Wall clock time and date at job start Tue Mar 31 2020 06:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99792 * 2 1 4 4 H 1.48507 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47370 * 299.99810 * 3 2 1 6 6 H 1.48497 * 109.47527 * 60.00025 * 3 2 1 7 7 C 1.37877 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99922 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47204 * 179.97438 * 9 7 2 11 11 C 1.46955 * 111.00233 * 189.99950 * 10 9 7 12 12 C 1.53049 * 109.36962 * 176.80960 * 11 10 9 13 13 N 1.46956 * 109.37889 * 58.38792 * 12 11 10 14 14 C 1.37231 * 110.99927 * 176.82155 * 13 12 11 15 15 C 1.47005 * 135.02171 * 0.02562 * 14 13 12 16 16 O 1.21675 * 135.02326 * 0.02562 * 15 14 13 17 17 C 1.48261 * 89.95675 * 179.97438 * 15 14 13 18 18 O 1.21674 * 136.55942 * 180.02562 * 17 15 14 19 19 C 1.40158 * 135.02363 * 179.63800 * 14 13 12 20 20 N 1.37220 * 133.39506 * 359.97438 * 19 14 13 21 21 C 1.46898 * 110.99863 * 180.02562 * 20 19 14 22 22 C 1.50711 * 109.47298 * 180.02562 * 21 20 19 23 23 C 1.34511 * 125.78799 * 89.99833 * 22 21 20 24 24 C 1.41384 * 106.83977 * 180.02562 * 23 22 21 25 25 C 1.34517 * 106.83942 * 0.02562 * 24 23 22 26 26 O 1.34302 * 125.78551 * 269.69566 * 22 21 20 27 27 C 1.46957 * 110.88202 * 300.71439 * 13 12 11 28 28 C 1.46955 * 111.00423 * 66.19888 * 10 9 7 29 29 H 0.97003 * 120.00145 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47078 * 59.99599 * 9 7 2 31 31 H 1.09007 * 109.46970 * 299.99687 * 9 7 2 32 32 H 1.09005 * 109.49150 * 56.83886 * 11 10 9 33 33 H 1.09006 * 109.48712 * 296.78139 * 11 10 9 34 34 H 1.09002 * 109.49200 * 178.36943 * 12 11 10 35 35 H 1.09002 * 109.48985 * 298.41362 * 12 11 10 36 36 H 1.00909 * 110.99647 * 56.05469 * 20 19 14 37 37 H 1.09000 * 109.47402 * 300.00278 * 21 20 19 38 38 H 1.08995 * 109.47410 * 60.00259 * 21 20 19 39 39 H 1.08000 * 126.58130 * 359.96747 * 23 22 21 40 40 H 1.07994 * 126.58271 * 179.97438 * 24 23 22 41 41 H 1.07991 * 125.79124 * 180.02562 * 25 24 23 42 42 H 1.08997 * 109.47347 * 299.31758 * 27 13 12 43 43 H 1.09002 * 109.50396 * 179.27890 * 27 13 12 44 44 H 1.09002 * 109.48806 * 303.15815 * 28 10 9 45 45 H 1.09003 * 109.48675 * 63.21848 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5210 -4.8939 -0.2377 12 6 2.5565 -6.0187 -0.3094 13 7 3.3200 -6.0593 0.9456 14 6 4.2118 -7.1024 0.9451 15 6 4.5688 -8.1648 -0.0060 16 8 4.1964 -8.4840 -1.1196 17 6 5.5717 -8.6855 0.9537 18 8 6.3732 -9.6005 0.9846 19 6 5.1646 -7.5926 1.8486 20 7 5.5675 -7.1988 3.0998 21 6 6.6249 -8.0796 3.6138 22 6 7.0404 -7.6174 4.9868 23 6 6.5009 -8.0235 6.1502 24 6 7.1874 -7.3407 7.1804 25 6 8.1050 -6.5578 6.5849 26 8 8.0159 -6.7346 5.2565 27 6 4.0043 -4.7809 1.1841 28 6 2.9688 -3.6562 1.2558 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8904 32 1 0.9733 -4.8433 -1.1788 33 1 0.8254 -5.0914 0.5780 34 1 2.0486 -6.9718 -0.4572 35 1 3.2354 -5.8355 -1.1423 36 1 4.7856 -7.1623 3.7366 37 1 6.2500 -9.1013 3.6728 38 1 7.4837 -8.0458 2.9434 39 1 5.6970 -8.7340 6.2735 40 1 7.0088 -7.4299 8.2418 41 1 8.7996 -5.9028 7.0896 42 1 4.6998 -4.5834 0.3685 43 1 4.5522 -4.8313 2.1250 44 1 3.4767 -2.7031 1.4035 45 1 2.2896 -3.8396 2.0884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101696322.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:49 Heat of formation + Delta-G solvation = 34.348705 kcal Electronic energy + Delta-G solvation = -29390.517701 eV Core-core repulsion = 25184.638776 eV Total energy + Delta-G solvation = -4205.878924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.92060 -41.46185 -39.14726 -38.24878 -37.36399 -35.71442 -34.02033 -33.25672 -32.43318 -30.85645 -30.45779 -28.30067 -26.16134 -25.48273 -23.58802 -22.71675 -22.29474 -22.09565 -21.57817 -20.86503 -19.67187 -18.52724 -18.03664 -17.52999 -17.08349 -16.64895 -16.37274 -16.21466 -15.84042 -15.39734 -15.04291 -14.87975 -14.64838 -14.53167 -14.37284 -14.22233 -13.85797 -13.68744 -13.58948 -13.22912 -13.19510 -13.02646 -12.57262 -12.27871 -12.01481 -11.95695 -11.49035 -11.35234 -11.10035 -10.93375 -10.85446 -10.63212 -10.48885 -10.30261 -10.26185 -9.89232 -9.33876 -9.21964 -8.91284 -8.51212 -7.81160 -7.42300 -6.09977 -4.12031 0.17775 0.56013 1.27188 2.20429 2.54956 2.74568 2.87570 3.26672 3.34671 3.36573 3.38698 3.40997 3.64167 4.20025 4.26441 4.35572 4.52520 4.62954 4.68255 4.74995 4.83825 4.93879 5.10642 5.21036 5.27005 5.40032 5.42695 5.51006 5.54171 5.59613 5.68884 5.77354 5.88094 6.03301 6.10732 6.19970 6.30482 6.37423 6.45340 6.52153 6.60649 6.72150 6.76936 7.16264 7.21510 7.23796 7.69402 7.94791 8.05513 8.41545 8.95325 9.52911 11.00839 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009436 B = 0.002725 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.593215 B =10271.035059 C =12604.171524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.054 3.946 12 C 0.055 3.945 13 N -0.438 5.438 14 C 0.058 3.942 15 C 0.335 3.665 16 O -0.399 6.399 17 C 0.348 3.652 18 O -0.406 6.406 19 C 0.002 3.998 20 N -0.573 5.573 21 C 0.136 3.864 22 C -0.017 4.017 23 C -0.195 4.195 24 C -0.217 4.217 25 C -0.029 4.029 26 O -0.166 6.166 27 C 0.058 3.942 28 C 0.064 3.936 29 H 0.261 0.739 30 H 0.032 0.968 31 H -0.006 1.006 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.373 0.627 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.204 0.796 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.213 -17.219 11.834 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.265 5.265 11 C -0.075 4.075 12 C -0.070 4.070 13 N -0.149 5.149 14 C -0.056 4.056 15 C 0.207 3.793 16 O -0.271 6.271 17 C 0.222 3.778 18 O -0.279 6.279 19 C -0.111 4.111 20 N -0.202 5.202 21 C 0.010 3.990 22 C -0.068 4.068 23 C -0.215 4.215 24 C -0.236 4.236 25 C -0.098 4.098 26 O -0.061 6.061 27 C -0.066 4.066 28 C -0.065 4.065 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.012 0.988 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.204 0.796 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.221 0.779 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.824 -17.025 10.859 23.921 hybrid contribution -0.440 0.456 0.870 1.076 sum 12.384 -16.569 11.729 23.779 Atomic orbital electron populations 1.69959 1.06089 1.26802 1.50794 1.24986 0.94860 0.99374 0.95311 0.86449 0.80078 0.83382 0.77563 1.19618 1.20980 1.21079 1.21163 0.93502 0.89846 1.50355 0.91783 1.19725 0.89931 0.87049 0.96376 1.62343 1.28418 1.02788 1.32908 1.22124 0.94347 0.89461 1.01553 1.22509 0.96531 1.00429 0.87573 1.57900 1.20116 1.02769 1.34115 1.23548 0.91984 0.96626 0.93457 1.24971 0.83526 0.84231 0.86538 1.90736 1.56431 1.63400 1.16534 1.24345 0.83375 0.82377 0.87658 1.90738 1.31955 1.27477 1.77708 1.23365 0.99093 0.95061 0.93586 1.56109 1.14159 1.48314 1.01603 1.20462 0.95067 0.93836 0.89679 1.21946 0.93059 0.95731 0.96044 1.21682 1.03650 1.04665 0.91552 1.21852 0.99775 1.01271 1.00747 1.24144 1.02654 1.02904 0.80063 1.84058 1.46169 1.50305 1.25589 1.22654 0.96500 0.84964 1.02453 1.22079 0.95356 0.97344 0.91686 0.92887 0.94961 0.98839 0.89822 0.94631 0.89655 0.91691 0.79599 0.89632 0.87723 0.83310 0.83257 0.77896 0.92005 0.89118 0.88418 0.94776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.51 -13.66 8.47 -34.44 -0.29 -13.95 16 8 H 0.06 1.69 7.13 -52.49 -0.37 1.32 16 9 C 0.19 4.78 4.72 -4.98 -0.02 4.76 16 10 N -0.54 -10.74 4.70 -235.91 -1.11 -11.85 16 11 C 0.05 0.90 5.61 -3.77 -0.02 0.88 16 12 C 0.05 0.77 4.85 -3.77 -0.02 0.75 16 13 N -0.44 -5.69 4.74 -168.84 -0.80 -6.49 16 14 C 0.06 0.66 6.52 -81.54 -0.53 0.13 16 15 C 0.33 4.08 8.50 -38.69 -0.33 3.76 16 16 O -0.40 -5.87 17.70 5.21 0.09 -5.77 16 17 C 0.35 3.84 8.65 -32.27 -0.28 3.56 16 18 O -0.41 -5.14 17.70 5.21 0.09 -5.05 16 19 C 0.00 0.02 7.38 -87.96 -0.65 -0.63 16 20 N -0.57 -4.84 6.54 -62.43 -0.41 -5.25 16 21 C 0.14 1.06 5.31 -4.97 -0.03 1.03 16 22 C -0.02 -0.15 6.83 -35.62 -0.24 -0.39 16 23 C -0.20 -1.51 10.81 -39.70 -0.43 -1.94 16 24 C -0.22 -1.59 10.91 -39.70 -0.43 -2.02 16 25 C -0.03 -0.21 12.09 29.42 0.36 0.14 16 26 O -0.17 -1.61 10.65 5.70 0.06 -1.55 16 27 C 0.06 0.80 5.52 -3.77 -0.02 0.78 16 28 C 0.06 1.12 5.43 -3.77 -0.02 1.10 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.03 0.85 8.03 -51.93 -0.42 0.44 16 31 H -0.01 -0.16 8.12 -51.92 -0.42 -0.59 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.07 8.05 -51.93 -0.42 0.66 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.37 2.68 8.74 -39.29 -0.34 2.34 16 37 H 0.09 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.10 0.88 8.13 -51.93 -0.42 0.46 16 39 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.20 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.10 8.03 -51.93 -0.42 0.69 16 44 H 0.10 1.84 6.79 -51.93 -0.35 1.49 16 45 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -31.32 387.49 -9.68 -40.99 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.10 Total: -1.05 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -3.06 Total: -0.63 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -1.58 Total: -48.74 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.25 Total: -12.38 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.32 -9.68 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101696322.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.344 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds