Wall clock time and date at job start Tue Mar 31 2020 06:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86802 * 119.99744 * 2 1 4 4 H 1.48498 * 109.46930 * 274.98264 * 3 2 1 5 5 H 1.48502 * 109.47068 * 34.98670 * 3 2 1 6 6 H 1.48499 * 109.46899 * 154.98412 * 3 2 1 7 7 C 1.39905 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99785 * 147.61802 * 7 2 1 9 9 C 1.41154 * 119.99893 * 327.61801 * 7 2 1 10 10 C 1.40875 * 120.15986 * 157.95041 * 9 7 2 11 11 C 1.36378 * 119.82594 * 180.02562 * 10 9 7 12 12 C 1.39482 * 120.16524 * 0.02562 * 11 10 9 13 13 N 1.39246 * 119.82870 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99847 * 37.75884 * 13 12 11 15 15 O 1.21281 * 120.00379 * 356.70098 * 14 13 12 16 16 C 1.50704 * 119.99577 * 176.70180 * 14 13 12 17 17 S 1.81399 * 109.47020 * 179.97438 * 16 14 13 18 18 C 1.81399 * 103.00379 * 179.97438 * 17 16 14 19 19 C 1.50693 * 109.47685 * 180.02562 * 18 17 16 20 20 C 1.38215 * 120.01089 * 89.99893 * 19 18 17 21 21 C 1.38230 * 120.02288 * 179.72739 * 20 19 18 22 22 C 1.38270 * 120.05284 * 0.29567 * 21 20 19 23 23 C 1.38172 * 120.02400 * 359.97438 * 22 21 20 24 24 C 1.38438 * 120.01423 * 270.29639 * 19 18 17 25 25 F 1.35108 * 120.02787 * 0.02562 * 24 19 18 26 26 C 1.39480 * 120.33746 * 0.25007 * 12 11 10 27 27 C 1.36378 * 120.16670 * 359.48708 * 26 12 11 28 28 H 0.96995 * 120.00226 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.08740 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.91334 * 179.97438 * 11 10 9 31 31 H 0.97000 * 119.99654 * 217.76323 * 13 12 11 32 32 H 1.09002 * 109.47221 * 59.99838 * 16 14 13 33 33 H 1.08994 * 109.47372 * 299.99917 * 16 14 13 34 34 H 1.09003 * 109.46821 * 59.99792 * 18 17 16 35 35 H 1.09003 * 109.46866 * 300.00609 * 18 17 16 36 36 H 1.08000 * 119.99168 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.97097 * 180.27831 * 21 20 19 38 38 H 1.07999 * 119.98633 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.01533 * 180.02562 * 23 22 21 40 40 H 1.08003 * 119.91406 * 179.74551 * 26 12 11 41 41 H 1.08000 * 120.08405 * 180.25366 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3848 2.1072 -1.3948 5 1 1.4967 2.6200 0.8028 6 1 3.5889 1.4121 0.5921 7 6 2.0082 -1.2116 0.0005 8 1 2.9623 -1.2845 -0.5003 9 6 1.4671 -2.3387 0.6557 10 6 1.8853 -3.6350 0.2961 11 6 1.3576 -4.7191 0.9333 12 6 0.4058 -4.5469 1.9382 13 7 -0.1288 -5.6588 2.5838 14 6 0.6564 -6.7180 2.8631 15 8 1.8134 -6.7279 2.4995 16 6 0.0967 -7.8901 3.6274 17 16 1.3891 -9.1447 3.8420 18 6 0.5387 -10.4525 4.7678 19 6 1.4959 -11.5864 5.0299 20 6 2.2635 -11.5916 6.1793 21 6 3.1375 -12.6344 6.4226 22 6 3.2496 -13.6704 5.5138 23 6 2.4873 -13.6646 4.3614 24 6 1.6114 -12.6203 4.1165 25 9 0.8664 -12.6131 2.9894 26 6 -0.0175 -3.2669 2.2958 27 6 0.5051 -2.1729 1.6713 28 1 -0.4850 0.8400 -0.0004 29 1 2.6220 -3.7698 -0.4821 30 1 1.6769 -5.7135 0.6585 31 1 -1.0663 -5.6711 2.8323 32 1 -0.7380 -8.3198 3.0736 33 1 -0.2502 -7.5544 4.6047 34 1 -0.3076 -10.8180 4.1860 35 1 0.1814 -10.0524 5.7167 36 1 2.1768 -10.7829 6.8899 37 1 3.7336 -12.6398 7.3232 38 1 3.9331 -14.4845 5.7048 39 1 2.5747 -14.4741 3.6518 40 1 -0.7579 -3.1417 3.0720 41 1 0.1794 -1.1822 1.9521 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222699345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:44 Heat of formation + Delta-G solvation = -34.964035 kcal Electronic energy + Delta-G solvation = -25028.647080 eV Core-core repulsion = 21106.762345 eV Total energy + Delta-G solvation = -3921.884735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.15635 -39.59862 -39.37189 -37.24128 -34.48949 -33.33616 -33.08735 -30.89863 -30.47623 -29.54826 -28.57755 -27.43818 -24.80843 -23.16449 -22.16798 -21.72199 -20.81312 -19.75663 -17.97048 -17.44361 -17.15380 -16.80147 -16.45671 -16.24918 -16.13151 -15.57233 -15.36343 -15.21444 -14.61271 -14.09927 -13.98797 -13.84972 -13.71835 -13.43870 -13.30774 -13.14708 -12.69360 -12.50910 -12.38134 -12.10169 -12.00997 -11.93296 -11.42436 -11.39940 -11.15706 -10.96455 -10.55152 -10.21332 -10.17563 -9.76416 -9.50714 -9.30151 -9.10921 -8.96399 -8.72543 -7.71524 -7.56534 -7.17266 -6.90680 -4.29010 0.52545 0.82836 1.56049 2.39563 2.53787 2.92915 3.04209 3.08435 3.11089 3.27480 3.31205 3.70577 3.88093 3.90514 4.13371 4.30341 4.47925 4.54500 4.72564 4.90834 4.94216 4.96497 5.02880 5.12480 5.17114 5.46937 5.66216 5.66658 5.74243 5.91355 6.00830 6.16588 6.41401 6.49299 6.74081 6.92551 6.98356 7.11929 7.26618 7.54542 7.65321 7.86184 8.00449 8.22424 8.24798 8.52924 8.70462 8.82346 8.97349 10.00129 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.031117 B = 0.001697 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.623198 B =16497.417533 C =16632.867621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.223 4.223 11 C -0.064 4.064 12 C -0.024 4.024 13 N -0.644 5.644 14 C 0.513 3.487 15 O -0.512 6.512 16 C -0.129 4.129 17 S -0.160 6.160 18 C -0.074 4.074 19 C -0.103 4.103 20 C -0.073 4.073 21 C -0.131 4.131 22 C -0.088 4.088 23 C -0.156 4.156 24 C 0.115 3.885 25 F -0.132 7.132 26 C -0.100 4.100 27 C -0.171 4.171 28 H 0.283 0.717 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.395 0.605 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 -21.603 13.042 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.101 0.899 9 C 0.110 3.890 10 C -0.243 4.243 11 C -0.084 4.084 12 C -0.116 4.116 13 N -0.287 5.287 14 C 0.297 3.703 15 O -0.388 6.388 16 C -0.281 4.281 17 S 0.068 5.932 18 C -0.221 4.221 19 C -0.106 4.106 20 C -0.093 4.093 21 C -0.149 4.149 22 C -0.107 4.107 23 C -0.174 4.174 24 C 0.094 3.906 25 F -0.111 7.111 26 C -0.120 4.120 27 C -0.191 4.191 28 H 0.094 0.906 29 H 0.113 0.887 30 H 0.121 0.879 31 H 0.228 0.772 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.107 0.893 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.186 -21.389 12.355 24.702 hybrid contribution -1.782 0.801 0.334 1.982 sum -1.968 -20.588 12.689 24.264 Atomic orbital electron populations 1.69943 1.08097 1.29905 1.31197 1.25951 0.94370 1.01559 0.91509 0.86501 0.81547 0.80762 0.79233 1.19431 1.19872 1.18054 1.19524 1.05400 0.93765 1.30481 0.89944 1.17608 0.89666 0.91860 0.89845 1.20605 1.07053 0.92289 1.04397 1.20312 0.96277 0.98075 0.93743 1.17022 1.07644 0.84641 1.02311 1.42799 1.11877 1.15896 1.58156 1.19534 0.86532 0.83376 0.80811 1.90742 1.16960 1.79210 1.51887 1.23552 1.01987 0.97876 1.04666 1.87877 1.17605 1.14579 1.73129 1.22338 0.99731 0.96200 1.03833 1.19243 1.00603 0.94851 0.95863 1.20990 0.94173 0.98318 0.95834 1.21220 0.99221 0.94262 1.00179 1.21067 0.97987 0.98618 0.93009 1.21163 0.97794 0.98757 0.99719 1.17553 0.93391 0.96021 0.83593 1.91522 1.74439 1.96434 1.48657 1.20156 1.00672 0.91538 0.99675 1.20611 1.02565 0.96623 0.99318 0.90572 0.88673 0.87934 0.77202 0.87534 0.87467 0.88951 0.88641 0.84644 0.85044 0.84899 0.84534 0.89267 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.34 11.78 55.55 0.65 -18.69 16 2 C 0.09 2.17 4.77 -17.34 -0.08 2.09 16 3 Si 0.90 18.20 29.66 -169.99 -5.04 13.16 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.46 -12.31 8.94 -37.85 -0.34 -12.65 16 8 H 0.08 2.12 8.02 -52.49 -0.42 1.70 16 9 C 0.11 3.04 5.57 -106.80 -0.60 2.45 16 10 C -0.22 -5.78 9.74 -39.25 -0.38 -6.16 16 11 C -0.06 -1.58 8.59 -39.79 -0.34 -1.92 16 12 C -0.02 -0.54 6.25 -83.57 -0.52 -1.07 16 13 N -0.64 -11.30 5.30 -9.74 -0.05 -11.36 16 14 C 0.51 9.02 7.66 -10.98 -0.08 8.94 16 15 O -0.51 -11.36 13.48 5.56 0.07 -11.29 16 16 C -0.13 -1.58 6.43 36.01 0.23 -1.35 16 17 S -0.16 -2.19 20.86 -107.50 -2.24 -4.43 16 18 C -0.07 -0.70 5.89 36.00 0.21 -0.48 16 19 C -0.10 -1.00 5.15 -104.56 -0.54 -1.54 16 20 C -0.07 -0.59 9.70 -39.59 -0.38 -0.97 16 21 C -0.13 -0.88 10.04 -39.57 -0.40 -1.27 16 22 C -0.09 -0.58 10.04 -39.59 -0.40 -0.98 16 23 C -0.16 -1.26 10.03 -39.51 -0.40 -1.66 16 24 C 0.12 1.18 7.24 -39.42 -0.29 0.89 16 25 F -0.13 -1.54 16.49 2.25 0.04 -1.50 16 26 C -0.10 -2.29 9.90 -39.79 -0.39 -2.68 16 27 C -0.17 -4.38 8.74 -39.26 -0.34 -4.73 16 28 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 29 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.10 2.51 6.45 -52.49 -0.34 2.17 16 31 H 0.39 5.32 8.82 -40.82 -0.36 4.96 16 32 H 0.11 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.83 7.65 -51.92 -0.40 0.43 16 35 H 0.10 0.70 8.09 -51.92 -0.42 0.28 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.11 2.77 6.52 -52.49 -0.34 2.43 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -31.96 372.03 -10.80 -42.76 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -4.80 Total: 8.82 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -5.04 Total: -23.08 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.60 Total: -30.05 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.07 Total: -11.29 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.04 Total: 13.16 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.24 Total: -4.43 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.96 -10.80 -42.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222699345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.793 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds