Wall clock time and date at job start Tue Mar 31 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46800 * 2 1 4 4 C 1.53006 * 109.47016 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47159 * 180.02562 * 4 3 2 6 6 C 1.34771 * 119.99782 * 180.02562 * 5 4 3 7 7 O 1.21677 * 120.00496 * 5.12509 * 6 5 4 8 8 C 1.46817 * 119.99889 * 185.12605 * 6 5 4 9 9 C 1.39680 * 120.47724 * 75.43224 * 8 6 5 10 10 O 1.34938 * 120.86486 * 359.95741 * 9 8 6 11 11 C 1.46656 * 118.27495 * 179.97438 * 9 8 6 12 12 C 1.39971 * 120.58857 * 180.02562 * 11 9 8 13 13 C 1.36586 * 119.82058 * 179.25229 * 12 11 9 14 14 C 1.38804 * 120.49422 * 0.73696 * 13 12 11 15 15 C 1.37784 * 120.65737 * 359.49378 * 14 13 12 16 16 C 1.39251 * 119.89796 * 0.02562 * 15 14 13 17 17 N 1.37974 * 120.22636 * 180.02562 * 16 15 14 18 18 C 1.46499 * 119.13283 * 0.02562 * 17 16 15 19 19 C 1.50699 * 109.47289 * 269.72866 * 18 17 16 20 20 H 1.07999 * 120.00137 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00121 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00044 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47171 * 59.99831 * 23 21 19 25 25 H 1.48503 * 109.47219 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46816 * 299.99976 * 23 21 19 27 27 C 1.34375 * 121.72835 * 179.74184 * 17 16 15 28 28 O 1.21822 * 119.55441 * 180.28014 * 27 17 16 29 29 H 1.08999 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46863 * 299.99749 * 1 2 3 31 31 H 1.08994 * 109.47367 * 59.99834 * 1 2 3 32 32 H 1.08998 * 109.46815 * 240.00410 * 2 1 3 33 33 H 1.08994 * 109.47367 * 120.00166 * 2 1 3 34 34 H 1.08995 * 109.47421 * 60.00175 * 3 2 1 35 35 H 1.09004 * 109.47376 * 300.00180 * 3 2 1 36 36 H 1.08998 * 109.46963 * 60.00187 * 4 3 2 37 37 H 1.08994 * 109.47003 * 300.00076 * 4 3 2 38 38 H 0.96999 * 119.99787 * 359.97438 * 5 4 3 39 39 H 0.96699 * 113.99889 * 5.17118 * 10 9 8 40 40 H 1.07997 * 120.08494 * 359.97438 * 12 11 9 41 41 H 1.08009 * 119.74840 * 180.23038 * 13 12 11 42 42 H 1.07995 * 119.67171 * 179.51581 * 14 13 12 43 43 H 1.07997 * 120.05105 * 179.97438 * 15 14 13 44 44 H 1.09002 * 109.47014 * 149.73185 * 18 17 16 45 45 H 1.08998 * 109.47130 * 29.73214 * 18 17 16 46 46 H 0.96993 * 119.99787 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3834 3.0700 -0.0010 7 8 6.1733 2.1495 -0.0964 8 6 5.8738 4.4492 0.1133 9 6 5.8451 5.1118 1.3426 10 8 5.3671 4.5013 2.4470 11 6 6.3475 6.4883 1.4017 12 6 6.3419 7.1973 2.6085 13 6 6.8277 8.4732 2.6490 14 6 7.3136 9.0787 1.4983 15 6 7.3242 8.4010 0.2987 16 6 6.8433 7.0958 0.2346 17 7 6.8512 6.4107 -0.9630 18 6 7.3716 7.0744 -2.1609 19 6 6.2488 7.7903 -2.8664 20 1 5.2477 7.7549 -2.4627 21 6 6.4994 8.4905 -4.0274 22 7 7.7186 8.5341 -4.5188 23 14 5.1078 9.3785 -4.9015 24 1 4.5185 10.3928 -3.9909 25 1 5.6353 10.0512 -6.1158 26 1 4.0633 8.3980 -5.2924 27 6 6.3994 5.1488 -1.0583 28 8 6.4296 4.5794 -2.1348 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.9330 0.9289 -0.8909 37 1 3.9337 0.9286 0.8891 38 1 3.4280 3.5610 0.0003 39 1 5.1356 3.5720 2.3137 40 1 5.9651 6.7327 3.5077 41 1 6.8262 9.0180 3.5816 42 1 7.6874 10.0909 1.5439 43 1 7.7041 8.8817 -0.5906 44 1 7.8048 6.3302 -2.8294 45 1 8.1378 7.7944 -1.8735 46 1 7.8948 9.0264 -5.3357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170624744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:48 Heat of formation + Delta-G solvation = -83.561917 kcal Electronic energy + Delta-G solvation = -30088.530594 eV Core-core repulsion = 25942.964593 eV Total energy + Delta-G solvation = -4145.566002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.06891 -39.53772 -38.51835 -37.83613 -36.28610 -35.17537 -33.79652 -33.33855 -32.25751 -30.42401 -29.57527 -28.74251 -27.49664 -24.90587 -23.82100 -23.20855 -22.65675 -21.59480 -21.19539 -20.66803 -18.91014 -18.51699 -17.96559 -16.79223 -16.21182 -16.07909 -16.03645 -15.75415 -15.21205 -14.91282 -14.56168 -14.51661 -14.26132 -14.05376 -13.99876 -13.92998 -13.83819 -13.35551 -13.10698 -12.80518 -12.64102 -12.61761 -12.33391 -11.79580 -11.54051 -11.49981 -11.43740 -11.42978 -11.20171 -10.95968 -10.94036 -10.65258 -10.43539 -10.25120 -9.98887 -9.58035 -9.37924 -9.26513 -9.12863 -8.58146 -8.18280 -7.47112 -6.20493 -4.27090 0.59585 1.51064 2.01386 2.50606 3.09977 3.24478 3.25168 3.29468 3.32410 3.50464 3.56906 4.20815 4.34973 4.52364 4.55990 4.62581 4.76620 4.78107 4.98368 5.05925 5.07790 5.15001 5.17068 5.26476 5.35505 5.46161 5.47543 5.56755 5.60559 5.63850 5.70763 5.78947 5.86819 5.94372 6.00506 6.04165 6.32215 6.36729 6.45737 6.60791 6.78594 6.95788 7.07175 7.14417 7.23206 7.43828 7.73587 7.93882 7.98805 8.23102 8.65638 8.77861 9.38167 10.87795 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008715 B = 0.003674 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.216144 B = 7618.404626 C = 9582.135063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.133 4.133 4 C 0.117 3.883 5 N -0.729 5.729 6 C 0.588 3.412 7 O -0.521 6.521 8 C -0.356 4.356 9 C 0.265 3.735 10 O -0.453 6.453 11 C -0.153 4.153 12 C -0.044 4.044 13 C -0.171 4.171 14 C -0.058 4.058 15 C -0.153 4.153 16 C 0.238 3.762 17 N -0.503 5.503 18 C 0.225 3.775 19 C -0.533 4.533 20 H 0.060 0.940 21 C 0.067 3.933 22 N -0.889 5.889 23 Si 0.903 3.097 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.275 1.275 27 C 0.565 3.435 28 O -0.516 6.516 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.403 0.597 39 H 0.403 0.597 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.154 0.846 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 -6.433 16.721 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.171 4.171 4 C -0.007 4.007 5 N -0.383 5.383 6 C 0.374 3.626 7 O -0.396 6.396 8 C -0.364 4.364 9 C 0.211 3.789 10 O -0.255 6.255 11 C -0.157 4.157 12 C -0.062 4.062 13 C -0.191 4.191 14 C -0.077 4.077 15 C -0.174 4.174 16 C 0.132 3.868 17 N -0.216 5.216 18 C 0.108 3.892 19 C -0.571 4.571 20 H 0.079 0.921 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.730 3.270 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.200 1.200 27 C 0.359 3.641 28 O -0.394 6.394 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.238 0.762 39 H 0.257 0.743 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.172 0.828 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.557 -6.922 16.034 19.448 hybrid contribution -1.214 0.263 -0.819 1.488 sum -9.771 -6.658 15.215 19.269 Atomic orbital electron populations 1.21768 0.95543 1.01721 1.01957 1.21430 0.96066 0.95903 1.02541 1.21846 0.94088 0.98098 1.03062 1.21412 0.93756 0.82902 1.02600 1.46148 1.06946 1.09030 1.76132 1.17373 0.81972 0.87404 0.75839 1.90802 1.55560 1.45798 1.47455 1.21793 1.22222 0.97752 0.94654 1.20374 0.84945 0.90053 0.83491 1.84588 1.77585 1.29999 1.33302 1.17766 1.11910 0.91417 0.94642 1.20719 0.95818 0.94062 0.95601 1.20684 1.03885 0.95719 0.98772 1.21201 0.95383 0.99440 0.91717 1.21225 1.03526 0.92586 1.00032 1.17954 0.92287 0.92086 0.84468 1.45899 1.53337 1.12688 1.09677 1.19861 0.95715 0.93608 0.80024 1.21179 0.94720 1.31955 1.09266 0.92147 1.24895 0.96024 0.96196 0.96514 1.69912 1.19508 1.41578 1.21717 0.86477 0.81949 0.79644 0.78965 1.19981 1.20970 1.20048 1.16988 0.78763 0.80604 0.87792 1.90892 1.55267 1.64932 1.28325 0.92650 0.92707 0.92593 0.91558 0.91690 0.91206 0.91007 0.91197 0.91472 0.76226 0.74263 0.85051 0.85737 0.85275 0.82849 0.92224 0.93178 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.84 5.93 -26.73 -0.16 -1.00 16 3 C -0.13 -1.04 5.33 -26.73 -0.14 -1.18 16 4 C 0.12 1.24 5.68 -4.04 -0.02 1.21 16 5 N -0.73 -9.38 5.50 -61.58 -0.34 -9.72 16 6 C 0.59 10.28 5.45 -12.79 -0.07 10.21 16 7 O -0.52 -10.87 17.12 5.21 0.09 -10.78 16 8 C -0.36 -6.62 5.80 -102.68 -0.60 -7.22 16 9 C 0.26 4.07 7.13 -35.65 -0.25 3.82 16 10 O -0.45 -5.28 12.91 -16.53 -0.21 -5.50 16 11 C -0.15 -2.45 5.88 -104.96 -0.62 -3.07 16 12 C -0.04 -0.55 9.60 -39.53 -0.38 -0.93 16 13 C -0.17 -1.98 9.97 -39.97 -0.40 -2.38 16 14 C -0.06 -0.75 10.01 -39.54 -0.40 -1.15 16 15 C -0.15 -2.58 9.16 -39.37 -0.36 -2.94 16 16 C 0.24 4.46 6.53 -83.83 -0.55 3.92 16 17 N -0.50 -11.32 2.62 -116.37 -0.30 -11.63 16 18 C 0.23 5.76 4.51 -5.19 -0.02 5.74 16 19 C -0.53 -14.56 9.38 -34.44 -0.32 -14.89 16 20 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 21 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 22 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 23 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.56 13.19 7.57 -13.23 -0.10 13.09 16 28 O -0.52 -14.16 16.05 5.08 0.08 -14.08 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 4.48 8.46 -40.82 -0.35 4.14 16 39 H 0.40 3.73 7.42 45.56 0.34 4.06 16 40 H 0.13 1.37 7.68 -52.49 -0.40 0.97 16 41 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.15 2.80 6.06 -52.49 -0.32 2.48 16 44 H 0.06 1.73 7.33 -51.93 -0.38 1.35 16 45 H 0.05 1.24 6.07 -51.93 -0.31 0.92 16 46 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -34.89 390.18 -8.83 -43.71 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.62 Total: 6.16 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -4.12 Total: 4.38 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.09 Total: -45.90 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.04 Total: -30.36 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.89 -8.83 -43.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170624744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.847 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds