Wall clock time and date at job start Tue Mar 31 2020 05:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35915 * 117.00350 * 2 1 4 4 C 1.38724 * 120.05690 * 359.97438 * 3 2 1 5 5 C 1.38142 * 119.95298 * 179.97438 * 4 3 2 6 6 C 1.38277 * 120.07437 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.94451 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47421 * 220.00419 * 7 6 5 9 9 Si 1.63106 * 113.99986 * 96.60378 * 8 7 6 10 10 C 1.86298 * 109.47273 * 62.85078 * 9 8 7 11 11 C 1.86296 * 109.47103 * 182.85039 * 9 8 7 12 12 C 1.86299 * 109.47163 * 302.84977 * 9 8 7 13 13 C 1.50700 * 109.47352 * 100.00214 * 7 6 5 14 14 N 1.27944 * 119.99541 * 14.63773 * 13 7 6 15 15 Si 1.86801 * 120.00397 * 194.64159 * 13 7 6 16 16 H 1.48500 * 109.46667 * 5.08163 * 15 13 7 17 17 H 1.48498 * 109.47020 * 125.08189 * 15 13 7 18 18 H 1.48501 * 109.47045 * 245.08506 * 15 13 7 19 19 C 1.38253 * 120.11605 * 0.26266 * 6 5 4 20 20 C 1.38238 * 120.04273 * 359.48541 * 19 6 5 21 21 Br 1.89095 * 120.03285 * 180.23537 * 20 19 6 22 22 H 1.08996 * 109.47386 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47040 * 300.00540 * 1 2 3 24 24 H 1.09000 * 109.46500 * 60.00276 * 1 2 3 25 25 H 1.08004 * 120.02540 * 359.97438 * 4 3 2 26 26 H 1.08006 * 119.96231 * 179.97438 * 5 4 3 27 27 H 1.09007 * 109.47212 * 340.00530 * 7 6 5 28 28 H 1.08999 * 109.46932 * 54.74229 * 10 9 8 29 29 H 1.08997 * 109.47404 * 174.74891 * 10 9 8 30 30 H 1.09007 * 109.47052 * 294.75413 * 10 9 8 31 31 H 1.09001 * 109.47125 * 59.99728 * 11 9 8 32 32 H 1.08993 * 109.47278 * 179.97438 * 11 9 8 33 33 H 1.09004 * 109.47022 * 300.00283 * 11 9 8 34 34 H 1.09000 * 109.47028 * 59.99966 * 12 9 8 35 35 H 1.08993 * 109.47262 * 180.02562 * 12 9 8 36 36 H 1.09001 * 109.46929 * 300.00189 * 12 9 8 37 37 H 0.97004 * 120.00087 * 0.02562 * 14 13 7 38 38 H 1.08000 * 119.97065 * 179.74450 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2918 2.3752 -0.0005 5 6 1.9213 3.6049 0.0000 6 6 3.3022 3.6765 0.0016 7 6 3.9858 5.0194 0.0016 8 8 5.1226 4.9753 -0.8631 9 14 4.8380 5.5497 -2.3629 10 6 4.3825 7.3532 -2.2612 11 6 6.3705 5.3540 -3.4039 12 6 3.4359 4.5977 -3.1367 13 6 4.4319 5.3561 1.4011 14 7 4.4635 4.4451 2.2989 15 14 4.9388 7.1033 1.8251 16 1 4.6977 7.9862 0.6557 17 1 4.1400 7.5837 2.9811 18 1 6.3816 7.1289 2.1755 19 6 4.0568 2.5181 -0.0028 20 6 3.4320 1.2850 0.0019 21 35 4.4645 -0.2992 0.0026 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 0.2132 2.3203 -0.0014 26 1 1.3341 4.5114 -0.0008 27 1 3.2904 5.7812 -0.3511 28 1 5.1617 7.8950 -1.7251 29 1 4.2835 7.7603 -3.2675 30 1 3.4359 7.4596 -1.7314 31 1 6.6371 4.2987 -3.4634 32 1 6.1802 5.7373 -4.4063 33 1 7.1909 5.9109 -2.9512 34 1 2.5393 4.7122 -2.5276 35 1 3.2461 4.9812 -4.1391 36 1 3.7025 3.5425 -3.1962 37 1 4.2006 3.5377 2.0787 38 1 5.1352 2.5767 -0.0057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169925876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:01 Heat of formation + Delta-G solvation = -70.310373 kcal Electronic energy + Delta-G solvation = -20904.407127 eV Core-core repulsion = 17723.980082 eV Total energy + Delta-G solvation = -3180.427045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 345.031 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.63588 -39.95118 -37.69118 -35.79122 -33.55486 -31.62864 -30.45726 -29.62092 -29.05350 -28.53918 -28.37305 -27.03748 -23.72912 -23.30300 -21.18103 -19.35362 -18.42863 -17.68814 -17.35895 -17.03536 -16.88988 -15.84920 -15.73650 -15.02675 -14.62654 -14.44691 -14.39857 -14.11224 -13.97343 -13.80726 -13.80286 -13.48546 -13.32900 -13.14853 -13.12472 -13.10083 -12.85362 -12.33834 -12.29366 -12.11712 -12.03679 -11.83721 -11.76118 -11.45053 -11.10396 -10.81370 -10.57236 -10.13890 -9.95822 -9.32115 -0.10060 0.03352 0.67199 0.70833 1.20732 1.46166 1.56965 1.78466 1.90172 1.95575 1.97889 2.05129 2.33932 2.42973 3.44919 3.53507 3.69624 3.76334 3.83114 4.02483 4.07504 4.11496 4.25867 4.44696 4.54110 4.62570 4.66245 4.68715 4.69846 4.71081 4.72021 4.73719 4.89439 4.93173 4.98474 5.31336 5.41767 5.44156 5.51107 5.55876 6.07204 6.86000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.301 6.301 3 C 0.166 3.834 4 C -0.203 4.203 5 C -0.048 4.048 6 C -0.164 4.164 7 C 0.141 3.859 8 O -0.608 6.608 9 Si 1.248 2.752 10 C -0.511 4.511 11 C -0.466 4.466 12 C -0.504 4.504 13 C -0.029 4.029 14 N -0.606 5.606 15 Si 1.058 2.942 16 H -0.242 1.242 17 H -0.246 1.246 18 H -0.241 1.241 19 C -0.028 4.028 20 C -0.130 4.130 21 Br -0.029 7.029 22 H 0.106 0.894 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.141 0.859 26 H 0.136 0.864 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.329 0.671 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.674 3.114 -1.732 5.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.213 6.213 3 C 0.117 3.883 4 C -0.222 4.222 5 C -0.066 4.066 6 C -0.166 4.166 7 C 0.082 3.918 8 O -0.565 6.565 9 Si 1.386 2.614 10 C -0.613 4.613 11 C -0.572 4.572 12 C -0.606 4.606 13 C -0.275 4.275 14 N -0.222 5.222 15 Si 0.871 3.129 16 H -0.165 1.165 17 H -0.170 1.170 18 H -0.164 1.164 19 C -0.048 4.048 20 C -0.210 4.210 21 Br 0.056 6.944 22 H 0.125 0.875 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.159 0.841 26 H 0.154 0.846 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.547 2.942 -0.339 3.906 hybrid contribution -1.371 -0.716 -1.606 2.229 sum -3.918 2.227 -1.945 4.908 Atomic orbital electron populations 1.23202 0.77445 1.04824 1.01690 1.86223 1.22015 1.25633 1.87414 1.18726 0.90799 0.85322 0.93447 1.21237 1.00595 0.91479 1.08931 1.20961 0.93425 0.97831 0.94411 1.20090 0.93750 0.95379 1.07346 1.20578 0.86303 0.92997 0.91950 1.85445 1.42156 1.86132 1.42753 0.77374 0.65685 0.63600 0.54780 1.27024 1.05822 1.23510 1.04988 1.26285 1.16005 1.05349 1.09590 1.26979 1.15592 1.09886 1.08162 1.31952 0.94844 1.09968 0.90734 1.69294 1.08998 1.06717 1.37207 0.83713 0.81467 0.67284 0.80483 1.16470 1.16973 1.16407 1.20902 1.01144 0.88971 0.93770 1.21113 0.91388 0.93713 1.14771 1.96772 1.68922 1.30939 1.97736 0.87519 0.92157 0.92188 0.84106 0.84580 0.89612 0.90556 0.90522 0.91297 0.90749 0.90470 0.90615 0.91477 0.90925 0.91078 0.85006 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 101.05 0.99 0.94 16 2 O -0.30 -0.48 9.83 -19.47 -0.19 -0.67 16 3 C 0.17 0.26 6.68 -39.20 -0.26 0.00 16 4 C -0.20 0.10 9.04 -39.44 -0.36 -0.26 16 5 C -0.05 0.05 9.35 -39.60 -0.37 -0.32 16 6 C -0.16 -0.01 3.06 -104.60 -0.32 -0.33 16 7 C 0.14 -0.09 1.73 -29.04 -0.05 -0.14 16 8 O -0.61 0.22 7.44 -35.23 -0.26 -0.04 16 9 Si 1.25 -2.43 12.60 -169.99 -2.14 -4.57 16 10 C -0.51 0.97 8.60 101.05 0.87 1.84 16 11 C -0.47 0.51 8.65 101.05 0.87 1.39 16 12 C -0.50 0.56 8.20 101.05 0.83 1.39 16 13 C -0.03 -0.01 5.29 -13.90 -0.07 -0.09 16 14 N -0.61 -1.35 13.35 56.23 0.75 -0.60 16 15 Si 1.06 -0.81 29.96 -169.99 -5.09 -5.90 16 16 H -0.24 0.54 7.11 56.52 0.40 0.94 16 17 H -0.25 0.06 7.11 56.52 0.40 0.47 16 18 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 19 C -0.03 -0.04 7.60 -39.58 -0.30 -0.34 16 20 C -0.13 -0.29 6.24 -39.38 -0.25 -0.54 16 21 Br -0.03 -0.08 33.16 -68.01 -2.26 -2.34 16 22 H 0.11 -0.36 8.14 -51.93 -0.42 -0.78 16 23 H 0.06 -0.19 7.66 -51.93 -0.40 -0.59 16 24 H 0.06 -0.19 7.66 -51.93 -0.40 -0.59 16 25 H 0.14 -0.38 6.30 -52.48 -0.33 -0.71 16 26 H 0.14 -0.49 8.03 -52.48 -0.42 -0.92 16 27 H 0.09 -0.29 6.07 -51.93 -0.32 -0.61 16 28 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 29 H 0.08 -0.16 7.96 -51.93 -0.41 -0.58 16 30 H 0.07 -0.18 7.39 -51.93 -0.38 -0.56 16 31 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 32 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 34 H 0.07 -0.09 7.41 -51.93 -0.39 -0.48 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 36 H 0.07 0.01 7.96 -51.93 -0.41 -0.41 16 37 H 0.33 0.70 5.87 -40.82 -0.24 0.46 16 38 H 0.15 0.19 7.77 -52.49 -0.41 -0.22 16 LS Contribution 339.94 15.07 5.12 5.12 Total: 0.00 -4.36 339.94 -7.88 -12.23 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: -5.39 Total: -6.78 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 1.59 Total: 3.54 kcal Atomic # 7 Polarization: -1.35 SS G_CDS: 0.75 Total: -0.60 kcal Atomic # 8 Polarization: -0.26 SS G_CDS: -0.45 Total: -0.71 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: -7.23 Total: -10.47 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.26 Total: -2.34 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -4.36 -7.88 -12.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169925876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.076 kcal (2) G-P(sol) polarization free energy of solvation -4.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds