Wall clock time and date at job start Tue Mar 31 2020 07:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47225 * 2 1 4 4 C 1.42902 * 113.99901 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.86671 * 341.25651 * 4 3 2 6 6 C 1.53852 * 113.62594 * 112.61334 * 4 3 2 7 7 C 1.53843 * 87.14269 * 139.67721 * 6 4 3 8 8 H 1.09008 * 113.70876 * 89.38432 * 7 6 4 9 9 N 1.46506 * 113.63487 * 220.32802 * 7 6 4 10 10 S 1.65600 * 119.99909 * 238.82371 * 9 7 6 11 11 O 1.42095 * 104.27932 * 308.92971 * 10 9 7 12 12 O 1.42105 * 104.27336 * 181.06797 * 10 9 7 13 13 C 1.81400 * 104.44848 * 65.00054 * 10 9 7 14 14 C 1.53000 * 109.46986 * 179.97438 * 13 10 9 15 15 C 1.50698 * 109.47458 * 179.97438 * 14 13 10 16 16 H 1.08005 * 119.99679 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00483 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99592 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00044 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47345 * 59.99641 * 19 17 15 21 21 H 1.48497 * 109.47103 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47149 * 299.99902 * 19 17 15 23 23 C 1.53383 * 113.63283 * 209.99947 * 4 3 2 24 24 C 1.52725 * 113.55587 * 334.85637 * 23 4 3 25 25 C 1.53148 * 109.23704 * 187.46108 * 24 23 4 26 26 C 1.52969 * 109.43378 * 302.17175 * 25 24 23 27 27 C 1.52974 * 109.70075 * 61.68532 * 26 25 24 28 28 C 1.52731 * 113.55492 * 105.67660 * 23 4 3 29 29 H 1.08992 * 109.47185 * 59.99369 * 1 2 3 30 30 H 1.08993 * 109.47027 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46807 * 299.99395 * 1 2 3 32 32 H 1.09008 * 109.46807 * 240.00605 * 2 1 3 33 33 H 1.09001 * 109.47392 * 120.00713 * 2 1 3 34 34 H 1.09005 * 113.60525 * 25.11575 * 6 4 3 35 35 H 1.09003 * 113.60556 * 254.24712 * 6 4 3 36 36 H 0.96997 * 119.99709 * 58.81911 * 9 7 6 37 37 H 1.09000 * 109.47228 * 299.99385 * 13 10 9 38 38 H 1.09000 * 109.47520 * 60.00066 * 13 10 9 39 39 H 1.09004 * 109.47361 * 299.99424 * 14 13 10 40 40 H 1.08998 * 109.47531 * 59.99984 * 14 13 10 41 41 H 0.97001 * 119.99378 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.50657 * 307.38447 * 24 23 4 43 43 H 1.08993 * 109.51362 * 67.52712 * 24 23 4 44 44 H 1.08996 * 109.47525 * 182.18454 * 25 24 23 45 45 H 1.08996 * 109.48372 * 62.16536 * 25 24 23 46 46 H 1.09005 * 109.43441 * 301.61926 * 26 25 24 47 47 H 1.09000 * 109.39382 * 181.73008 * 26 25 24 48 48 H 1.08997 * 109.48124 * 178.31840 * 27 26 25 49 49 H 1.08999 * 109.48573 * 58.29842 * 27 26 25 50 50 H 1.08998 * 109.51107 * 292.45988 * 28 23 4 51 51 H 1.08997 * 109.50846 * 52.60157 * 28 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9281 0.5454 0.3237 6 6 4.0034 2.0488 -1.3005 7 6 4.9862 2.8393 -0.4196 8 1 5.9151 2.3074 -0.2132 9 7 5.2068 4.2145 -0.8741 10 16 6.7336 4.7223 -1.2657 11 8 7.5239 4.3548 -0.1434 12 8 6.5669 6.0858 -1.6295 13 6 7.1838 3.7275 -2.7143 14 6 8.5913 4.1089 -3.1774 15 6 8.9656 3.2821 -4.3805 16 1 8.2690 2.5574 -4.7755 17 6 10.1968 3.4515 -4.9775 18 7 11.0443 4.3351 -4.4973 19 14 10.6604 2.4271 -6.4692 20 1 9.6918 2.6826 -7.5655 21 1 12.0265 2.7972 -6.9186 22 1 10.6315 0.9867 -6.1089 23 6 3.9476 2.7218 0.7032 24 6 2.9376 3.8674 0.7211 25 6 3.6125 5.1265 1.2729 26 6 4.1557 4.8403 2.6740 27 6 5.2083 3.7326 2.6026 28 6 4.5617 2.4487 2.0746 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.2980 2.6795 -1.8416 35 1 4.4869 1.3091 -1.9386 36 1 4.4585 4.8276 -0.9456 37 1 7.1619 2.6703 -2.4501 38 1 6.4734 3.9157 -3.5193 39 1 8.6128 5.1662 -3.4419 40 1 9.3020 3.9211 -2.3727 41 1 11.9107 4.4539 -4.9171 42 1 2.5853 4.0578 -0.2927 43 1 2.0935 3.5986 1.3561 44 1 2.8847 5.9363 1.3237 45 1 4.4334 5.4162 0.6170 46 1 3.3387 4.5228 3.3219 47 1 4.6087 5.7454 3.0784 48 1 5.6143 3.5522 3.5979 49 1 6.0119 4.0372 1.9321 50 1 3.7828 2.1232 2.7641 51 1 5.3189 1.6696 1.9857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098018593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:13 Heat of formation + Delta-G solvation = -144.863781 kcal Electronic energy + Delta-G solvation = -30376.166150 eV Core-core repulsion = 26401.500284 eV Total energy + Delta-G solvation = -3974.665866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.91934 -38.30283 -38.10871 -36.98018 -36.39100 -35.88830 -34.04799 -33.12168 -31.86968 -31.39569 -29.43829 -27.58241 -24.96416 -24.13232 -23.77786 -23.58487 -23.11349 -21.25900 -20.41083 -19.87462 -19.08802 -18.20514 -17.75083 -17.02855 -16.94040 -16.69190 -16.52429 -16.45665 -15.72108 -15.47807 -15.13244 -15.09009 -14.72993 -14.47378 -14.37726 -14.12192 -13.72917 -13.64541 -13.40112 -13.20875 -13.19274 -13.12596 -13.05669 -12.94155 -12.90155 -12.81238 -12.72425 -12.40606 -12.22932 -12.19050 -12.14258 -11.86520 -11.75733 -11.72659 -11.68892 -11.44737 -11.15421 -10.97284 -10.89276 -10.63841 -10.10183 -9.98855 -8.25766 -6.39980 -0.65950 1.40863 1.44360 1.52528 1.84729 2.38199 2.80094 2.86628 3.07594 3.28659 3.40583 3.52541 3.73982 3.82680 3.97668 4.03095 4.11572 4.17616 4.19730 4.27606 4.32986 4.39807 4.47131 4.49913 4.56302 4.59986 4.69765 4.72766 4.76121 4.80810 4.87074 4.94354 5.02073 5.10538 5.12704 5.14687 5.21540 5.27290 5.27579 5.30760 5.35382 5.37560 5.41106 5.43312 5.57067 5.65613 5.68415 6.06130 6.09924 6.44163 6.73672 7.30270 8.86395 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.003237 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.919956 B = 8646.883965 C =10172.018956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.380 6.380 4 C 0.078 3.922 5 H 0.106 0.894 6 C -0.167 4.167 7 C 0.123 3.877 8 H 0.118 0.882 9 N -1.089 6.089 10 S 2.612 3.388 11 O -0.988 6.988 12 O -1.003 7.003 13 C -0.588 4.588 14 C 0.021 3.979 15 C -0.539 4.539 16 H 0.077 0.923 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.974 3.026 20 H -0.263 1.263 21 H -0.285 1.285 22 H -0.261 1.261 23 C -0.073 4.073 24 C -0.076 4.076 25 C -0.138 4.138 26 C -0.115 4.115 27 C -0.130 4.130 28 C -0.100 4.100 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.425 0.575 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.003 0.997 40 H 0.007 0.993 41 H 0.267 0.733 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.053 0.947 48 H 0.064 0.936 49 H 0.050 0.950 50 H 0.076 0.924 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.445 -9.498 12.302 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.299 6.299 4 C 0.020 3.980 5 H 0.124 0.876 6 C -0.206 4.206 7 C 0.015 3.985 8 H 0.136 0.864 9 N -0.850 5.850 10 S 2.709 3.291 11 O -0.978 6.978 12 O -0.993 6.993 13 C -0.720 4.720 14 C -0.018 4.018 15 C -0.578 4.578 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.797 3.203 20 H -0.188 1.188 21 H -0.210 1.210 22 H -0.186 1.186 23 C -0.076 4.076 24 C -0.114 4.114 25 C -0.176 4.176 26 C -0.153 4.153 27 C -0.168 4.168 28 C -0.138 4.138 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.264 0.736 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.021 0.979 40 H 0.025 0.975 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.094 0.906 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.774 -8.681 12.781 26.699 hybrid contribution 0.588 -0.348 -1.199 1.380 sum -21.187 -9.029 11.582 25.779 Atomic orbital electron populations 1.21743 0.93354 1.03015 1.02526 1.22674 0.95996 0.83448 1.00675 1.87932 1.20238 1.27172 1.94546 1.23468 0.81491 0.97481 0.95593 0.87630 1.24052 0.98528 1.00200 0.97857 1.22306 0.98933 0.81031 0.96203 0.86395 1.55478 1.26503 1.21107 1.81937 1.04686 0.73655 0.74342 0.76437 1.93508 1.70126 1.84740 1.49421 1.93502 1.85515 1.34528 1.85739 1.30372 1.07277 1.15571 1.18810 1.18803 0.89102 0.96567 0.97279 1.21498 1.01448 1.21866 1.13023 0.90515 1.26127 0.96404 0.96675 1.01046 1.70101 1.08723 1.35869 1.42765 0.85371 0.77341 0.79046 0.78547 1.18809 1.21048 1.18593 1.22285 0.94955 0.95848 0.94466 1.20985 0.96519 0.92316 1.01548 1.21895 1.00401 0.98177 0.97143 1.21467 0.98593 0.98185 0.97047 1.21602 0.98286 0.95851 1.01018 1.21480 0.99843 0.97278 0.95189 0.92546 0.89711 0.92315 0.92918 0.92546 0.88350 0.89337 0.73571 0.83847 0.84124 0.97889 0.97487 0.92400 0.91427 0.90773 0.91108 0.92530 0.90961 0.92856 0.91700 0.93163 0.90574 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.28 71.98 0.74 -0.84 16 2 C 0.05 0.60 6.50 71.98 0.47 1.06 16 3 O -0.38 -6.27 9.49 -148.98 -1.41 -7.69 16 4 C 0.08 1.22 3.76 31.01 0.12 1.33 16 5 H 0.11 1.32 7.82 -2.39 -0.02 1.30 16 6 C -0.17 -2.81 7.36 31.17 0.23 -2.58 16 7 C 0.12 2.54 3.48 45.41 0.16 2.70 16 8 H 0.12 2.48 7.71 -2.38 -0.02 2.46 16 9 N -1.09 -26.95 4.03 -167.62 -0.68 -27.63 16 10 S 2.61 92.88 5.41 -56.49 -0.31 92.58 16 11 O -0.99 -40.28 17.06 -127.65 -2.18 -42.45 16 12 O -1.00 -42.52 18.08 -127.65 -2.31 -44.83 16 13 C -0.59 -22.01 6.01 71.98 0.43 -21.57 16 14 C 0.02 1.12 4.98 29.85 0.15 1.27 16 15 C -0.54 -29.80 9.11 25.60 0.23 -29.56 16 16 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 17 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 18 N -0.94 -57.08 13.29 21.45 0.28 -56.79 16 19 Si 0.97 43.06 29.54 68.60 2.03 45.08 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 23 C -0.07 -1.31 0.74 -52.10 -0.04 -1.35 16 24 C -0.08 -1.36 3.83 30.55 0.12 -1.24 16 25 C -0.14 -2.77 5.52 30.63 0.17 -2.60 16 26 C -0.12 -2.29 5.86 30.58 0.18 -2.12 16 27 C -0.13 -2.84 5.85 30.63 0.18 -2.66 16 28 C -0.10 -1.79 5.09 30.55 0.16 -1.64 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 1.68 7.61 -2.38 -0.02 1.66 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.42 9.30 5.89 -96.75 -0.57 8.73 16 37 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 38 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 39 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.07 1.19 6.85 -2.39 -0.02 1.17 16 43 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.33 5.08 -2.39 -0.01 1.32 16 46 H 0.07 1.21 8.14 -2.38 -0.02 1.20 16 47 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.05 1.41 7.41 -2.39 -0.02 1.39 16 50 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 51 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 Total: -1.00 -74.33 404.77 -0.49 -74.82 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.33 Total: 26.48 kcal Atomic # 6 Polarization: -63.32 SS G_CDS: 3.75 Total: -59.57 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -0.39 Total: -84.42 kcal Atomic # 8 Polarization: -89.08 SS G_CDS: -5.90 Total: -94.98 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 92.88 SS G_CDS: -0.31 Total: 92.58 kcal Total: -74.33 -0.49 -74.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098018593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.041 kcal (2) G-P(sol) polarization free energy of solvation -74.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds