si 1.073 2.927 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.287 1.287 23 C -0.071 4.071 24 C -0.101 4.101 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.125 4.125 28 C -0.083 4.083 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.411 0.589 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.270 0.730 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.071 0.929 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.750 -4.411 -13.976 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.287 6.287 4 C 0.014 3.986 5 H 0.103 0.897 6 C -0.215 4.215 7 C 0.026 3.974 8 H 0.130 0.870 9 N -0.861 5.861 10 S 2.688 3.312 11 O -0.952 6.952 12 O -0.958 6.958 13 C -0.716 4.716 14 C -0.024 4.024 15 C -0.639 4.639 16 H 0.073 0.927 17 C -0.189 4.189 18 N -0.540 5.540 19 Si 0.900 3.100 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.073 4.073 24 C -0.139 4.139 25 C -0.162 4.162 26 C -0.153 4.153 27 C -0.163 4.163 28 C -0.120 4.120 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.246 0.754 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.339 -3.537 -12.993 23.565 hybrid contribution -1.082 -1.191 -1.167 1.988 sum -20.421 -4.728 -14.160 25.296 Atomic orbital electron populations 1.21735 0.93910 1.02093 1.03049 1.22489 0.95480 0.84298 0.99922 1.87943 1.20442 1.25787 1.94553 1.23736 0.81057 0.97381 0.96414 0.89652 1.24099 0.98899 1.01006 0.97489 1.21475 0.83432 0.96142 0.96323 0.86981 1.55643 1.22377 1.42970 1.65117 1.05657 0.72478 0.74409 0.78702 1.93553 1.85346 1.33351 1.82924 1.93560 1.57924 1.66233 1.78051 1.30351 1.10020 1.10500 1.20681 1.19067 0.88745 0.96440 0.98141 1.21835 1.04492 1.47409 0.90201 0.92667 1.25970 0.92463 0.93545 1.06894 1.70786 1.27020 1.40692 1.15537 0.83489 0.76117 0.76416 0.73968 1.20538 1.21252 1.21300 1.22211 0.94990 0.95225 0.94850 1.21408 0.99439 0.98050 0.94966 1.21570 0.98696 0.94588 1.01353 1.21472 0.98366 0.98567 0.96932 1.21621 1.00461 0.97218 0.96984 1.21102 0.96553 0.92375 1.02016 0.91328 0.91838 0.91981 0.93626 0.93421 0.90214 0.88034 0.75430 0.86027 0.86068 0.95752 0.95855 0.91932 0.91866 0.91835 0.92236 0.90724 0.92389 0.92194 0.91941 0.91366 0.91007 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.05 0.43 6.51 37.16 0.24 0.67 16 3 O -0.37 -3.60 9.49 -35.23 -0.33 -3.94 16 4 C 0.07 0.68 3.59 -26.09 -0.09 0.58 16 5 H 0.09 0.73 7.85 -51.93 -0.41 0.32 16 6 C -0.18 -1.76 7.36 -25.85 -0.19 -1.95 16 7 C 0.14 1.52 3.44 -67.28 -0.23 1.29 16 8 H 0.11 1.35 6.97 -51.93 -0.36 0.99 16 9 N -1.11 -13.66 4.96 -4.33 -0.02 -13.68 16 10 S 2.59 44.78 5.44 -107.50 -0.58 44.19 16 11 O -0.96 -19.09 17.56 -57.54 -1.01 -20.10 16 12 O -0.97 -19.58 18.08 -57.54 -1.04 -20.62 16 13 C -0.58 -11.01 6.01 37.16 0.22 -10.79 16 14 C 0.02 0.38 4.29 -27.88 -0.12 0.26 16 15 C -0.60 -16.72 9.11 -34.44 -0.31 -17.04 16 16 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 17 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 18 N -0.91 -27.63 13.65 55.43 0.76 -26.88 16 19 Si 1.07 24.75 29.90 -169.99 -5.08 19.67 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 23 C -0.07 -0.70 0.71 -154.38 -0.11 -0.81 16 24 C -0.10 -0.98 4.82 -26.80 -0.13 -1.11 16 25 C -0.12 -1.34 5.85 -26.67 -0.16 -1.50 16 26 C -0.12 -1.12 5.86 -26.76 -0.16 -1.28 16 27 C -0.13 -1.23 5.84 -26.67 -0.16 -1.38 16 28 C -0.08 -0.79 4.36 -26.81 -0.12 -0.91 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.99 7.61 -51.93 -0.40 0.59 16 36 H 0.41 4.26 7.28 -34.46 -0.25 4.00 16 37 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 38 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 39 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 40 H 0.02 0.61 8.01 -51.93 -0.42 0.20 16 41 H 0.27 8.23 7.22 -40.82 -0.29 7.94 16 42 H 0.06 0.59 6.29 -51.93 -0.33 0.27 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.98 7.97 -51.93 -0.41 0.57 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 49 H 0.07 0.76 7.38 -51.93 -0.38 0.38 16 50 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 51 H 0.07 0.66 7.31 -51.93 -0.38 0.28 16 LS Contribution 407.45 15.07 6.14 6.14 Total: -1.00 -34.63 407.45 -11.36 -46.00 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -9.16 Total: 3.41 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: -1.02 Total: -34.19 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.74 Total: -40.56 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -2.38 Total: -44.66 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.67 kcal Atomic # 16 Polarization: 44.78 SS G_CDS: -0.58 Total: 44.19 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.63 -11.36 -46.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098018592.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.757 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds