Wall clock time and date at job start Tue Mar 31 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47259 * 2 1 4 4 C 1.52999 * 109.47386 * 239.99936 * 2 1 3 5 5 C 1.53004 * 109.47049 * 180.02562 * 4 2 1 6 6 C 1.52991 * 109.47145 * 60.00228 * 5 4 2 7 7 C 1.53002 * 109.47311 * 299.99833 * 6 5 4 8 8 H 1.08997 * 109.46793 * 300.00097 * 7 6 5 9 9 N 1.46499 * 109.47484 * 180.02562 * 7 6 5 10 10 C 1.34774 * 120.00060 * 84.99745 * 9 7 6 11 11 O 1.21587 * 120.00239 * 359.97438 * 10 9 7 12 12 C 1.47599 * 119.99860 * 180.02562 * 10 9 7 13 13 C 1.39782 * 120.06212 * 359.72822 * 12 10 9 14 14 C 1.37632 * 119.93636 * 179.78717 * 13 12 10 15 15 C 1.39257 * 120.06101 * 0.46672 * 14 13 12 16 16 N 1.39104 * 119.93592 * 179.76752 * 15 14 13 17 17 C 1.34771 * 119.99925 * 213.41651 * 16 15 14 18 18 O 1.21729 * 119.99848 * 5.12815 * 17 16 15 19 19 C 1.46196 * 120.00099 * 185.12302 * 17 16 15 20 20 H 1.07996 * 120.00147 * 6.08583 * 19 17 16 21 21 C 1.40127 * 120.00058 * 186.08308 * 19 17 16 22 22 N 1.30643 * 119.99872 * 353.82036 * 21 19 17 23 23 Si 1.86794 * 120.00050 * 173.81646 * 21 19 17 24 24 H 1.48503 * 109.47072 * 94.98554 * 23 21 19 25 25 H 1.48498 * 109.47371 * 214.98712 * 23 21 19 26 26 H 1.48506 * 109.47200 * 334.98712 * 23 21 19 27 27 C 1.39253 * 120.12358 * 359.78260 * 15 14 13 28 28 C 1.37627 * 120.06546 * 359.97438 * 27 15 14 29 29 C 1.52997 * 109.47035 * 59.99797 * 7 6 5 30 30 H 1.09000 * 109.46687 * 60.00173 * 29 7 6 31 31 C 1.52999 * 109.47204 * 180.02562 * 29 7 6 32 32 H 1.09000 * 109.46862 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47352 * 299.99803 * 1 2 3 34 34 H 1.09001 * 109.47244 * 60.00255 * 1 2 3 35 35 H 1.09001 * 109.47008 * 60.00263 * 4 2 1 36 36 H 1.09000 * 109.47422 * 300.00027 * 4 2 1 37 37 H 1.09000 * 109.47099 * 299.99440 * 5 4 2 38 38 H 1.09006 * 109.47174 * 180.02562 * 5 4 2 39 39 H 1.09000 * 109.47220 * 60.00155 * 6 5 4 40 40 H 1.09000 * 109.47080 * 179.97438 * 6 5 4 41 41 H 0.96999 * 119.99727 * 265.00515 * 9 7 6 42 42 H 1.08005 * 120.03135 * 0.02562 * 13 12 10 43 43 H 1.07998 * 119.96935 * 180.25097 * 14 13 12 44 44 H 0.96997 * 119.99813 * 33.40873 * 16 15 14 45 45 H 0.96996 * 119.99507 * 179.97438 * 22 21 19 46 46 H 1.08001 * 119.96452 * 179.97438 * 27 15 14 47 47 H 1.08000 * 120.02730 * 179.97438 * 28 27 15 48 48 H 1.08997 * 109.47513 * 180.02562 * 31 29 7 49 49 H 1.09001 * 109.47008 * 300.00062 * 31 29 7 50 50 H 1.08997 * 109.46974 * 60.00086 * 31 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7222 1.2497 8 1 3.9331 0.3053 1.2499 9 7 4.0577 -1.4128 2.4458 10 6 5.2796 -1.1270 2.9374 11 8 5.9770 -0.2963 2.3878 12 6 5.7718 -1.8232 4.1422 13 6 4.9693 -2.7750 4.7778 14 6 5.4325 -3.4258 5.8985 15 6 6.6955 -3.1298 6.4051 16 7 7.1591 -3.7857 7.5408 17 6 7.9603 -3.1406 8.4116 18 8 8.2028 -1.9581 8.2544 19 6 8.5382 -3.8610 9.5449 20 1 8.4044 -4.9292 9.6308 21 6 9.2657 -3.1654 10.5198 22 7 9.5310 -1.8968 10.3557 23 14 9.8562 -4.0522 12.0542 24 1 11.2520 -4.5167 11.8512 25 1 9.8069 -3.1239 13.2123 26 1 8.9791 -5.2209 12.3190 27 6 7.4949 -2.1783 5.7770 28 6 7.0389 -1.5280 4.6530 29 6 2.0395 -0.7216 1.2493 30 1 1.6758 -1.7491 1.2490 31 6 1.5294 0.0002 2.4982 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.6767 -0.2074 -2.1392 36 1 1.6767 -1.7489 -1.2493 37 1 3.9337 0.3058 -1.2487 38 1 3.9335 -1.2352 -2.1390 39 1 3.7158 -2.4709 0.0001 40 1 5.1694 -1.4441 0.0004 41 1 3.5015 -2.0758 2.8840 42 1 3.9882 -3.0023 4.3875 43 1 4.8146 -4.1643 6.3876 44 1 6.9056 -4.7072 7.7061 45 1 10.0343 -1.4153 11.0307 46 1 8.4738 -1.9504 6.1723 47 1 7.6593 -0.7898 4.1666 48 1 0.4394 0.0002 2.4982 49 1 1.8923 -0.5136 3.3884 50 1 1.8931 1.0276 2.4980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103434928.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:51 Heat of formation + Delta-G solvation = -79.624627 kcal Electronic energy + Delta-G solvation = -29481.673923 eV Core-core repulsion = 25472.111750 eV Total energy + Delta-G solvation = -4009.562173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.45335 -39.37614 -38.39986 -36.73459 -34.58062 -33.60472 -33.33800 -32.56196 -31.16151 -30.33133 -29.16541 -27.34075 -26.43571 -25.78697 -23.44767 -22.46066 -21.55465 -21.32524 -20.62335 -20.14329 -19.53101 -17.82541 -17.55331 -16.31318 -16.17755 -15.55426 -15.15155 -15.02004 -14.89792 -14.78856 -14.40266 -14.34294 -14.06794 -13.92067 -13.54650 -13.17524 -13.07643 -12.84675 -12.74428 -12.68163 -12.40530 -12.13322 -12.04269 -12.00173 -11.86617 -11.71429 -11.37271 -11.31000 -11.14444 -11.13571 -10.79525 -10.76570 -10.65841 -10.61454 -10.40446 -10.34303 -9.65581 -9.45064 -9.02561 -8.94958 -8.58399 -7.86411 -7.23615 -6.43926 -4.90576 1.34704 1.88178 3.01615 3.10037 3.13742 3.20935 3.21505 3.92260 4.19914 4.28392 4.37857 4.46004 4.47527 4.49506 4.70587 4.84111 4.98204 5.08797 5.11519 5.13382 5.17093 5.22068 5.25423 5.33952 5.35105 5.45876 5.51309 5.53016 5.61858 5.64704 5.74255 5.76514 5.82263 5.88089 5.91398 5.96123 5.97628 6.06949 6.07893 6.14427 6.21186 6.42520 6.52719 6.59884 6.88793 6.94725 7.19892 7.25932 7.60863 7.62609 7.91709 8.05337 8.41537 8.76523 9.07531 10.27077 10.46968 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030489 B = 0.001842 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.136118 B =15201.301882 C =15469.516744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.130 4.130 7 C 0.152 3.848 8 H 0.087 0.913 9 N -0.729 5.729 10 C 0.569 3.431 11 O -0.547 6.547 12 C -0.196 4.196 13 C -0.061 4.061 14 C -0.189 4.189 15 C 0.226 3.774 16 N -0.696 5.696 17 C 0.539 3.461 18 O -0.555 6.555 19 C -0.537 4.537 20 H 0.074 0.926 21 C 0.086 3.914 22 N -0.756 5.756 23 Si 0.914 3.086 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.263 1.263 27 C -0.143 4.143 28 C -0.034 4.034 29 C -0.092 4.092 30 H 0.074 0.926 31 C -0.151 4.151 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.397 0.603 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.396 0.604 45 H 0.273 0.727 46 H 0.145 0.855 47 H 0.129 0.871 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.962 -1.468 -18.523 25.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.169 4.169 7 C 0.047 3.953 8 H 0.105 0.895 9 N -0.380 5.380 10 C 0.359 3.641 11 O -0.426 6.426 12 C -0.200 4.200 13 C -0.080 4.080 14 C -0.211 4.211 15 C 0.124 3.876 16 N -0.337 5.337 17 C 0.346 3.654 18 O -0.437 6.437 19 C -0.573 4.573 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.383 5.383 23 Si 0.738 3.262 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.187 1.187 27 C -0.164 4.164 28 C -0.054 4.054 29 C -0.111 4.111 30 H 0.092 0.908 31 C -0.208 4.208 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.232 0.768 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.229 0.771 45 H 0.084 0.916 46 H 0.162 0.838 47 H 0.147 0.853 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.113 0.137 -18.827 24.781 hybrid contribution -0.183 -1.275 1.160 1.733 sum -16.296 -1.137 -17.667 24.062 Atomic orbital electron populations 1.21879 0.95011 1.01849 1.01819 1.21116 0.95589 0.99737 0.93852 0.90915 1.21633 0.95592 1.00678 0.97386 1.21491 0.95383 1.01077 0.97555 1.21933 1.01526 0.99382 0.94023 1.20940 0.92784 0.97454 0.84074 0.89508 1.45956 1.18099 1.44066 1.29901 1.18329 0.80690 0.81512 0.83526 1.90732 1.56405 1.34320 1.61149 1.19550 0.97761 1.03623 0.99098 1.20801 0.97838 0.94641 0.94757 1.20776 0.94970 1.05303 1.00052 1.18215 0.90931 0.92257 0.86158 1.44259 1.52232 1.15757 1.21489 1.18453 0.78082 0.86952 0.81896 1.90658 1.62131 1.15930 1.74976 1.20860 1.34355 0.95132 1.06960 0.90821 1.25762 0.94102 0.94667 0.99079 1.69983 1.27441 1.08573 1.32339 0.86252 0.79533 0.79887 0.80573 1.19584 1.20177 1.18675 1.21341 1.01706 0.98685 0.94633 1.21057 0.93805 0.96590 0.93931 1.21419 0.93916 1.00315 0.95456 0.90763 1.21901 1.00936 1.00840 0.97134 0.92714 0.92230 0.92735 0.91923 0.91933 0.91753 0.91798 0.91918 0.91241 0.76780 0.86651 0.85942 0.77053 0.91571 0.83763 0.85342 0.92205 0.92343 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.84 37.15 0.33 -0.51 16 2 C -0.08 -0.56 2.25 -90.62 -0.20 -0.77 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.12 -0.75 5.20 -26.73 -0.14 -0.88 16 5 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 6 C -0.13 -1.24 5.49 -26.73 -0.15 -1.38 16 7 C 0.15 1.53 1.90 -67.93 -0.13 1.40 16 8 H 0.09 1.07 7.57 -51.93 -0.39 0.68 16 9 N -0.73 -8.23 4.33 -54.83 -0.24 -8.47 16 10 C 0.57 8.84 7.73 -12.44 -0.10 8.74 16 11 O -0.55 -10.29 16.00 5.29 0.08 -10.20 16 12 C -0.20 -3.20 5.88 -104.93 -0.62 -3.82 16 13 C -0.06 -0.86 9.53 -39.23 -0.37 -1.23 16 14 C -0.19 -3.00 9.94 -39.42 -0.39 -3.40 16 15 C 0.23 4.49 6.27 -83.80 -0.53 3.97 16 16 N -0.70 -14.84 5.30 -11.19 -0.06 -14.90 16 17 C 0.54 14.43 7.46 -13.07 -0.10 14.33 16 18 O -0.56 -16.90 12.70 5.16 0.07 -16.83 16 19 C -0.54 -14.20 9.53 -35.68 -0.34 -14.54 16 20 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 21 C 0.09 2.25 5.50 -17.35 -0.10 2.16 16 22 N -0.76 -21.50 11.85 55.55 0.66 -20.85 16 23 Si 0.91 19.01 29.56 -169.99 -5.03 13.98 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 27 C -0.14 -3.00 8.62 -39.43 -0.34 -3.34 16 28 C -0.03 -0.64 9.58 -39.23 -0.38 -1.01 16 29 C -0.09 -0.69 1.83 -90.62 -0.17 -0.86 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 C -0.15 -1.18 8.68 37.16 0.32 -0.86 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.34 6.43 -51.93 -0.33 0.00 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.40 3.58 6.41 -40.82 -0.26 3.32 16 42 H 0.12 1.17 6.39 -52.48 -0.34 0.83 16 43 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.40 7.07 8.79 -40.82 -0.36 6.71 16 45 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 46 H 0.14 3.46 6.39 -52.49 -0.34 3.12 16 47 H 0.13 2.37 7.64 -52.49 -0.40 1.97 16 48 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 49 H 0.06 0.49 7.45 -51.93 -0.39 0.10 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -33.14 398.49 -9.81 -42.96 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -7.76 Total: 11.36 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -3.54 Total: -3.06 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.36 Total: -44.21 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: 0.15 Total: -27.03 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.14 -9.81 -42.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103434928.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.669 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds