Wall clock time and date at job start Tue Mar 31 2020 04:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47252 * 2 1 4 4 C 1.46754 * 111.00374 * 169.99881 * 3 2 1 5 5 C 1.53426 * 108.74618 * 285.59161 * 4 3 2 6 6 H 1.08993 * 109.77550 * 56.27302 * 5 4 3 7 7 C 1.53004 * 109.77272 * 177.06849 * 5 4 3 8 8 N 1.46899 * 109.46948 * 184.99916 * 7 5 4 9 9 C 1.46909 * 110.99931 * 66.04646 * 8 7 5 10 10 C 1.46905 * 110.99906 * 189.99657 * 8 7 5 11 11 C 1.53001 * 109.46864 * 75.89239 * 10 8 7 12 12 H 1.08993 * 109.46938 * 305.14707 * 11 10 8 13 13 C 1.47202 * 109.46911 * 65.14801 * 11 10 8 14 14 N 8.07315 * 122.21947 * 61.88177 * 2 1 3 15 15 C 1.53002 * 109.46966 * 185.14658 * 11 10 8 16 16 C 1.50698 * 109.47054 * 174.99784 * 15 11 10 17 17 H 1.08001 * 120.00209 * 0.02562 * 16 15 11 18 18 C 1.37874 * 120.00033 * 179.97438 * 16 15 11 19 19 N 1.31511 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00138 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47397 * 59.99505 * 20 18 16 22 22 H 1.48500 * 109.47369 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46737 * 299.99936 * 20 18 16 24 24 O 1.43138 * 107.90318 * 296.66472 * 5 4 3 25 25 C 1.36147 * 116.67713 * 45.34149 * 24 5 4 26 26 C 1.38776 * 118.75126 * 165.02254 * 25 24 5 27 27 C 1.38177 * 120.20424 * 179.78438 * 26 25 24 28 28 C 1.38255 * 120.03090 * 359.97438 * 27 26 25 29 29 C 1.38063 * 120.11471 * 0.11635 * 28 27 26 30 30 C 1.38963 * 121.37629 * 344.97180 * 25 24 5 31 31 H 1.08995 * 109.47087 * 60.00128 * 1 2 3 32 32 H 1.09002 * 109.46775 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46988 * 299.99656 * 1 2 3 34 34 H 1.08999 * 109.47430 * 240.00112 * 2 1 3 35 35 H 1.09002 * 109.47703 * 120.00054 * 2 1 3 36 36 H 1.09005 * 109.61672 * 165.76770 * 4 3 2 37 37 H 1.09003 * 109.61432 * 45.41303 * 4 3 2 38 38 H 1.09000 * 109.46850 * 305.00034 * 7 5 4 39 39 H 1.09000 * 109.47286 * 64.99822 * 7 5 4 40 40 H 1.08998 * 109.46896 * 54.71932 * 9 8 7 41 41 H 1.08999 * 109.46944 * 174.72311 * 9 8 7 42 42 H 1.09000 * 109.46985 * 294.71798 * 9 8 7 43 43 H 1.08996 * 109.46798 * 195.89314 * 10 8 7 44 44 H 1.09001 * 109.47366 * 315.89194 * 10 8 7 45 45 H 1.09002 * 109.47049 * 295.00069 * 15 11 10 46 46 H 1.09002 * 109.46626 * 55.00053 * 15 11 10 47 47 H 0.97002 * 120.00456 * 179.97438 * 19 18 16 48 48 H 1.08000 * 119.89649 * 359.76595 * 26 25 24 49 49 H 1.08004 * 119.98420 * 180.02562 * 27 26 25 50 50 H 1.08001 * 119.94276 * 180.08934 * 28 27 26 51 51 H 1.08002 * 119.87711 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4671 1.4311 0.2379 5 6 3.7327 1.1380 1.7203 6 1 3.2921 0.1786 1.9912 7 6 5.2402 1.1082 1.9800 8 7 5.4895 0.7099 3.3718 9 6 5.0670 -0.6775 3.6061 10 6 6.9024 0.8971 3.7280 11 6 7.1792 2.3853 3.9507 12 1 6.8729 2.9478 3.0688 13 6 6.4201 2.8558 5.1209 14 7 5.8343 3.2189 6.0239 15 6 8.6749 2.5948 4.1953 16 6 8.9662 4.0702 4.2924 17 1 8.1647 4.7868 4.1904 18 6 10.2559 4.5052 4.5126 19 7 11.2319 3.6326 4.6373 20 14 10.6169 6.3339 4.6338 21 1 9.8443 6.9175 5.7597 22 1 12.0687 6.5373 4.8710 23 1 10.2248 7.0009 3.3661 24 8 3.1292 2.1828 2.4905 25 6 1.8647 2.5472 2.1414 26 6 1.1222 3.3140 3.0282 27 6 -0.1627 3.7044 2.7027 28 6 -0.7127 3.3319 1.4902 29 6 0.0188 2.5675 0.6033 30 6 1.3126 2.1682 0.9238 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.8478 2.4211 -0.0133 37 1 3.9632 0.6811 -0.3780 38 1 5.7107 0.3913 1.3071 39 1 5.6587 2.0994 1.8052 40 1 5.5542 -1.3325 2.8839 41 1 5.3477 -0.9772 4.6158 42 1 3.9855 -0.7520 3.4925 43 1 7.1227 0.3458 4.6420 44 1 7.5330 0.5273 2.9196 45 1 8.9630 2.1055 5.1257 46 1 9.2417 2.1662 3.3687 47 1 12.1393 3.9386 4.7918 48 1 1.5498 3.6063 3.9759 49 1 -0.7372 4.3016 3.3954 50 1 -1.7166 3.6390 1.2366 51 1 -0.4145 2.2790 -0.3430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104801723.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:09 Heat of formation + Delta-G solvation = 32.762852 kcal Electronic energy + Delta-G solvation = -30511.412516 eV Core-core repulsion = 26604.442492 eV Total energy + Delta-G solvation = -3906.970025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.47857 -38.52027 -37.37492 -37.02274 -35.60788 -33.59896 -32.26922 -31.59014 -30.91745 -30.52839 -28.35797 -27.47418 -25.87461 -24.59516 -23.64735 -22.86689 -22.55278 -21.70902 -21.16628 -19.92228 -18.16996 -17.06249 -16.91899 -16.50148 -16.24836 -15.87772 -15.55635 -15.17629 -14.96444 -14.77274 -14.48574 -14.38600 -14.22894 -14.00540 -13.55046 -13.25531 -12.93587 -12.79668 -12.68250 -12.48864 -12.38739 -12.27364 -12.07473 -11.90943 -11.87971 -11.71347 -11.64414 -11.46281 -11.25577 -11.17092 -11.04258 -11.00858 -10.76663 -10.62326 -10.51438 -10.13876 -9.54351 -9.47655 -9.22676 -8.44839 -8.43889 -8.25701 -8.06988 -6.08344 -4.11187 1.15956 1.32208 3.10944 3.32713 3.33349 3.36553 3.40995 3.63485 3.75943 3.84236 3.95361 4.36507 4.43572 4.52902 4.58359 4.69894 4.73481 4.83615 4.90995 4.93959 4.99404 5.08007 5.15538 5.19951 5.24488 5.29803 5.30589 5.34427 5.40326 5.46732 5.48765 5.57999 5.64751 5.72262 5.75701 5.81284 5.85783 5.90262 5.98884 6.08799 6.11104 6.36684 6.38180 6.48543 6.51113 6.64668 6.88556 7.07501 7.08350 7.42283 7.42838 7.54165 7.87238 8.25097 8.68009 8.93594 9.54251 11.02566 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.002688 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.694188 B =10412.597205 C =11168.779703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.048 3.952 3 N -0.484 5.484 4 C 0.019 3.981 5 C 0.059 3.941 6 H 0.073 0.927 7 C 0.061 3.939 8 N -0.538 5.538 9 C 0.024 3.976 10 C 0.062 3.938 11 C 0.013 3.987 12 H 0.098 0.902 13 C 0.258 3.742 14 N -0.480 5.480 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 O -0.282 6.282 25 C 0.098 3.902 26 C -0.136 4.136 27 C -0.096 4.096 28 C -0.152 4.152 29 C -0.081 4.081 30 C 0.015 3.985 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.026 0.974 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.036 0.964 47 H 0.263 0.737 48 H 0.131 0.869 49 H 0.126 0.874 50 H 0.123 0.877 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.165 -10.658 -12.464 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.077 4.077 3 N -0.201 5.201 4 C -0.110 4.110 5 C 0.001 3.999 6 H 0.091 0.909 7 C -0.068 4.068 8 N -0.262 5.262 9 C -0.124 4.124 10 C -0.066 4.066 11 C -0.009 4.009 12 H 0.116 0.884 13 C -0.059 4.059 14 N -0.157 5.157 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.200 1.200 24 O -0.195 6.195 25 C 0.050 3.950 26 C -0.155 4.155 27 C -0.114 4.114 28 C -0.171 4.171 29 C -0.100 4.100 30 C -0.081 4.081 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.044 0.956 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.149 0.851 49 H 0.144 0.856 50 H 0.141 0.859 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.072 -9.614 -11.118 26.518 hybrid contribution 1.206 -0.026 -0.209 1.224 sum -20.866 -9.640 -11.327 25.625 Atomic orbital electron populations 1.22228 0.94516 1.02123 1.03037 1.22278 0.96597 0.87506 1.01318 1.59644 1.03439 1.10471 1.46528 1.22980 0.87797 1.05122 0.95075 1.23135 0.95048 0.90060 0.91662 0.90901 1.22182 0.91988 1.02987 0.89651 1.61927 1.20851 1.22185 1.21217 1.22423 1.00473 0.88103 1.01410 1.22280 0.86419 0.96558 1.01358 1.19195 0.97453 0.93466 0.90790 0.88422 1.28765 0.91306 0.91953 0.93864 1.80960 1.12257 1.10157 1.12297 1.19168 0.85242 0.97856 0.98419 1.21109 0.93526 0.91669 1.50037 0.92537 1.24941 0.96301 0.97729 0.94946 1.69925 1.00452 1.33727 1.49055 0.86663 0.77137 0.85514 0.78837 1.20189 1.21207 1.20038 1.86536 1.24769 1.52288 1.55928 1.19167 0.86176 0.97959 0.91674 1.20548 0.94051 1.01114 0.99754 1.20938 0.94322 0.99230 0.96939 1.20912 1.00423 1.00840 0.94910 1.20945 0.92642 0.96765 0.99683 1.18759 0.95639 1.03494 0.90255 0.91472 0.91998 0.91352 0.89859 0.94195 0.88387 0.88377 0.92295 0.88624 0.95577 0.91143 0.92048 0.90152 0.92543 0.95624 0.94550 0.92770 0.85081 0.85558 0.85885 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.46 37.16 0.31 -0.84 16 2 C 0.05 0.39 5.82 -3.82 -0.02 0.36 16 3 N -0.48 -4.87 4.83 -170.69 -0.82 -5.70 16 4 C 0.02 0.18 5.31 -3.68 -0.02 0.16 16 5 C 0.06 0.67 2.77 -26.51 -0.07 0.59 16 6 H 0.07 0.79 4.87 -51.93 -0.25 0.54 16 7 C 0.06 0.69 4.48 -3.82 -0.02 0.67 16 8 N -0.54 -7.19 4.37 -242.91 -1.06 -8.25 16 9 C 0.02 0.26 9.24 60.07 0.56 0.82 16 10 C 0.06 0.91 4.36 -3.82 -0.02 0.90 16 11 C 0.01 0.24 2.27 -93.40 -0.21 0.03 16 12 H 0.10 1.76 6.67 -51.93 -0.35 1.41 16 13 C 0.26 5.60 13.67 -20.76 -0.28 5.32 16 14 N -0.48 -11.32 18.54 42.15 0.78 -10.54 16 15 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 16 C -0.53 -14.11 8.60 -34.44 -0.30 -14.41 16 17 H 0.06 1.52 7.59 -52.49 -0.40 1.13 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 20 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 O -0.28 -4.16 10.03 -20.21 -0.20 -4.36 16 25 C 0.10 1.33 6.47 -39.11 -0.25 1.08 16 26 C -0.14 -1.74 9.94 -39.40 -0.39 -2.14 16 27 C -0.10 -0.99 10.04 -39.60 -0.40 -1.39 16 28 C -0.15 -1.42 10.03 -39.64 -0.40 -1.82 16 29 C -0.08 -0.80 7.00 -39.31 -0.27 -1.08 16 30 C 0.01 0.17 4.66 -83.41 -0.39 -0.22 16 31 H 0.07 0.44 6.90 -51.93 -0.36 0.09 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.58 5.62 -51.93 -0.29 0.28 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.04 0.34 6.45 -51.93 -0.34 0.00 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.10 0.71 8.02 -51.93 -0.42 0.30 16 38 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 39 H 0.10 1.19 6.57 -51.93 -0.34 0.85 16 40 H 0.03 0.24 8.07 -51.93 -0.42 -0.18 16 41 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 42 H 0.06 0.65 6.61 -51.93 -0.34 0.30 16 43 H 0.08 1.19 7.74 -51.93 -0.40 0.79 16 44 H 0.06 0.74 8.00 -51.93 -0.42 0.32 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 49 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 50 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 51 H 0.13 1.07 6.23 -52.49 -0.33 0.75 16 LS Contribution 403.38 15.07 6.08 6.08 Total: -1.00 -32.23 403.38 -9.90 -42.13 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.99 Total: -1.28 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.40 Total: -9.69 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.37 Total: -49.37 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.20 Total: -4.36 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.23 -9.90 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104801723.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.894 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds