Wall clock time and date at job start Tue Mar 31 2020 07:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47225 * 2 1 4 4 C 1.42902 * 113.99901 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.86671 * 341.25651 * 4 3 2 6 6 C 1.53852 * 113.62594 * 112.61334 * 4 3 2 7 7 C 1.53843 * 87.14269 * 139.67721 * 6 4 3 8 8 H 1.09008 * 113.70876 * 89.38432 * 7 6 4 9 9 N 1.46506 * 113.63487 * 220.32802 * 7 6 4 10 10 S 1.65600 * 119.99909 * 238.82371 * 9 7 6 11 11 O 1.42095 * 104.27932 * 308.92971 * 10 9 7 12 12 O 1.42105 * 104.27336 * 181.06797 * 10 9 7 13 13 C 1.81400 * 104.44848 * 65.00054 * 10 9 7 14 14 C 1.53000 * 109.46986 * 179.97438 * 13 10 9 15 15 C 1.50698 * 109.47458 * 179.97438 * 14 13 10 16 16 H 1.08005 * 119.99679 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00483 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99592 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00044 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47345 * 59.99641 * 19 17 15 21 21 H 1.48497 * 109.47103 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47149 * 299.99902 * 19 17 15 23 23 C 1.53383 * 113.63283 * 209.99947 * 4 3 2 24 24 C 1.52725 * 113.55587 * 334.85637 * 23 4 3 25 25 C 1.53148 * 109.23704 * 187.46108 * 24 23 4 26 26 C 1.52969 * 109.43378 * 302.17175 * 25 24 23 27 27 C 1.52974 * 109.70075 * 61.68532 * 26 25 24 28 28 C 1.52731 * 113.55492 * 105.67660 * 23 4 3 29 29 H 1.08992 * 109.47185 * 59.99369 * 1 2 3 30 30 H 1.08993 * 109.47027 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46807 * 299.99395 * 1 2 3 32 32 H 1.09008 * 109.46807 * 240.00605 * 2 1 3 33 33 H 1.09001 * 109.47392 * 120.00713 * 2 1 3 34 34 H 1.09005 * 113.60525 * 25.11575 * 6 4 3 35 35 H 1.09003 * 113.60556 * 254.24712 * 6 4 3 36 36 H 0.96997 * 119.99709 * 58.81911 * 9 7 6 37 37 H 1.09000 * 109.47228 * 299.99385 * 13 10 9 38 38 H 1.09000 * 109.47520 * 60.00066 * 13 10 9 39 39 H 1.09004 * 109.47361 * 299.99424 * 14 13 10 40 40 H 1.08998 * 109.47531 * 59.99984 * 14 13 10 41 41 H 0.97001 * 119.99378 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.50657 * 307.38447 * 24 23 4 43 43 H 1.08993 * 109.51362 * 67.52712 * 24 23 4 44 44 H 1.08996 * 109.47525 * 182.18454 * 25 24 23 45 45 H 1.08996 * 109.48372 * 62.16536 * 25 24 23 46 46 H 1.09005 * 109.43441 * 301.61926 * 26 25 24 47 47 H 1.09000 * 109.39382 * 181.73008 * 26 25 24 48 48 H 1.08997 * 109.48124 * 178.31840 * 27 26 25 49 49 H 1.08999 * 109.48573 * 58.29842 * 27 26 25 50 50 H 1.08998 * 109.51107 * 292.45988 * 28 23 4 51 51 H 1.08997 * 109.50846 * 52.60157 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9281 0.5454 0.3237 6 6 4.0034 2.0488 -1.3005 7 6 4.9862 2.8393 -0.4196 8 1 5.9151 2.3074 -0.2132 9 7 5.2068 4.2145 -0.8741 10 16 6.7336 4.7223 -1.2657 11 8 7.5239 4.3548 -0.1434 12 8 6.5669 6.0858 -1.6295 13 6 7.1838 3.7275 -2.7143 14 6 8.5913 4.1089 -3.1774 15 6 8.9656 3.2821 -4.3805 16 1 8.2690 2.5574 -4.7755 17 6 10.1968 3.4515 -4.9775 18 7 11.0443 4.3351 -4.4973 19 14 10.6604 2.4271 -6.4692 20 1 9.6918 2.6826 -7.5655 21 1 12.0265 2.7972 -6.9186 22 1 10.6315 0.9867 -6.1089 23 6 3.9476 2.7218 0.7032 24 6 2.9376 3.8674 0.7211 25 6 3.6125 5.1265 1.2729 26 6 4.1557 4.8403 2.6740 27 6 5.2083 3.7326 2.6026 28 6 4.5617 2.4487 2.0746 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.2980 2.6795 -1.8416 35 1 4.4869 1.3091 -1.9386 36 1 4.4585 4.8276 -0.9456 37 1 7.1619 2.6703 -2.4501 38 1 6.4734 3.9157 -3.5193 39 1 8.6128 5.1662 -3.4419 40 1 9.3020 3.9211 -2.3727 41 1 11.9107 4.4539 -4.9171 42 1 2.5853 4.0578 -0.2927 43 1 2.0935 3.5986 1.3561 44 1 2.8847 5.9363 1.3237 45 1 4.4334 5.4162 0.6170 46 1 3.3387 4.5228 3.3219 47 1 4.6087 5.7454 3.0784 48 1 5.6143 3.5522 3.5979 49 1 6.0119 4.0372 1.9321 50 1 3.7828 2.1232 2.7641 51 1 5.3189 1.6696 1.9857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098018593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:14 Heat of formation + Delta-G solvation = -122.613936 kcal Electronic energy + Delta-G solvation = -30375.201325 eV Core-core repulsion = 26401.500284 eV Total energy + Delta-G solvation = -3973.701041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.11337 -37.60176 -36.55875 -35.54112 -35.41983 -33.89374 -33.07476 -31.21691 -31.13975 -30.65568 -28.63947 -25.59772 -24.13762 -23.35184 -23.10130 -22.39630 -21.68835 -20.41585 -19.22637 -18.78163 -17.50464 -16.98095 -16.45198 -16.11072 -15.87147 -15.44392 -15.39026 -14.69249 -14.57971 -14.57365 -14.25430 -13.93092 -13.67604 -13.43355 -13.22257 -12.94328 -12.80479 -12.53244 -12.45558 -12.15046 -12.01455 -11.88492 -11.77103 -11.67876 -11.59480 -11.51321 -11.49127 -11.07462 -11.05337 -10.98431 -10.96468 -10.88339 -10.57409 -10.43382 -10.37854 -10.22375 -10.09689 -9.75625 -9.40280 -9.32940 -8.88116 -8.50608 -6.12847 -4.18503 0.80546 3.09055 3.26447 3.31416 3.33093 3.53434 4.18379 4.23456 4.31994 4.38110 4.49756 4.59812 4.74007 4.79287 4.84386 4.87416 5.00384 5.03467 5.09511 5.13669 5.22221 5.24982 5.26831 5.32314 5.47063 5.50807 5.52790 5.59645 5.62288 5.65602 5.68365 5.74643 5.78575 5.83060 5.89751 5.94641 6.02303 6.17119 6.21183 6.23614 6.26333 6.38836 6.48900 6.52127 7.05713 7.11727 7.29641 7.36000 7.79909 8.17220 8.84698 9.46200 10.98199 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.003237 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.919956 B = 8646.883965 C =10172.018956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.367 6.367 4 C 0.071 3.929 5 H 0.090 0.910 6 C -0.171 4.171 7 C 0.139 3.861 8 H 0.119 0.881 9 N -1.109 6.109 10 S 2.586 3.414 11 O -0.963 6.963 12 O -0.968 6.968 13 C -0.590 4.590 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.075 4.075 24 C -0.081 4.081 25 C -0.135 4.135 26 C -0.115 4.115 27 C -0.127 4.127 28 C -0.102 4.102 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.416 0.584 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.266 0.734 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.288 -7.138 12.568 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.286 6.286 4 C 0.012 3.988 5 H 0.108 0.892 6 C -0.211 4.211 7 C 0.031 3.969 8 H 0.137 0.863 9 N -0.866 5.866 10 S 2.684 3.316 11 O -0.953 6.953 12 O -0.959 6.959 13 C -0.723 4.723 14 C -0.010 4.010 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.077 4.077 24 C -0.118 4.118 25 C -0.173 4.173 26 C -0.153 4.153 27 C -0.164 4.164 28 C -0.140 4.140 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.253 0.747 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.099 0.901 50 H 0.081 0.919 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.600 -6.313 13.053 24.380 hybrid contribution -0.013 -1.092 -1.374 1.755 sum -19.613 -7.405 11.679 23.998 Atomic orbital electron populations 1.21735 0.93966 1.02076 1.03041 1.22501 0.95444 0.84284 0.99956 1.87948 1.20280 1.25795 1.94541 1.23532 0.81283 0.97453 0.96515 0.89210 1.24066 0.99132 1.00341 0.97535 1.21974 0.98130 0.82238 0.94582 0.86337 1.55956 1.28261 1.19835 1.82551 1.05731 0.72963 0.75503 0.77419 1.93541 1.68442 1.84591 1.48741 1.93557 1.84625 1.32275 1.85397 1.30469 1.10895 1.13658 1.17280 1.18949 0.85597 0.98310 0.98190 1.20967 1.00959 1.21612 1.12508 0.92110 1.25067 0.96350 0.95445 0.97606 1.69945 1.08164 1.33864 1.40877 0.86534 0.77683 0.80447 0.82624 1.20071 1.21068 1.20084 1.22283 0.95469 0.95128 0.94821 1.21024 0.96579 0.92801 1.01437 1.21874 1.00706 0.97317 0.97409 1.21457 0.98399 0.98611 0.96804 1.21601 0.98762 0.94719 1.01358 1.21475 0.99438 0.98010 0.95056 0.91888 0.91329 0.91973 0.93407 0.93525 0.88380 0.90336 0.74740 0.86395 0.86123 0.94924 0.94873 0.92465 0.91593 0.91233 0.92129 0.90739 0.92496 0.92297 0.92253 0.90138 0.91918 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.41 6.50 37.16 0.24 0.66 16 3 O -0.37 -3.54 9.49 -35.23 -0.33 -3.87 16 4 C 0.07 0.65 3.76 -26.09 -0.10 0.55 16 5 H 0.09 0.71 7.82 -51.93 -0.41 0.31 16 6 C -0.17 -1.66 7.36 -25.85 -0.19 -1.85 16 7 C 0.14 1.55 3.48 -67.28 -0.23 1.32 16 8 H 0.12 1.33 7.71 -51.92 -0.40 0.93 16 9 N -1.11 -14.11 4.03 -4.33 -0.02 -14.13 16 10 S 2.59 45.29 5.41 -107.50 -0.58 44.70 16 11 O -0.96 -19.11 17.06 -57.54 -0.98 -20.09 16 12 O -0.97 -19.98 18.08 -57.54 -1.04 -21.02 16 13 C -0.59 -11.10 6.01 37.16 0.22 -10.88 16 14 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 15 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 19 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 23 C -0.07 -0.74 0.74 -154.38 -0.11 -0.86 16 24 C -0.08 -0.80 3.83 -26.80 -0.10 -0.90 16 25 C -0.14 -1.42 5.52 -26.67 -0.15 -1.57 16 26 C -0.12 -1.20 5.86 -26.76 -0.16 -1.36 16 27 C -0.13 -1.43 5.85 -26.67 -0.16 -1.59 16 28 C -0.10 -1.01 5.09 -26.80 -0.14 -1.15 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.96 7.61 -51.93 -0.40 0.57 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.42 4.71 5.89 -34.47 -0.20 4.51 16 37 H 0.12 1.96 8.14 -51.92 -0.42 1.53 16 38 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 0.65 6.85 -51.93 -0.36 0.29 16 43 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.89 5.08 -51.93 -0.26 0.63 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.08 1.12 7.41 -51.93 -0.38 0.73 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -33.86 404.77 -11.31 -45.17 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -9.13 Total: 3.51 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: -1.04 Total: -30.75 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.72 Total: -39.85 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -2.36 Total: -44.99 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 45.29 SS G_CDS: -0.58 Total: 44.70 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.86 -11.31 -45.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098018593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.443 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds