Wall clock time and date at job start Tue Mar 31 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99671 * 2 1 4 4 C 1.38796 * 120.03140 * 0.02562 * 3 2 1 5 5 C 1.38148 * 120.05803 * 179.70395 * 4 3 2 6 6 C 1.38200 * 120.10761 * 0.55097 * 5 4 3 7 7 C 1.50705 * 119.97419 * 179.72357 * 6 5 4 8 8 H 1.08992 * 110.36598 * 217.37954 * 7 6 5 9 9 C 1.54379 * 110.51242 * 94.95856 * 7 6 5 10 10 C 1.54255 * 105.05859 * 217.32258 * 9 7 6 11 11 C 1.54373 * 105.06355 * 359.97438 * 10 9 7 12 12 N 1.48554 * 104.59552 * 23.85674 * 11 10 9 13 13 C 1.46904 * 111.00159 * 200.96128 * 12 11 10 14 14 C 1.52996 * 109.46858 * 285.41416 * 13 12 11 15 15 H 1.09000 * 109.47753 * 305.00128 * 14 13 12 16 16 C 1.47204 * 109.47042 * 64.99895 * 14 13 12 17 17 N 9.66752 * 95.50347 * 350.05031 * 2 1 3 18 18 C 1.52996 * 109.47153 * 184.99851 * 14 13 12 19 19 C 1.50702 * 109.47159 * 175.00123 * 18 14 13 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 14 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 14 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 C 1.38753 * 120.05284 * 359.45136 * 6 5 4 28 28 O 1.35895 * 120.02508 * 180.25081 * 27 6 5 29 29 C 1.42895 * 117.00023 * 180.02562 * 28 27 6 30 30 C 1.38612 * 120.02862 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47069 * 60.00033 * 1 2 3 32 32 H 1.09002 * 109.46802 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47178 * 300.00034 * 1 2 3 34 34 H 1.08006 * 119.96836 * 0.02562 * 4 3 2 35 35 H 1.07997 * 119.94967 * 180.27539 * 5 4 3 36 36 H 1.09004 * 110.32395 * 336.21646 * 9 7 6 37 37 H 1.08998 * 110.32274 * 98.41844 * 9 7 6 38 38 H 1.08997 * 110.32702 * 118.90020 * 10 9 7 39 39 H 1.09001 * 110.32113 * 241.09905 * 10 9 7 40 40 H 1.08997 * 110.41317 * 265.07475 * 11 10 9 41 41 H 1.09004 * 110.41074 * 142.63494 * 11 10 9 42 42 H 1.08997 * 109.46933 * 165.41577 * 13 12 11 43 43 H 1.08996 * 109.47325 * 45.41719 * 13 12 11 44 44 H 1.09004 * 109.47066 * 55.00326 * 18 14 13 45 45 H 1.08994 * 109.47405 * 295.00156 * 18 14 13 46 46 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.47442 * 299.99905 * 29 28 27 48 48 H 1.09002 * 109.47344 * 59.99825 * 29 28 27 49 49 H 1.08996 * 109.47667 * 179.97438 * 29 28 27 50 50 H 1.08008 * 120.05402 * 0.04690 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3753 0.0005 5 6 1.9171 3.6065 0.0067 6 6 3.2970 3.6822 0.0009 7 6 3.9773 5.0270 0.0013 8 1 4.8703 5.0005 -0.6230 9 6 4.3393 5.4496 1.4414 10 6 4.0978 6.9725 1.4848 11 6 3.6108 7.3421 0.0673 12 7 3.0444 6.0803 -0.4748 13 6 2.9930 6.1140 -1.9425 14 6 1.8501 7.0264 -2.3919 15 1 0.9188 6.6958 -1.9320 16 6 2.1363 8.4105 -1.9803 17 7 2.3562 9.4782 -1.6627 18 6 1.7167 6.9645 -3.9148 19 6 0.5155 7.7654 -4.3469 20 1 -0.0918 8.2687 -3.6092 21 6 0.1955 7.8609 -5.6847 22 7 -0.8496 8.5644 -6.0622 23 14 1.2463 6.9910 -6.9608 24 1 0.7179 5.6218 -7.1871 25 1 1.2094 7.7528 -8.2350 26 1 2.6470 6.9070 -6.4747 27 6 4.0566 2.5211 0.0003 28 8 5.4135 2.5962 -0.0003 29 6 6.1316 1.3608 -0.0014 30 6 3.4301 1.2842 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2120 2.3187 0.0014 35 1 1.3276 4.5114 0.0116 36 1 3.6930 4.9432 2.1583 37 1 5.3856 5.2260 1.6498 38 1 3.3331 7.2137 2.2231 39 1 5.0255 7.4965 1.7146 40 1 4.4467 7.6780 -0.5463 41 1 2.8418 8.1129 0.1184 42 1 2.8250 5.1067 -2.3234 43 1 3.9371 6.4963 -2.3305 44 1 1.5933 5.9274 -4.2269 45 1 2.6139 7.3781 -4.3752 46 1 -1.0749 8.6312 -7.0033 47 1 5.8704 0.7878 0.8883 48 1 5.8695 0.7890 -0.8917 49 1 7.2026 1.5630 -0.0023 50 1 4.0197 0.3793 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229254049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:00 Heat of formation + Delta-G solvation = -14.869678 kcal Electronic energy + Delta-G solvation = -30640.424527 eV Core-core repulsion = 26633.670339 eV Total energy + Delta-G solvation = -4006.754188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.81254 -39.36384 -38.93569 -36.74650 -36.08895 -34.04995 -32.54161 -31.55448 -30.68613 -30.37642 -28.26121 -27.44299 -26.87318 -26.61861 -23.58030 -22.61369 -22.03894 -21.52560 -20.57114 -20.12648 -18.79726 -17.13877 -16.84088 -16.82171 -16.36168 -16.21979 -16.10072 -15.68638 -15.54575 -15.02335 -14.57857 -14.28091 -14.20528 -13.66840 -13.49481 -13.28840 -13.05713 -12.96192 -12.87308 -12.51733 -12.44373 -12.29028 -12.25488 -12.17026 -11.94201 -11.70750 -11.59504 -11.37089 -11.26807 -10.99258 -10.91068 -10.79421 -10.73343 -10.58126 -10.43128 -10.39288 -9.88748 -9.73187 -9.30747 -8.66271 -8.60185 -8.42362 -7.99414 -6.09389 -4.09635 1.32897 1.34435 2.96155 3.21412 3.26986 3.35711 3.37178 3.58663 3.62880 3.65701 3.97747 4.39694 4.65367 4.70477 4.73632 4.79150 4.82098 4.88693 4.93012 4.97797 5.00991 5.02669 5.09534 5.21524 5.25543 5.27098 5.32815 5.37089 5.43550 5.45644 5.61024 5.66628 5.74085 5.79405 5.87865 5.91282 6.00976 6.12991 6.15944 6.20781 6.21095 6.31429 6.39392 6.46304 6.57985 6.94682 6.98625 7.06626 7.12413 7.18926 7.31356 7.65543 8.38498 8.44952 8.94377 9.50842 11.03739 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008947 B = 0.003514 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.702200 B = 7966.535905 C = 9544.095267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.160 3.840 4 C -0.244 4.244 5 C -0.013 4.013 6 C -0.137 4.137 7 C 0.117 3.883 8 H 0.064 0.936 9 C -0.109 4.109 10 C -0.123 4.123 11 C 0.026 3.974 12 N -0.506 5.506 13 C 0.049 3.951 14 C 0.021 3.979 15 H 0.114 0.886 16 C 0.247 3.753 17 N -0.473 5.473 18 C -0.005 4.005 19 C -0.526 4.526 20 H 0.074 0.926 21 C 0.072 3.928 22 N -0.897 5.897 23 Si 0.876 3.124 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.264 1.264 27 C 0.166 3.834 28 O -0.310 6.310 29 C 0.026 3.974 30 C -0.247 4.247 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.043 0.957 44 H 0.034 0.966 45 H 0.023 0.977 46 H 0.264 0.736 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.098 0.902 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.459 -18.940 15.862 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.114 3.886 4 C -0.263 4.263 5 C -0.031 4.031 6 C -0.139 4.139 7 C 0.009 3.991 8 H 0.082 0.918 9 C -0.148 4.148 10 C -0.161 4.161 11 C -0.102 4.102 12 N -0.229 5.229 13 C -0.080 4.080 14 C -0.001 4.001 15 H 0.132 0.868 16 C -0.069 4.069 17 N -0.150 5.150 18 C -0.044 4.044 19 C -0.564 4.564 20 H 0.092 0.908 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.703 3.297 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.189 1.189 27 C 0.120 3.880 28 O -0.223 6.223 29 C -0.069 4.069 30 C -0.266 4.266 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.168 0.832 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.041 0.959 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.117 0.883 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.346 -17.378 16.353 26.009 hybrid contribution 0.825 -0.872 -1.423 1.862 sum 11.172 -18.249 14.930 26.091 Atomic orbital electron populations 1.23075 0.78069 1.03790 1.01843 1.86020 1.21663 1.27182 1.88532 1.18691 0.91483 0.84217 0.94182 1.21240 1.00263 0.92119 1.12667 1.20858 0.92990 0.97644 0.91590 1.18886 0.93011 0.91920 1.10034 1.21179 0.93216 0.88604 0.96144 0.91837 1.22270 1.01256 0.95474 0.95762 1.22299 1.00994 0.95680 0.97126 1.23335 0.98733 0.93169 0.94943 1.65274 1.45282 1.02911 1.09458 1.22441 0.97654 1.00830 0.87055 1.19003 0.99189 0.82215 0.99656 0.86796 1.28992 0.92109 0.94909 0.90938 1.81022 1.10157 1.12132 1.11647 1.19633 0.98539 0.98302 0.87892 1.21028 1.10332 1.31478 0.93547 0.90767 1.24978 0.94815 0.94781 0.98460 1.69905 1.26615 1.40435 1.16595 0.86843 0.81658 0.79965 0.81262 1.20003 1.21336 1.18891 1.18458 0.82215 0.92568 0.94758 1.86103 1.15335 1.32414 1.88409 1.23059 0.96679 0.85662 1.01480 1.20224 0.92665 0.97164 1.16574 0.92192 0.88417 0.92481 0.85258 0.83230 0.91067 0.91363 0.91085 0.91632 0.93805 0.89336 0.88927 0.93893 0.94796 0.95904 0.92598 0.92634 0.92560 0.88337 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.45 10.50 -19.42 -0.20 -3.66 16 3 C 0.16 1.85 6.68 -39.24 -0.26 1.59 16 4 C -0.24 -2.74 9.04 -39.41 -0.36 -3.09 16 5 C -0.01 -0.15 9.30 -39.63 -0.37 -0.52 16 6 C -0.14 -1.66 4.60 -104.44 -0.48 -2.15 16 7 C 0.12 1.42 2.15 -67.23 -0.14 1.27 16 8 H 0.06 0.82 7.67 -51.93 -0.40 0.42 16 9 C -0.11 -1.18 6.54 -25.35 -0.17 -1.35 16 10 C -0.12 -1.37 7.00 -25.35 -0.18 -1.55 16 11 C 0.03 0.36 4.97 -2.19 -0.01 0.35 16 12 N -0.51 -6.76 3.71 -223.53 -0.83 -7.59 16 13 C 0.05 0.73 4.39 -3.82 -0.02 0.71 16 14 C 0.02 0.38 2.42 -93.41 -0.23 0.16 16 15 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 16 C 0.25 4.97 10.96 -20.77 -0.23 4.75 16 17 N -0.47 -10.25 17.72 42.13 0.75 -9.50 16 18 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 19 C -0.53 -14.21 9.15 -34.44 -0.32 -14.52 16 20 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 21 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 22 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 23 Si 0.88 20.83 27.47 -169.99 -4.67 16.16 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 27 C 0.17 1.93 6.66 -39.24 -0.26 1.67 16 28 O -0.31 -3.30 9.70 -19.41 -0.19 -3.48 16 29 C 0.03 0.18 9.81 101.05 0.99 1.17 16 30 C -0.25 -2.77 8.97 -39.29 -0.35 -3.12 16 31 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 34 H 0.13 1.23 6.29 -52.48 -0.33 0.90 16 35 H 0.15 1.81 7.18 -52.49 -0.38 1.43 16 36 H 0.07 0.77 7.86 -51.93 -0.41 0.36 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.04 0.63 7.75 -51.93 -0.40 0.23 16 41 H 0.09 1.39 5.76 -51.93 -0.30 1.09 16 42 H 0.09 1.29 7.78 -51.93 -0.40 0.89 16 43 H 0.04 0.64 7.77 -51.93 -0.40 0.23 16 44 H 0.03 0.69 7.58 -51.93 -0.39 0.30 16 45 H 0.02 0.51 7.19 -51.93 -0.37 0.13 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 48 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 49 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.13 1.27 6.30 -52.48 -0.33 0.94 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -32.14 399.97 -7.75 -39.88 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.83 Total: 0.24 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -1.58 Total: -11.72 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.69 Total: -43.46 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.39 Total: -7.14 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.14 -7.75 -39.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229254049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.012 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds