Wall clock time and date at job start Tue Mar 31 2020 06:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46870 * 2 1 4 4 O 1.45202 * 109.46952 * 119.99314 * 2 1 3 5 5 C 1.34232 * 117.00388 * 270.00625 * 4 2 1 6 6 O 1.20823 * 119.99730 * 359.97438 * 5 4 2 7 7 C 1.50692 * 120.00282 * 180.02562 * 5 4 2 8 8 F 1.39901 * 109.47169 * 179.97438 * 7 5 4 9 9 F 1.39902 * 109.47033 * 299.99137 * 7 5 4 10 10 F 1.39902 * 109.47599 * 59.98959 * 7 5 4 11 11 C 1.50695 * 109.47542 * 239.99317 * 2 1 3 12 12 O 1.21291 * 120.00122 * 258.44841 * 11 2 1 13 13 N 1.34781 * 119.99575 * 78.16643 * 11 2 1 14 14 C 1.46487 * 120.00249 * 354.00360 * 13 11 2 15 15 C 1.50700 * 109.47368 * 95.96700 * 14 13 11 16 16 H 1.07995 * 119.99964 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00436 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99482 * 359.97438 * 17 15 14 19 19 Si 1.86790 * 120.00154 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47561 * 59.99643 * 19 17 15 21 21 H 1.48502 * 109.47166 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47368 * 299.99931 * 19 17 15 23 23 C 1.39926 * 119.99331 * 174.00132 * 13 11 2 24 24 C 1.38877 * 120.06562 * 171.54803 * 23 13 11 25 25 C 1.38117 * 119.92618 * 179.78873 * 24 23 13 26 26 C 1.38277 * 120.07077 * 0.49020 * 25 24 23 27 27 C 1.38283 * 120.14371 * 359.74084 * 26 25 24 28 28 C 1.38115 * 120.06797 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47436 * 186.14564 * 1 2 3 30 30 H 1.09002 * 109.47516 * 306.14871 * 1 2 3 31 31 H 1.09003 * 109.46864 * 66.14504 * 1 2 3 32 32 H 1.09004 * 109.47324 * 215.96320 * 14 13 11 33 33 H 1.08999 * 109.47380 * 335.96807 * 14 13 11 34 34 H 0.96996 * 119.99738 * 179.97438 * 18 17 15 35 35 H 1.08000 * 120.03691 * 0.02729 * 24 23 13 36 36 H 1.07999 * 119.96014 * 180.23121 * 25 24 23 37 37 H 1.08004 * 119.92885 * 179.72157 * 26 25 24 38 38 H 1.07997 * 119.96859 * 180.02562 * 27 26 25 39 39 H 1.07996 * 120.03475 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 2.2170 0.0642 2.2812 6 8 1.9980 1.2520 2.2504 7 6 2.7191 -0.5767 3.5493 8 9 2.8516 0.3983 4.5438 9 9 1.8093 -1.5524 3.9706 10 9 3.9629 -1.1710 3.3107 11 6 2.0324 -0.7105 -1.2303 12 8 2.4329 -1.8526 -1.1500 13 7 2.0314 -0.0788 -2.4209 14 6 1.4223 1.2476 -2.5458 15 6 2.4886 2.3044 -2.4151 16 1 3.5171 2.0168 -2.2547 17 6 2.1511 3.6386 -2.4994 18 7 0.8985 3.9889 -2.6944 19 14 3.4730 4.9485 -2.3382 20 1 4.4843 4.7659 -3.4101 21 1 2.8553 6.2931 -2.4635 22 1 4.1303 4.8279 -1.0120 23 6 2.6122 -0.6900 -3.5376 24 6 2.4602 -0.1257 -4.7974 25 6 3.0384 -0.7291 -5.8970 26 6 3.7595 -1.8992 -5.7460 27 6 3.9088 -2.4662 -4.4937 28 6 3.3371 -1.8652 -3.3893 29 1 -0.3634 -1.0217 0.1100 30 1 -0.3634 0.6062 0.8298 31 1 -0.3633 0.4156 -0.9399 32 1 0.9406 1.3360 -3.5196 33 1 0.6795 1.3819 -1.7595 34 1 0.6610 4.9275 -2.7533 35 1 1.8936 0.7860 -4.9165 36 1 2.9236 -0.2887 -6.8764 37 1 4.2069 -2.3715 -6.6082 38 1 4.4729 -3.3799 -4.3789 39 1 3.4536 -2.3087 -2.4116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170616574.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:09 Heat of formation + Delta-G solvation = -212.797938 kcal Electronic energy + Delta-G solvation = -31025.820597 eV Core-core repulsion = 26099.242004 eV Total energy + Delta-G solvation = -4926.578593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.60541 -48.13165 -48.09085 -41.16739 -40.18816 -38.05229 -36.86031 -35.53776 -32.84288 -32.32155 -30.41827 -29.32781 -28.44425 -27.50335 -24.87542 -23.51951 -22.86126 -21.92919 -21.20333 -19.63764 -19.53770 -19.08156 -18.75483 -17.38478 -16.97924 -16.77254 -16.56486 -16.26942 -15.78110 -15.03636 -14.93590 -14.84059 -14.72494 -14.48842 -14.47297 -14.19577 -14.17935 -14.03320 -13.86855 -13.46405 -13.28214 -13.04075 -12.91085 -12.48875 -12.43076 -12.14596 -11.86388 -11.46683 -11.29413 -11.21998 -11.12466 -10.96697 -10.79944 -10.65042 -10.36945 -10.23659 -9.33445 -8.97920 -8.71860 -8.42960 -7.35624 -6.37573 -4.47187 1.13493 1.24307 1.71826 1.91325 2.63624 2.90203 3.15684 3.17112 3.21883 3.25954 3.52228 3.78963 4.01200 4.19098 4.37809 4.55557 4.92662 4.96042 5.16232 5.37990 5.40740 5.47733 5.61444 5.67368 5.91380 5.94314 5.97831 6.06500 6.10522 6.39947 6.62050 6.70602 6.86072 6.92440 6.96415 7.03251 7.12929 7.54201 7.64304 7.74591 7.86275 8.37792 8.60827 9.22299 10.68841 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.008988 B = 0.004489 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.453148 B = 6236.621318 C = 8294.624511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.072 3.928 3 H 0.138 0.862 4 O -0.306 6.306 5 C 0.425 3.575 6 O -0.429 6.429 7 C 0.492 3.508 8 F -0.146 7.146 9 F -0.155 7.155 10 F -0.153 7.153 11 C 0.522 3.478 12 O -0.519 6.519 13 N -0.527 5.527 14 C 0.215 3.785 15 C -0.549 4.549 16 H 0.064 0.936 17 C 0.073 3.927 18 N -0.886 5.886 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.171 3.829 24 C -0.139 4.139 25 C -0.104 4.104 26 C -0.157 4.157 27 C -0.107 4.107 28 C -0.171 4.171 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.270 0.730 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.427 -8.707 5.276 10.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 H 0.155 0.845 4 O -0.221 6.221 5 C 0.259 3.741 6 O -0.312 6.312 7 C 0.436 3.564 8 F -0.127 7.127 9 F -0.137 7.137 10 F -0.135 7.135 11 C 0.310 3.690 12 O -0.397 6.397 13 N -0.247 5.247 14 C 0.097 3.903 15 C -0.587 4.587 16 H 0.082 0.918 17 C -0.132 4.132 18 N -0.523 5.523 19 Si 0.725 3.275 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.198 1.198 23 C 0.076 3.924 24 C -0.160 4.160 25 C -0.123 4.123 26 C -0.177 4.177 27 C -0.126 4.126 28 C -0.191 4.191 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.154 0.846 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.370 -8.706 5.343 10.222 hybrid contribution 0.750 1.087 0.151 1.329 sum 1.120 -7.619 5.494 9.460 Atomic orbital electron populations 1.22301 0.90911 1.03854 1.05578 1.22906 0.96801 0.98811 0.79968 0.84494 1.86550 1.75557 1.40803 1.19182 1.23185 0.78068 0.86684 0.86129 1.90891 1.43304 1.14494 1.82466 1.18879 0.76856 0.76970 0.83721 1.93311 1.95530 1.62311 1.61531 1.93304 1.66486 1.63027 1.90857 1.93321 1.42043 1.83888 1.94217 1.19883 0.78972 0.85955 0.84144 1.90417 1.46748 1.17374 1.85182 1.45837 1.52845 1.20039 1.06024 1.20020 0.94554 0.75598 1.00177 1.21300 0.94417 0.90500 1.52512 0.91824 1.24890 0.95768 0.98511 0.94048 1.69880 1.16625 1.18207 1.47567 0.86521 0.81550 0.80243 0.79151 1.19865 1.20864 1.19847 1.17944 0.94626 0.93194 0.86602 1.21048 1.02692 1.01552 0.90677 1.20868 0.97798 0.95601 0.97986 1.21000 1.02155 0.97270 0.97228 1.20998 0.99467 0.99579 0.92525 1.22374 0.98454 0.96132 1.02103 0.90747 0.90442 0.88130 0.93048 0.92744 0.92063 0.84585 0.86331 0.86970 0.86598 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.15 37.16 0.34 -2.16 16 2 C 0.07 1.27 2.14 -27.89 -0.06 1.21 16 3 H 0.14 2.66 6.24 -51.93 -0.32 2.34 16 4 O -0.31 -5.05 9.48 -45.70 -0.43 -5.48 16 5 C 0.43 6.45 7.46 36.00 0.27 6.72 16 6 O -0.43 -7.42 15.83 -18.75 -0.30 -7.72 16 7 C 0.49 6.16 3.54 36.00 0.13 6.29 16 8 F -0.15 -1.79 16.92 2.25 0.04 -1.76 16 9 F -0.16 -1.81 17.30 2.25 0.04 -1.77 16 10 F -0.15 -1.94 17.30 2.25 0.04 -1.90 16 11 C 0.52 10.25 6.86 -10.99 -0.08 10.17 16 12 O -0.52 -10.68 13.13 -13.35 -0.18 -10.86 16 13 N -0.53 -10.73 2.69 -114.74 -0.31 -11.04 16 14 C 0.21 4.68 4.20 -5.20 -0.02 4.66 16 15 C -0.55 -13.50 9.06 -34.44 -0.31 -13.81 16 16 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 17 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 18 N -0.89 -22.87 13.29 55.43 0.74 -22.13 16 19 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 C 0.17 3.40 6.45 -83.69 -0.54 2.86 16 24 C -0.14 -2.59 9.27 -39.39 -0.36 -2.96 16 25 C -0.10 -1.65 10.04 -39.61 -0.40 -2.05 16 26 C -0.16 -2.35 10.04 -39.55 -0.40 -2.74 16 27 C -0.11 -1.70 10.04 -39.61 -0.40 -2.10 16 28 C -0.17 -3.20 8.96 -39.39 -0.35 -3.55 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.53 5.92 -51.93 -0.31 1.22 16 32 H 0.05 1.16 6.23 -51.93 -0.32 0.84 16 33 H 0.05 1.16 4.36 -51.93 -0.23 0.94 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.14 2.63 6.13 -52.49 -0.32 2.31 16 36 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 38 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.17 3.30 4.76 -54.97 -0.26 3.04 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -26.91 349.68 -5.82 -32.73 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.42 Total: 5.35 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -2.28 Total: 4.27 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.43 Total: -33.17 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.91 Total: -24.05 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.12 Total: -5.42 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.91 -5.82 -32.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170616574.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.067 kcal (2) G-P(sol) polarization free energy of solvation -26.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds