Wall clock time and date at job start Tue Mar 31 2020 05:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47054 * 2.31302 * 3 2 1 5 5 C 1.36871 * 120.00146 * 71.47942 * 4 3 2 6 6 H 1.08004 * 120.00083 * 183.36866 * 5 4 3 7 7 C 1.39049 * 120.00080 * 3.36490 * 5 4 3 8 8 N 1.31362 * 119.99899 * 317.18228 * 7 5 4 9 9 Si 1.86796 * 120.00133 * 137.18645 * 7 5 4 10 10 H 1.48493 * 109.47243 * 59.99454 * 9 7 5 11 11 H 1.48499 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46685 * 299.99975 * 9 7 5 13 13 C 1.34782 * 119.99814 * 251.47167 * 4 3 2 14 14 O 1.21592 * 119.99549 * 184.58702 * 13 4 3 15 15 C 1.47740 * 120.00052 * 4.59257 * 13 4 3 16 16 C 1.39691 * 120.11678 * 31.34209 * 15 13 4 17 17 C 1.37953 * 119.98344 * 179.72347 * 16 15 13 18 18 C 1.38273 * 120.23050 * 0.57836 * 17 16 15 19 19 C 1.38956 * 120.23351 * 359.69633 * 18 17 16 20 20 N 1.39983 * 119.99105 * 180.02562 * 19 18 17 21 21 C 1.34781 * 119.99638 * 212.71156 * 20 19 18 22 22 O 1.21509 * 120.00099 * 5.00605 * 21 20 19 23 23 O 1.34655 * 119.99880 * 185.01537 * 21 20 19 24 24 C 1.45197 * 116.99875 * 179.97438 * 23 21 20 25 25 C 1.53007 * 109.46894 * 60.00005 * 24 23 21 26 26 C 1.53001 * 109.47073 * 179.97438 * 24 23 21 27 27 C 1.52995 * 109.47225 * 299.99961 * 24 23 21 28 28 C 1.38609 * 120.01108 * 359.97438 * 19 18 17 29 29 H 4.40635 * 5.51427 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.47334 * 122.31230 * 3 2 1 31 31 H 1.09001 * 109.46764 * 242.31137 * 3 2 1 32 32 H 0.96992 * 120.00217 * 180.02562 * 8 7 5 33 33 H 1.08004 * 120.00569 * 359.97438 * 16 15 13 34 34 H 1.08009 * 119.88151 * 180.27255 * 17 16 15 35 35 H 1.07997 * 119.87837 * 179.72013 * 18 17 16 36 36 H 0.97006 * 120.00544 * 32.70317 * 20 19 18 37 37 H 1.08989 * 109.47271 * 60.00084 * 25 24 23 38 38 H 1.08999 * 109.46905 * 180.02562 * 25 24 23 39 39 H 1.09003 * 109.46679 * 299.99210 * 25 24 23 40 40 H 1.08998 * 109.46722 * 60.00149 * 26 24 23 41 41 H 1.09003 * 109.46899 * 180.02562 * 26 24 23 42 42 H 1.09001 * 109.46794 * 299.99961 * 26 24 23 43 43 H 1.09001 * 109.47170 * 59.99934 * 27 24 23 44 44 H 1.09001 * 109.47237 * 180.02562 * 27 24 23 45 45 H 1.09003 * 109.46892 * 299.99759 * 27 24 23 46 46 H 1.07998 * 120.10891 * 180.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3792 -0.0557 5 6 3.0083 -2.1040 -1.2099 6 1 3.3190 -3.1381 -1.2349 7 6 2.4798 -1.5090 -2.3501 8 7 1.4262 -0.7300 -2.2562 9 14 3.2678 -1.8175 -4.0154 10 1 3.2309 -3.2706 -4.3189 11 1 2.5215 -1.0735 -5.0616 12 1 4.6781 -1.3531 -3.9892 13 6 3.7095 -1.9349 1.0295 14 8 4.1901 -3.0496 0.9592 15 6 3.7552 -1.1896 2.3043 16 6 2.7344 -0.2931 2.6291 17 6 2.7770 0.3971 3.8229 18 6 3.8337 0.2139 4.6956 19 6 4.8570 -0.6713 4.3793 20 7 5.9241 -0.8532 5.2668 21 6 7.1565 -1.1231 4.7926 22 8 7.3610 -1.1187 3.5948 23 8 8.1612 -1.3978 5.6461 24 6 9.4615 -1.6795 5.0647 25 6 9.9303 -0.4699 4.2534 26 6 10.4680 -1.9655 6.1810 27 6 9.3565 -2.8993 4.1472 28 6 4.8208 -1.3750 3.1857 29 1 -1.0498 -0.0004 0.0002 30 1 3.0091 0.5501 -0.8685 31 1 3.0090 0.4784 0.9100 32 1 1.0573 -0.3153 -3.0516 33 1 1.9100 -0.1433 1.9477 34 1 1.9846 1.0866 4.0743 35 1 3.8636 0.7605 5.6266 36 1 5.7767 -0.7850 6.2232 37 1 10.0052 0.3990 4.9070 38 1 10.9063 -0.6816 3.8167 39 1 9.2134 -0.2659 3.4582 40 1 10.1342 -2.8270 6.7593 41 1 11.4443 -2.1766 5.7446 42 1 10.5427 -1.0961 6.8343 43 1 8.6395 -2.6952 3.3520 44 1 10.3328 -3.1111 3.7112 45 1 9.0225 -3.7610 4.7253 46 1 5.6151 -2.0637 2.9384 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225601588.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:21 Heat of formation + Delta-G solvation = 12.625359 kcal Electronic energy + Delta-G solvation = -30256.476341 eV Core-core repulsion = 26115.081333 eV Total energy + Delta-G solvation = -4141.395008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.10727 -39.68809 -38.28116 -36.85051 -35.30074 -34.86651 -33.97383 -32.17924 -31.38606 -30.59055 -29.35056 -27.59863 -27.49380 -26.43130 -25.25028 -23.69869 -22.85161 -21.47068 -20.12491 -19.60385 -18.23708 -18.00796 -17.36895 -16.52323 -16.41127 -16.26874 -16.04403 -15.31356 -14.92021 -14.63449 -14.53500 -14.45025 -14.12220 -13.71873 -13.64283 -13.36082 -12.95427 -12.71956 -12.68748 -12.54506 -12.30937 -12.18758 -12.06140 -12.04107 -11.94340 -11.61535 -11.51693 -11.23976 -11.08448 -10.79449 -10.57196 -10.51471 -10.30784 -10.17689 -9.93759 -9.28236 -9.09343 -8.90047 -8.61600 -8.36531 -8.04634 -7.90578 -6.43982 -3.73036 1.32083 1.62388 2.02521 2.78077 3.15103 3.25380 3.31288 3.64541 3.84561 3.98848 4.05111 4.21499 4.34687 4.53850 4.58356 4.73125 4.78001 5.00091 5.17069 5.24556 5.27367 5.35898 5.38896 5.52041 5.54764 5.58576 5.61789 5.69798 5.72296 5.74183 5.78799 5.83454 6.11170 6.17403 6.25460 6.26011 6.38750 6.44925 6.56456 6.59007 6.70224 6.91792 7.03338 7.24899 7.31471 7.44644 8.01157 8.28400 8.37011 8.96896 9.08377 9.29450 9.91000 10.39388 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.003082 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.196407 B = 9081.913786 C =10573.362144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.109 4.109 3 C 0.206 3.794 4 N -0.418 5.418 5 C -0.337 4.337 6 H 0.113 0.887 7 C 0.053 3.947 8 N -0.804 5.804 9 Si 0.894 3.106 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.271 1.271 13 C 0.468 3.532 14 O -0.583 6.583 15 C -0.074 4.074 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.142 4.142 19 C 0.144 3.856 20 N -0.650 5.650 21 C 0.647 3.353 22 O -0.539 6.539 23 O -0.364 6.364 24 C 0.136 3.864 25 C -0.185 4.185 26 C -0.139 4.139 27 C -0.187 4.187 28 C -0.078 4.078 29 H 0.197 0.803 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.271 0.729 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.413 0.587 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.355 5.538 16.415 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.111 4.111 3 C 0.084 3.916 4 N -0.134 5.134 5 C -0.462 4.462 6 H 0.131 0.869 7 C -0.157 4.157 8 N -0.436 5.436 9 Si 0.719 3.281 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.259 3.741 14 O -0.469 6.469 15 C -0.079 4.079 16 C -0.147 4.147 17 C -0.125 4.125 18 C -0.163 4.163 19 C 0.052 3.948 20 N -0.302 5.302 21 C 0.401 3.599 22 O -0.425 6.425 23 O -0.279 6.279 24 C 0.100 3.900 25 C -0.242 4.242 26 C -0.197 4.197 27 C -0.244 4.244 28 C -0.099 4.099 29 H 0.214 0.786 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.249 0.751 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.717 5.049 15.630 19.085 hybrid contribution -0.069 0.020 -0.572 0.576 sum 9.648 5.069 15.058 18.588 Atomic orbital electron populations 1.24074 0.95095 1.00925 1.06108 1.22391 0.93722 0.99376 0.95624 1.18866 0.85308 0.85505 1.01954 1.43714 1.48186 1.10505 1.10949 1.19482 1.43113 0.98245 0.85383 0.86889 1.25256 0.94061 0.96404 0.99973 1.70518 1.13512 1.28925 1.30639 0.86510 0.80678 0.79186 0.81756 1.19511 1.21131 1.19662 1.17650 0.86356 0.87144 0.82957 1.90612 1.52008 1.20351 1.83917 1.20168 0.94640 0.96750 0.96315 1.22065 0.99469 0.95904 0.97227 1.20818 0.97845 1.00235 0.93601 1.20780 0.95557 0.98758 1.01218 1.17297 0.87867 0.97920 0.91717 1.41968 1.04732 1.73163 1.10314 1.18061 0.81230 0.76693 0.83941 1.90999 1.82410 1.54893 1.14247 1.86273 1.19248 1.82615 1.39809 1.22116 0.78071 0.95937 0.93882 1.22532 1.03178 0.96836 1.01669 1.21858 0.97285 1.02811 0.97701 1.22548 1.04276 0.96481 1.01097 1.21176 0.98188 0.98120 0.92413 0.78609 0.90018 0.89080 0.91748 0.83673 0.85417 0.85892 0.75084 0.92235 0.91023 0.89127 0.91454 0.90069 0.91554 0.88976 0.91000 0.92052 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.99 18.53 29.55 0.55 -4.44 16 2 C -0.11 -2.41 8.53 -37.12 -0.32 -2.72 16 3 C 0.21 4.60 4.78 -6.83 -0.03 4.57 16 4 N -0.42 -10.83 2.68 -119.05 -0.32 -11.15 16 5 C -0.34 -9.40 9.20 -15.00 -0.14 -9.54 16 6 H 0.11 3.38 7.40 -52.48 -0.39 2.99 16 7 C 0.05 1.37 4.66 -17.45 -0.08 1.29 16 8 N -0.80 -20.36 8.79 55.50 0.49 -19.87 16 9 Si 0.89 20.12 29.69 -169.99 -5.05 15.08 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 C 0.47 12.12 7.37 -12.37 -0.09 12.03 16 14 O -0.58 -17.09 16.34 5.28 0.09 -17.00 16 15 C -0.07 -1.57 5.38 -104.99 -0.56 -2.14 16 16 C -0.13 -2.27 7.37 -39.14 -0.29 -2.56 16 17 C -0.11 -1.49 10.02 -39.67 -0.40 -1.88 16 18 C -0.14 -1.84 9.95 -39.30 -0.39 -2.23 16 19 C 0.14 2.21 6.29 -83.73 -0.53 1.69 16 20 N -0.65 -8.30 5.35 -14.30 -0.08 -8.38 16 21 C 0.65 9.41 7.80 54.06 0.42 9.83 16 22 O -0.54 -9.53 9.51 -19.28 -0.18 -9.71 16 23 O -0.36 -4.50 9.94 -40.37 -0.40 -4.90 16 24 C 0.14 1.47 1.13 -90.62 -0.10 1.36 16 25 C -0.19 -1.98 8.37 37.16 0.31 -1.66 16 26 C -0.14 -1.04 8.85 37.16 0.33 -0.72 16 27 C -0.19 -2.16 8.37 37.15 0.31 -1.85 16 28 C -0.08 -1.52 8.21 -38.97 -0.32 -1.84 16 29 H 0.20 3.32 7.80 -54.10 -0.42 2.90 16 30 H 0.08 1.86 7.38 -51.93 -0.38 1.48 16 31 H 0.09 1.78 4.37 -51.93 -0.23 1.56 16 32 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 33 H 0.15 2.71 3.94 -52.48 -0.21 2.50 16 34 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.41 3.74 8.92 -40.82 -0.36 3.38 16 37 H 0.06 0.58 8.14 -51.94 -0.42 0.15 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 1.38 5.88 -51.93 -0.31 1.07 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.14 3.11 6.25 -52.49 -0.33 2.78 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -32.99 377.66 -6.96 -39.95 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -5.87 Total: 11.11 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.33 Total: -0.82 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.09 Total: -39.40 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.50 Total: -31.61 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.05 Total: 15.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.99 -6.96 -39.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225601588.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.571 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds