Wall clock time and date at job start Tue Mar 31 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47105 * 2 1 4 4 C 1.52995 * 109.46908 * 240.00027 * 2 1 3 5 5 C 1.52998 * 109.46908 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47407 * 60.00215 * 5 4 2 7 7 C 1.53008 * 109.46699 * 299.99873 * 6 5 4 8 8 H 1.09000 * 109.46556 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.47058 * 299.99695 * 7 6 5 10 10 C 1.34775 * 120.00020 * 274.99974 * 9 7 6 11 11 O 1.21581 * 120.00375 * 0.02562 * 10 9 7 12 12 C 1.47598 * 119.99755 * 180.02562 * 10 9 7 13 13 C 1.39782 * 120.06351 * 180.02562 * 12 10 9 14 14 C 1.37627 * 119.93696 * 179.74722 * 13 12 10 15 15 C 1.39257 * 120.06308 * 0.22989 * 14 13 12 16 16 N 1.39101 * 119.93469 * 180.02562 * 15 14 13 17 17 C 1.34776 * 120.00182 * 33.62596 * 16 15 14 18 18 O 1.21724 * 119.99872 * 5.28201 * 17 16 15 19 19 C 1.46193 * 119.99937 * 185.28149 * 17 16 15 20 20 H 1.08005 * 120.00374 * 0.02562 * 19 17 16 21 21 C 1.40120 * 120.00110 * 180.02562 * 19 17 16 22 22 N 1.30643 * 120.00182 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 120.00213 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47352 * 60.00017 * 23 21 19 25 25 H 1.48500 * 109.47654 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47209 * 299.99866 * 23 21 19 27 27 C 1.39248 * 120.12660 * 0.02562 * 15 14 13 28 28 C 1.37636 * 120.06124 * 0.02775 * 27 15 14 29 29 C 1.52998 * 109.47088 * 59.99931 * 7 6 5 30 30 H 1.09003 * 109.47105 * 59.99877 * 29 7 6 31 31 C 1.52993 * 109.47229 * 179.97438 * 29 7 6 32 32 H 1.09003 * 109.47105 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47214 * 300.00175 * 1 2 3 34 34 H 1.09001 * 109.47616 * 59.99818 * 1 2 3 35 35 H 1.08999 * 109.47499 * 60.00364 * 4 2 1 36 36 H 1.09003 * 109.47215 * 299.99906 * 4 2 1 37 37 H 1.08998 * 109.47538 * 300.00108 * 5 4 2 38 38 H 1.09004 * 109.47214 * 179.97438 * 5 4 2 39 39 H 1.08997 * 109.47474 * 179.97438 * 6 5 4 40 40 H 1.09003 * 109.47186 * 59.99807 * 6 5 4 41 41 H 0.97004 * 119.99338 * 95.00427 * 9 7 6 42 42 H 1.08006 * 120.02737 * 0.02562 * 13 12 10 43 43 H 1.08002 * 119.96600 * 180.25272 * 14 13 12 44 44 H 0.96996 * 119.99775 * 213.63358 * 16 15 14 45 45 H 0.96994 * 120.00242 * 179.97438 * 22 21 19 46 46 H 1.07998 * 119.97074 * 179.97438 * 27 15 14 47 47 H 1.08008 * 120.02829 * 180.02562 * 28 27 15 48 48 H 1.09003 * 109.46898 * 60.00092 * 31 29 7 49 49 H 1.08997 * 109.47234 * 179.97438 * 31 29 7 50 50 H 1.09000 * 109.47583 * 300.00379 * 31 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5699 -0.7218 -1.2489 6 6 4.0794 -1.4435 0.0003 7 6 3.5694 -0.7221 1.2496 8 1 3.9321 -1.2366 2.1395 9 7 4.0583 0.6589 1.2499 10 6 5.2803 0.9410 1.7435 11 8 5.9771 0.0494 2.1881 12 6 5.7725 2.3325 1.7443 13 6 7.0399 2.6266 2.2553 14 6 7.4984 3.9243 2.2500 15 6 6.6991 4.9445 1.7405 16 7 7.1655 6.2550 1.7359 17 6 8.4780 6.5027 1.5558 18 8 9.2405 5.5886 1.3014 19 6 8.9858 7.8691 1.6658 20 1 8.3093 8.6802 1.8918 21 6 10.3502 8.1267 1.4779 22 7 11.1687 7.1458 1.2050 23 14 10.9993 9.8726 1.6192 24 1 10.7195 10.3962 2.9804 25 1 12.4648 9.8770 1.3794 26 1 10.3297 10.7328 0.6107 27 6 5.4341 4.6552 1.2356 28 6 4.9699 3.3595 1.2394 29 6 2.0394 -0.7216 1.2493 30 1 1.6757 -1.7491 1.2490 31 6 1.5294 -0.0009 2.4988 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.6766 -0.2074 -2.1392 36 1 1.6766 -1.7489 -1.2492 37 1 3.9337 0.3057 -1.2486 38 1 3.9333 -1.2360 -2.1387 39 1 5.1694 -1.4443 0.0003 40 1 3.7157 -2.4710 0.0001 41 1 3.5024 1.3701 0.8949 42 1 7.6605 1.8356 2.6499 43 1 8.4792 4.1514 2.6411 44 1 6.5460 6.9906 1.8626 45 1 12.1132 7.3241 1.0746 46 1 4.8162 5.4484 0.8414 47 1 3.9888 3.1357 0.8472 48 1 1.8932 1.0267 2.4994 49 1 0.4395 -0.0001 2.4983 50 1 1.8924 -0.5153 3.3886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103434925.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:45 Heat of formation + Delta-G solvation = -76.200936 kcal Electronic energy + Delta-G solvation = -29973.735406 eV Core-core repulsion = 25964.321695 eV Total energy + Delta-G solvation = -4009.413711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.65779 -39.37467 -38.30289 -36.71794 -34.21182 -33.60253 -33.26255 -32.55295 -31.34638 -30.35292 -29.16578 -27.40672 -26.44963 -25.78388 -23.39084 -22.46712 -21.99476 -21.23241 -20.81067 -19.86888 -19.05587 -17.90507 -17.56834 -16.31390 -16.07126 -15.56677 -15.44405 -15.03415 -14.91120 -14.62810 -14.40832 -14.18797 -13.97411 -13.84535 -13.57204 -13.36695 -13.11629 -12.76083 -12.73418 -12.59502 -12.32004 -12.16577 -12.08132 -11.95408 -11.88220 -11.70657 -11.68255 -11.35739 -11.12790 -11.08887 -10.78057 -10.76981 -10.65349 -10.42798 -10.39883 -10.18974 -9.67981 -9.43467 -9.00971 -8.94266 -8.58181 -7.86564 -7.23254 -6.42357 -4.90739 1.35343 1.88278 3.03925 3.09958 3.11867 3.22569 3.27602 3.92535 4.21049 4.31765 4.34358 4.40060 4.45711 4.51432 4.72908 4.88171 5.00076 5.09573 5.10625 5.13728 5.19541 5.23108 5.26928 5.34027 5.38067 5.48841 5.54125 5.55176 5.60224 5.65579 5.72375 5.74576 5.82476 5.87975 5.96087 5.97021 6.04776 6.07411 6.09671 6.14671 6.18926 6.42670 6.55768 6.60200 6.89223 6.94938 7.19917 7.26142 7.61396 7.63877 7.92189 8.05098 8.43224 8.76762 9.08047 10.27936 10.47903 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.023228 B = 0.002064 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.137391 B =13561.757875 C =13863.255477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.131 4.131 7 C 0.152 3.848 8 H 0.087 0.913 9 N -0.724 5.724 10 C 0.569 3.431 11 O -0.548 6.548 12 C -0.195 4.195 13 C -0.034 4.034 14 C -0.142 4.142 15 C 0.226 3.774 16 N -0.696 5.696 17 C 0.539 3.461 18 O -0.555 6.555 19 C -0.537 4.537 20 H 0.073 0.927 21 C 0.085 3.915 22 N -0.757 5.757 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.266 1.266 27 C -0.189 4.189 28 C -0.062 4.062 29 C -0.093 4.093 30 H 0.083 0.917 31 C -0.150 4.150 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.396 0.604 42 H 0.129 0.871 43 H 0.144 0.856 44 H 0.395 0.605 45 H 0.274 0.726 46 H 0.122 0.878 47 H 0.114 0.886 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.144 -11.995 -1.915 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.170 4.170 7 C 0.048 3.952 8 H 0.105 0.895 9 N -0.377 5.377 10 C 0.359 3.641 11 O -0.427 6.427 12 C -0.199 4.199 13 C -0.054 4.054 14 C -0.163 4.163 15 C 0.124 3.876 16 N -0.338 5.338 17 C 0.346 3.654 18 O -0.437 6.437 19 C -0.572 4.572 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.384 5.384 23 Si 0.739 3.261 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.191 1.191 27 C -0.210 4.210 28 C -0.081 4.081 29 C -0.111 4.111 30 H 0.101 0.899 31 C -0.207 4.207 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.233 0.767 42 H 0.147 0.853 43 H 0.162 0.838 44 H 0.229 0.771 45 H 0.085 0.915 46 H 0.140 0.860 47 H 0.132 0.868 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.803 -13.254 -1.812 23.898 hybrid contribution -0.274 1.641 -0.209 1.676 sum -20.077 -11.613 -2.021 23.282 Atomic orbital electron populations 1.21889 0.95039 1.01839 1.01838 1.21170 0.95651 0.99446 0.94459 0.91387 1.21611 0.95682 1.00586 0.97259 1.21508 0.95220 1.01321 0.97702 1.21929 1.01615 0.98952 0.94483 1.20904 0.92736 0.82812 0.98790 0.89483 1.45989 1.17993 1.09423 1.64302 1.18326 0.80729 0.88647 0.76440 1.90728 1.56397 1.48296 1.47273 1.19556 0.97493 0.92085 1.10793 1.21059 0.93425 0.96362 0.94572 1.21334 1.01778 0.91600 1.01553 1.18202 0.92111 0.86930 0.90331 1.44253 1.11622 1.03985 1.73916 1.18440 0.78362 0.90985 0.77598 1.90659 1.54764 1.46567 1.51667 1.20828 0.93699 0.91812 1.50893 0.90916 1.25760 0.96629 0.98633 0.92609 1.69965 1.04289 1.32386 1.31793 0.86310 0.78053 0.82159 0.79617 1.19065 1.20338 1.19093 1.20776 0.97496 0.96792 1.05978 1.20786 0.97840 0.92198 0.97289 1.21445 0.93945 1.00656 0.95103 0.89915 1.21890 1.00920 1.00932 0.97005 0.92711 0.92249 0.92730 0.91978 0.91965 0.91726 0.92056 0.91178 0.91349 0.76715 0.85346 0.83811 0.77083 0.91507 0.85967 0.86809 0.92378 0.92229 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.84 37.16 0.33 -0.51 16 2 C -0.09 -0.58 2.08 -90.62 -0.19 -0.77 16 3 H 0.07 0.47 6.51 -51.93 -0.34 0.13 16 4 C -0.11 -0.78 5.20 -26.73 -0.14 -0.92 16 5 C -0.12 -1.03 5.77 -26.73 -0.15 -1.18 16 6 C -0.13 -1.27 5.60 -26.73 -0.15 -1.42 16 7 C 0.15 1.50 2.23 -67.93 -0.15 1.35 16 8 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16 9 N -0.72 -8.09 3.49 -54.83 -0.19 -8.28 16 10 C 0.57 8.76 7.73 -12.44 -0.10 8.66 16 11 O -0.55 -10.22 16.00 5.29 0.08 -10.14 16 12 C -0.19 -3.18 5.88 -104.93 -0.62 -3.79 16 13 C -0.03 -0.64 9.58 -39.23 -0.38 -1.02 16 14 C -0.14 -2.97 8.62 -39.43 -0.34 -3.31 16 15 C 0.23 4.49 6.27 -83.81 -0.53 3.96 16 16 N -0.70 -14.84 5.30 -11.19 -0.06 -14.90 16 17 C 0.54 14.43 7.46 -13.07 -0.10 14.33 16 18 O -0.56 -16.89 12.69 5.17 0.07 -16.82 16 19 C -0.54 -14.17 9.54 -35.68 -0.34 -14.51 16 20 H 0.07 1.72 7.85 -52.48 -0.41 1.31 16 21 C 0.09 2.25 5.50 -17.35 -0.10 2.15 16 22 N -0.76 -21.54 11.83 55.55 0.66 -20.88 16 23 Si 0.91 19.03 29.56 -169.99 -5.02 14.00 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.19 -3.00 9.94 -39.43 -0.39 -3.39 16 28 C -0.06 -0.87 9.53 -39.23 -0.37 -1.25 16 29 C -0.09 -0.67 2.04 -90.62 -0.18 -0.85 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 C -0.15 -1.09 8.68 37.15 0.32 -0.77 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.32 6.43 -51.93 -0.33 -0.01 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.63 7.60 -51.93 -0.39 0.23 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.40 3.70 4.67 -40.82 -0.19 3.51 16 42 H 0.13 2.37 7.64 -52.48 -0.40 1.97 16 43 H 0.14 3.45 6.41 -52.49 -0.34 3.11 16 44 H 0.40 7.06 8.79 -40.82 -0.36 6.70 16 45 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 46 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 47 H 0.11 1.18 6.39 -52.48 -0.34 0.84 16 48 H 0.06 0.46 7.45 -51.93 -0.39 0.07 16 49 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 50 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -32.92 394.05 -9.68 -42.60 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.58 Total: 11.71 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.57 Total: -3.23 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.41 Total: -44.06 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: 0.15 Total: -26.96 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.92 -9.68 -42.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103434925.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.604 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds