Wall clock time and date at job start Tue Mar 31 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47254 * 270.00222 * 3 2 1 5 5 H 1.48498 * 109.47092 * 30.00374 * 3 2 1 6 6 H 1.48499 * 109.47010 * 150.00328 * 3 2 1 7 7 C 1.37872 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47256 * 179.97438 * 9 7 2 11 11 C 1.40679 * 120.23995 * 275.68648 * 10 9 7 12 12 O 1.21845 * 119.98454 * 359.97438 * 11 10 9 13 13 N 1.34674 * 120.02214 * 179.70815 * 11 10 9 14 14 C 1.38619 * 132.09179 * 180.16772 * 13 11 10 15 15 C 1.38670 * 133.90103 * 0.34434 * 14 13 11 16 16 C 1.37949 * 119.85229 * 180.02562 * 15 14 13 17 17 C 1.38722 * 120.43296 * 359.97438 * 16 15 14 18 18 C 1.37653 * 120.49871 * 0.02700 * 17 16 15 19 19 C 1.39773 * 119.78460 * 359.97438 * 18 17 16 20 20 N 1.35766 * 133.33993 * 179.97438 * 19 18 17 21 21 C 1.31343 * 109.83362 * 180.02562 * 20 19 18 22 22 N 1.37935 * 130.68096 * 179.97438 * 21 20 19 23 23 H 0.97007 * 119.86784 * 0.03955 * 22 21 20 24 24 C 1.36514 * 120.23449 * 95.96203 * 10 9 7 25 25 C 1.47746 * 120.09993 * 0.02587 * 24 10 9 26 26 C 1.39626 * 120.14521 * 306.28792 * 25 24 10 27 27 C 1.37948 * 119.84129 * 179.69576 * 26 25 24 28 28 C 1.38361 * 120.15255 * 0.60364 * 27 26 25 29 29 C 1.38373 * 120.30297 * 359.67414 * 28 27 26 30 30 C 1.37941 * 120.14813 * 0.02562 * 29 28 27 31 31 H 0.96999 * 120.00537 * 359.97438 * 1 2 3 32 32 H 1.08993 * 109.47432 * 300.00811 * 9 7 2 33 33 H 1.09004 * 109.46659 * 60.00661 * 9 7 2 34 34 H 1.08001 * 120.07310 * 0.02562 * 15 14 13 35 35 H 1.08005 * 119.78523 * 180.02562 * 16 15 14 36 36 H 1.07998 * 119.75133 * 180.02562 * 17 16 15 37 37 H 1.08006 * 120.10915 * 179.97438 * 18 17 16 38 38 H 1.07998 * 120.08116 * 0.02562 * 26 25 24 39 39 H 1.08007 * 119.91987 * 180.32077 * 27 26 25 40 40 H 1.07999 * 119.84984 * 179.69371 * 28 27 26 41 41 H 1.08000 * 119.92298 * 180.02562 * 29 28 27 42 42 H 1.08003 * 120.07687 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0018 11 6 2.7815 -4.1042 -1.2118 12 8 2.4667 -3.5760 -2.2638 13 7 3.6608 -5.1242 -1.2073 14 6 4.3469 -5.7641 -2.2277 15 6 4.3951 -5.6007 -3.6039 16 6 5.2005 -6.4222 -4.3651 17 6 5.9640 -7.4116 -3.7630 18 6 5.9285 -7.5879 -2.3982 19 6 5.1176 -6.7640 -1.6126 20 7 4.8752 -6.6939 -0.2786 21 6 4.0179 -5.7300 -0.0315 22 7 3.4784 -5.2899 1.1593 23 1 3.7311 -5.7187 1.9919 24 6 2.5850 -4.2471 1.1707 25 6 2.0090 -3.7789 2.4482 26 6 2.0951 -2.4315 2.8042 27 6 1.5496 -2.0001 3.9955 28 6 0.9292 -2.9012 4.8425 29 6 0.8454 -4.2389 4.4985 30 6 1.3812 -4.6828 3.3075 31 1 -0.4851 0.8400 0.0004 32 1 0.6248 -2.5570 0.8895 33 1 0.6242 -2.5566 -0.8904 34 1 3.8034 -4.8321 -4.0787 35 1 5.2375 -6.2938 -5.4369 36 1 6.5910 -8.0483 -4.3694 37 1 6.5252 -8.3605 -1.9360 38 1 2.5830 -1.7278 2.1460 39 1 1.6110 -0.9572 4.2698 40 1 0.5082 -2.5589 5.7763 41 1 0.3594 -4.9369 5.1641 42 1 1.3148 -5.7270 3.0399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100136995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:49 Heat of formation + Delta-G solvation = 98.073516 kcal Electronic energy + Delta-G solvation = -29324.298864 eV Core-core repulsion = 25428.492174 eV Total energy + Delta-G solvation = -3895.806690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.122 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.91628 -39.85273 -38.70452 -37.75302 -36.42758 -33.81834 -33.45327 -32.01719 -30.93759 -30.60674 -29.90676 -28.80495 -27.07557 -24.87388 -23.76113 -22.58346 -22.31327 -22.11532 -21.75166 -20.79546 -18.46664 -18.10634 -17.68509 -16.77241 -16.68337 -16.47188 -16.18437 -15.43833 -14.88796 -14.76262 -14.61679 -14.49144 -14.20647 -13.78047 -13.69224 -13.23321 -13.19602 -12.96588 -12.58382 -12.44327 -12.08908 -12.03934 -11.71142 -11.47193 -11.38006 -11.08515 -10.82634 -10.79010 -10.59823 -10.57567 -10.10849 -10.01873 -9.76307 -9.59124 -8.90679 -8.65226 -8.49264 -8.40018 -8.24785 -7.35894 -6.11107 -4.14793 0.82820 0.91631 1.35917 1.67095 1.78834 2.18465 2.45550 2.75242 3.24711 3.32142 3.33994 3.73434 3.90636 4.02093 4.16681 4.36752 4.49786 4.80240 4.99690 5.05074 5.07596 5.12763 5.17156 5.21615 5.37567 5.38789 5.46085 5.63164 5.64204 5.80511 5.83717 5.97579 6.09877 6.25025 6.30793 6.36740 6.44595 6.51072 6.57460 6.68561 6.76445 6.83256 6.85574 7.04204 7.21618 7.26363 7.44072 7.59210 7.66948 7.81768 8.11392 8.22073 8.86254 9.46753 10.97523 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.010495 B = 0.004264 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.207924 B = 6565.460307 C = 8669.541625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.082 3.918 10 C -0.187 4.187 11 C 0.550 3.450 12 O -0.475 6.475 13 N -0.473 5.473 14 C 0.041 3.959 15 C -0.076 4.076 16 C -0.123 4.123 17 C -0.110 4.110 18 C -0.087 4.087 19 C 0.092 3.908 20 N -0.521 5.521 21 C 0.520 3.480 22 N -0.593 5.593 23 H 0.433 0.567 24 C 0.207 3.793 25 C -0.066 4.066 26 C -0.048 4.048 27 C -0.122 4.122 28 C -0.104 4.104 29 C -0.135 4.135 30 C -0.100 4.100 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.160 0.840 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.717 -12.452 4.893 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.044 3.956 10 C -0.197 4.197 11 C 0.348 3.652 12 O -0.346 6.346 13 N -0.185 5.185 14 C -0.062 4.062 15 C -0.097 4.097 16 C -0.143 4.143 17 C -0.130 4.130 18 C -0.107 4.107 19 C -0.025 4.025 20 N -0.251 5.251 21 C 0.167 3.833 22 N -0.218 5.218 23 H 0.273 0.727 24 C 0.104 3.896 25 C -0.067 4.067 26 C -0.066 4.066 27 C -0.140 4.140 28 C -0.123 4.123 29 C -0.153 4.153 30 C -0.119 4.119 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.177 0.823 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.628 -12.397 4.717 14.828 hybrid contribution 0.090 1.283 -0.265 1.313 sum 6.718 -11.114 4.452 13.728 Atomic orbital electron populations 1.69938 1.05924 1.26910 1.49426 1.24917 0.94793 0.98881 0.94996 0.86657 0.79838 0.83495 0.78498 1.20497 1.21023 1.19751 1.20914 0.92663 0.89716 1.51506 0.92802 1.18080 0.91093 0.87099 0.99294 1.21228 1.06997 1.04049 0.87411 1.17289 0.78016 0.77865 0.92072 1.90877 1.57339 1.53416 1.32970 1.44717 1.37049 1.29588 1.07168 1.18728 0.99135 0.97480 0.90815 1.20276 0.99708 1.00324 0.89357 1.20892 0.97535 0.96137 0.99727 1.20912 0.99697 0.98542 0.93845 1.20137 0.99003 0.99172 0.92436 1.18858 0.98658 0.96561 0.88401 1.70573 1.19500 1.19906 1.15145 1.19967 0.92432 0.90198 0.80721 1.40638 1.42096 1.33244 1.05823 0.72727 1.18862 0.89477 0.86343 0.94955 1.18203 1.02427 0.94655 0.91414 1.22017 0.95229 0.94282 0.95038 1.21151 0.98558 0.99846 0.94418 1.21290 0.98094 0.93461 0.99415 1.20899 1.01465 0.96018 0.96885 1.21144 0.98035 0.98741 0.93958 0.92695 0.93940 0.94287 0.84876 0.85105 0.85194 0.85098 0.82263 0.85597 0.86258 0.86097 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.79 13.29 55.43 0.74 -24.06 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.51 -13.36 6.68 -34.44 -0.23 -13.59 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.08 2.03 4.06 -29.04 -0.12 1.91 16 10 C -0.19 -3.99 5.06 -104.33 -0.53 -4.52 16 11 C 0.55 12.26 7.58 -15.38 -0.12 12.14 16 12 O -0.48 -11.96 16.16 5.06 0.08 -11.88 16 13 N -0.47 -9.32 2.93 -63.92 -0.19 -9.50 16 14 C 0.04 0.75 6.92 -83.81 -0.58 0.17 16 15 C -0.08 -1.22 9.81 -39.53 -0.39 -1.61 16 16 C -0.12 -1.51 10.03 -39.51 -0.40 -1.90 16 17 C -0.11 -1.22 10.01 -39.62 -0.40 -1.61 16 18 C -0.09 -1.13 10.10 -39.22 -0.40 -1.52 16 19 C 0.09 1.52 7.21 -84.72 -0.61 0.90 16 20 N -0.52 -8.84 11.31 -11.34 -0.13 -8.97 16 21 C 0.52 9.04 8.93 -318.88 -2.85 6.19 16 22 N -0.59 -8.81 5.42 -9.80 -0.05 -8.86 16 23 H 0.43 4.90 8.81 -40.82 -0.36 4.54 16 24 C 0.21 3.57 6.29 -82.14 -0.52 3.06 16 25 C -0.07 -1.04 4.63 -104.98 -0.49 -1.53 16 26 C -0.05 -0.81 7.80 -39.17 -0.31 -1.12 16 27 C -0.12 -1.79 10.03 -39.64 -0.40 -2.19 16 28 C -0.10 -1.30 10.04 -39.49 -0.40 -1.69 16 29 C -0.13 -1.59 10.03 -39.64 -0.40 -1.99 16 30 C -0.10 -1.30 9.75 -39.17 -0.38 -1.68 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.04 1.05 6.13 -51.93 -0.32 0.74 16 33 H 0.04 1.10 7.78 -51.93 -0.40 0.69 16 34 H 0.13 2.24 7.55 -52.49 -0.40 1.84 16 35 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.16 3.13 5.58 -52.49 -0.29 2.84 16 39 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -31.97 358.70 -13.03 -44.99 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.27 Total: 6.14 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -9.59 Total: -8.88 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.37 Total: -51.40 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.97 -13.03 -44.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100136995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.065 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds