Wall clock time and date at job start Tue Mar 31 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38361 * 119.92236 * 2 1 4 4 C 1.38444 * 120.28478 * 179.97438 * 3 2 1 5 5 Cl 1.73600 * 119.94161 * 180.02562 * 4 3 2 6 6 C 1.38105 * 120.11550 * 359.97438 * 4 3 2 7 7 C 1.39543 * 119.83798 * 0.02562 * 6 4 3 8 8 C 1.47851 * 120.13458 * 179.97438 * 7 6 4 9 9 O 1.21545 * 120.00128 * 311.47392 * 8 7 6 10 10 N 1.34777 * 119.99477 * 131.75191 * 8 7 6 11 11 C 1.46498 * 120.00226 * 4.76945 * 10 8 7 12 12 C 1.50706 * 109.47056 * 95.62052 * 11 10 8 13 13 H 1.08001 * 119.99856 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99812 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00071 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99843 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47221 * 89.99849 * 16 14 12 18 18 H 1.48506 * 109.46805 * 209.99508 * 16 14 12 19 19 H 1.48497 * 109.47096 * 329.99498 * 16 14 12 20 20 C 1.46503 * 119.99776 * 184.76786 * 10 8 7 21 21 C 1.50701 * 109.46691 * 90.00032 * 20 10 8 22 22 C 1.38678 * 120.41643 * 269.71867 * 21 20 10 23 23 C 1.38631 * 118.41797 * 179.78775 * 22 21 20 24 24 C 1.38230 * 119.15795 * 0.51327 * 23 22 21 25 25 N 1.31850 * 120.76669 * 359.72932 * 24 23 22 26 26 C 1.31892 * 121.72660 * 359.97438 * 25 24 23 27 27 C 1.37945 * 119.92195 * 180.25451 * 2 1 3 28 28 H 1.09007 * 109.47182 * 90.00230 * 1 2 3 29 29 H 1.09002 * 109.47266 * 210.00352 * 1 2 3 30 30 H 1.08997 * 109.47370 * 330.00207 * 1 2 3 31 31 H 1.08004 * 119.85365 * 359.97438 * 3 2 1 32 32 H 1.08000 * 120.07596 * 180.02562 * 6 4 3 33 33 H 1.09002 * 109.47054 * 215.62009 * 11 10 8 34 34 H 1.09000 * 109.46949 * 335.61979 * 11 10 8 35 35 H 0.97003 * 120.00121 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.47111 * 210.00132 * 20 10 8 37 37 H 1.09002 * 109.46898 * 330.00302 * 20 10 8 38 38 H 1.07997 * 120.79099 * 0.02562 * 22 21 20 39 39 H 1.07990 * 120.42023 * 180.22189 * 23 22 21 40 40 H 1.08004 * 119.61977 * 179.74853 * 24 23 22 41 41 H 1.08001 * 119.61721 * 180.02562 * 26 25 24 42 42 H 1.08000 * 120.05984 * 0.03466 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1992 0.0000 4 6 3.5815 1.2079 0.0005 5 17 4.4385 2.7177 0.0012 6 6 4.2820 0.0177 0.0016 7 6 3.5910 -1.1946 0.0016 8 6 4.3343 -2.4727 0.0022 9 8 5.2427 -2.6477 -0.7861 10 7 4.0008 -3.4457 0.8731 11 6 2.8370 -3.2791 1.7472 12 6 1.6387 -3.9442 1.1204 13 1 1.7343 -4.4409 0.1662 14 6 0.4200 -3.9176 1.7647 15 7 0.3034 -3.3123 2.9265 16 14 -1.0652 -4.7426 0.9882 17 1 -1.1381 -6.1559 1.4382 18 1 -2.3001 -4.0278 1.3999 19 1 -0.9382 -4.6999 -0.4907 20 6 4.8021 -4.6700 0.9456 21 6 5.9041 -4.4898 1.9576 22 6 7.1387 -3.9913 1.5698 23 6 8.1213 -3.8382 2.5357 24 6 7.8431 -4.1951 3.8419 25 7 6.6590 -4.6707 4.1735 26 6 5.6988 -4.8243 3.2824 27 6 2.1951 -1.1956 -0.0053 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6535 2.1324 -0.0004 32 1 5.3620 0.0253 0.0024 33 1 3.0413 -3.7363 2.7153 34 1 2.6335 -2.2169 1.8827 35 1 -0.5539 -3.2939 3.3799 36 1 4.1663 -5.5031 1.2452 37 1 5.2369 -4.8780 -0.0320 38 1 7.3290 -3.7251 0.5406 39 1 9.0932 -3.4495 2.2702 40 1 8.6045 -4.0827 4.5996 41 1 4.7413 -5.2167 3.5918 42 1 1.6548 -2.1307 -0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150971012.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:59 Heat of formation + Delta-G solvation = 13.686543 kcal Electronic energy + Delta-G solvation = -27581.342102 eV Core-core repulsion = 23744.869180 eV Total energy + Delta-G solvation = -3836.472922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.103 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.25196 -39.62136 -38.13373 -36.29303 -35.41434 -33.25931 -32.52037 -32.14803 -31.48844 -30.36061 -27.69655 -26.65730 -26.27604 -23.60797 -23.36508 -22.75343 -21.91181 -21.15460 -18.72863 -17.03139 -16.91073 -16.55362 -16.23982 -15.94350 -15.65068 -15.32889 -14.94564 -14.77121 -14.38134 -13.98899 -13.60926 -13.53483 -13.01940 -12.99384 -12.87238 -12.75328 -12.54234 -12.44406 -12.09926 -11.86233 -11.74684 -11.42061 -11.25207 -11.11180 -11.06091 -10.97347 -10.78005 -10.63210 -10.30890 -9.95808 -9.64915 -9.36692 -9.26563 -8.79994 -8.74383 -8.52003 -8.23046 -7.94022 -6.33841 -4.43071 1.26280 1.28491 1.49235 1.54017 2.27043 3.11620 3.17838 3.20891 3.24728 3.65378 4.01804 4.13813 4.21648 4.64654 4.94934 4.96296 5.03206 5.04589 5.12620 5.21486 5.26500 5.32447 5.55034 5.57503 5.67686 5.72008 5.85153 5.93305 5.97461 6.03313 6.11816 6.16013 6.31791 6.36450 6.45148 6.51677 6.58585 6.76872 6.86306 6.90738 7.07520 7.17938 7.33942 7.59081 7.87193 8.10451 8.16648 8.59994 8.77274 9.23964 10.71418 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.006846 B = 0.005620 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4089.124942 B = 4981.031261 C = 8118.763252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.098 4.098 4 C -0.048 4.048 5 Cl -0.083 7.083 6 C -0.075 4.075 7 C -0.108 4.108 8 C 0.563 3.437 9 O -0.563 6.563 10 N -0.582 5.582 11 C 0.229 3.771 12 C -0.547 4.547 13 H 0.065 0.935 14 C 0.073 3.927 15 N -0.877 5.877 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.270 1.270 20 C 0.160 3.840 21 C -0.147 4.147 22 C -0.058 4.058 23 C -0.181 4.181 24 C 0.091 3.909 25 N -0.489 5.489 26 C 0.116 3.884 27 C -0.062 4.062 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.036 0.964 34 H 0.048 0.952 35 H 0.268 0.732 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.134 4.328 -2.660 7.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.082 4.082 3 C -0.117 4.117 4 C -0.074 4.074 5 Cl -0.054 7.054 6 C -0.094 4.094 7 C -0.111 4.111 8 C 0.351 3.649 9 O -0.444 6.444 10 N -0.311 5.311 11 C 0.110 3.890 12 C -0.585 4.585 13 H 0.083 0.917 14 C -0.133 4.133 15 N -0.514 5.514 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.195 1.195 20 C 0.037 3.963 21 C -0.150 4.150 22 C -0.084 4.084 23 C -0.201 4.201 24 C -0.067 4.067 25 N -0.197 5.197 26 C -0.041 4.041 27 C -0.080 4.080 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.167 0.833 41 H 0.176 0.824 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.356 4.169 -2.010 7.863 hybrid contribution -0.601 0.088 -1.007 1.176 sum 5.755 4.257 -3.017 7.768 Atomic orbital electron populations 1.20782 0.90371 1.03635 1.02096 1.19826 0.96647 0.91954 0.99797 1.21009 0.91717 0.98662 1.00348 1.20558 0.92303 0.86301 1.08265 1.98335 1.77617 1.32173 1.97267 1.20865 1.00066 0.89673 0.98812 1.19779 0.94288 0.92845 1.04169 1.18214 0.82574 0.83643 0.80465 1.90675 1.32300 1.81389 1.40043 1.48157 1.29090 1.15786 1.38059 1.19705 0.81029 0.98947 0.89356 1.21421 0.93570 1.36841 1.06686 0.91672 1.24928 0.98802 0.94843 0.94686 1.69933 1.25795 1.41335 1.14303 0.86623 0.81985 0.79907 0.79879 1.20312 1.20841 1.19511 1.20160 0.90459 0.88276 0.97436 1.21417 0.96242 1.00420 0.96895 1.21661 0.92291 0.94067 1.00406 1.22104 1.00547 1.02781 0.94639 1.22706 0.94203 0.94839 0.94915 1.67711 1.01172 1.13232 1.37629 1.22819 0.97705 0.94925 0.88627 1.22480 0.92919 1.00968 0.91633 0.91384 0.90034 0.91799 0.85345 0.85154 0.94587 0.93399 0.92226 0.88639 0.89543 0.84533 0.85220 0.83261 0.82439 0.80692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 36.00 0.36 -1.25 16 2 C -0.08 -1.35 5.87 -104.69 -0.61 -1.97 16 3 C -0.10 -1.49 9.47 -39.46 -0.37 -1.87 16 4 C -0.05 -0.76 6.31 -39.55 -0.25 -1.01 16 5 Cl -0.08 -1.14 28.95 -51.86 -1.50 -2.64 16 6 C -0.07 -1.30 9.50 -39.14 -0.37 -1.67 16 7 C -0.11 -2.06 4.93 -104.97 -0.52 -2.58 16 8 C 0.56 11.36 7.24 -12.33 -0.09 11.27 16 9 O -0.56 -11.99 16.48 5.33 0.09 -11.91 16 10 N -0.58 -11.40 2.44 -177.54 -0.43 -11.84 16 11 C 0.23 4.98 4.67 -5.19 -0.02 4.96 16 12 C -0.55 -12.55 6.83 -34.44 -0.24 -12.78 16 13 H 0.07 1.52 7.81 -52.49 -0.41 1.11 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.88 -21.87 13.29 55.43 0.74 -21.13 16 16 Si 0.89 18.56 29.54 -169.99 -5.02 13.54 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 C 0.16 2.73 5.62 -5.19 -0.03 2.70 16 21 C -0.15 -2.36 5.48 -104.48 -0.57 -2.93 16 22 C -0.06 -0.86 9.86 -39.27 -0.39 -1.25 16 23 C -0.18 -2.35 10.11 -39.44 -0.40 -2.75 16 24 C 0.09 1.23 11.18 -17.55 -0.20 1.04 16 25 N -0.49 -7.92 10.36 -13.25 -0.14 -8.06 16 26 C 0.12 1.90 10.86 -17.55 -0.19 1.71 16 27 C -0.06 -1.17 7.18 -39.18 -0.28 -1.45 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 30 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 32 H 0.13 2.18 8.06 -52.49 -0.42 1.75 16 33 H 0.04 0.83 8.11 -51.93 -0.42 0.41 16 34 H 0.05 1.12 5.44 -51.93 -0.28 0.83 16 35 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 36 H 0.10 1.56 8.02 -51.93 -0.42 1.14 16 37 H 0.09 1.45 7.31 -51.93 -0.38 1.07 16 38 H 0.14 2.03 7.96 -52.49 -0.42 1.62 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 41 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 42 H 0.18 3.63 4.76 -52.49 -0.25 3.38 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -26.40 375.29 -9.97 -36.37 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.09 Total: 8.23 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -4.27 Total: -8.21 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.17 Total: -41.03 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -26.40 -9.97 -36.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150971012.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.056 kcal (2) G-P(sol) polarization free energy of solvation -26.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds