Wall clock time and date at job start Tue Mar 31 2020 04:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46904 * 109.46884 * 2 1 4 4 C 1.46759 * 111.00010 * 189.99936 * 3 2 1 5 5 C 1.53432 * 108.59520 * 74.51391 * 4 3 2 6 6 H 1.09000 * 109.77370 * 303.60043 * 5 4 3 7 7 C 1.53001 * 109.77525 * 182.85572 * 5 4 3 8 8 N 1.46900 * 109.46934 * 173.73575 * 7 5 4 9 9 C 1.46900 * 111.00016 * 71.07511 * 8 7 5 10 10 C 1.46902 * 110.99785 * 195.02661 * 8 7 5 11 11 C 1.53006 * 109.47029 * 75.68641 * 10 8 7 12 12 H 1.08996 * 109.47019 * 303.60971 * 11 10 8 13 13 C 1.47201 * 109.47049 * 63.60484 * 11 10 8 14 14 N 6.56287 * 129.45821 * 235.63669 * 2 1 3 15 15 C 1.52994 * 109.47041 * 183.60701 * 11 10 8 16 16 C 1.50704 * 109.47208 * 175.00022 * 15 11 10 17 17 H 1.07998 * 119.99460 * 359.97438 * 16 15 11 18 18 C 1.37870 * 120.00433 * 179.97438 * 16 15 11 19 19 N 1.31522 * 119.99772 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00462 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47356 * 89.99858 * 20 18 16 22 22 H 1.48499 * 109.47639 * 210.00261 * 20 18 16 23 23 H 1.48506 * 109.46951 * 329.99884 * 20 18 16 24 24 O 1.43138 * 107.94308 * 63.22338 * 5 4 3 25 25 C 1.36178 * 116.65913 * 314.75381 * 24 5 4 26 26 C 1.38782 * 118.72339 * 194.67042 * 25 24 5 27 27 C 1.38176 * 120.20270 * 180.41419 * 26 25 24 28 28 C 1.38253 * 120.02998 * 359.94019 * 27 26 25 29 29 C 1.38071 * 120.11655 * 359.95783 * 28 27 26 30 30 C 1.38959 * 121.39843 * 14.88637 * 25 24 5 31 31 H 1.09001 * 109.46622 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46872 * 300.00097 * 1 2 3 33 33 H 1.08998 * 109.46868 * 60.00518 * 1 2 3 34 34 H 1.08999 * 109.47603 * 240.00037 * 2 1 3 35 35 H 1.08998 * 109.47376 * 119.99623 * 2 1 3 36 36 H 1.08997 * 109.61630 * 314.78504 * 4 3 2 37 37 H 1.08998 * 109.76472 * 194.33264 * 4 3 2 38 38 H 1.08995 * 109.47371 * 53.73534 * 7 5 4 39 39 H 1.08997 * 109.46983 * 293.73433 * 7 5 4 40 40 H 1.09001 * 109.47068 * 176.22664 * 9 8 7 41 41 H 1.09000 * 109.46862 * 296.22602 * 9 8 7 42 42 H 1.08998 * 109.46888 * 56.22575 * 9 8 7 43 43 H 1.08996 * 109.47517 * 315.68842 * 10 8 7 44 44 H 1.09001 * 109.47033 * 195.68531 * 10 8 7 45 45 H 1.08997 * 109.47247 * 294.99623 * 15 11 10 46 46 H 1.09004 * 109.47229 * 54.99973 * 15 11 10 47 47 H 0.96998 * 119.99624 * 180.02562 * 19 18 16 48 48 H 1.07999 * 119.89704 * 0.36736 * 26 25 24 49 49 H 1.07995 * 119.98365 * 179.97438 * 27 26 25 50 50 H 1.08001 * 119.94583 * 179.97438 * 28 27 26 51 51 H 1.07997 * 119.87631 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4671 1.4312 -0.2379 5 6 3.7286 1.1402 -1.7215 6 1 3.2884 0.1805 -1.9922 7 6 5.2354 1.1115 -1.9856 8 7 5.4818 0.6859 -3.3699 9 6 5.0874 1.7338 -4.3209 10 6 6.8872 0.3036 -3.5608 11 6 7.1312 -1.0713 -2.9353 12 1 6.8466 -1.0476 -1.8834 13 6 6.3239 -2.0809 -3.6394 14 7 5.7008 -2.8601 -4.1828 15 6 8.6137 -1.4300 -3.0546 16 6 8.8768 -2.7258 -2.3315 17 1 8.0676 -3.2416 -1.8362 18 6 10.1505 -3.2528 -2.3025 19 7 11.1361 -2.6243 -2.9053 20 14 10.4765 -4.8593 -1.4069 21 1 10.2959 -5.9952 -2.3462 22 1 11.8676 -4.8631 -0.8873 23 1 9.5250 -4.9969 -0.2750 24 8 3.1221 2.1850 -2.4893 25 6 1.8586 2.5490 -2.1351 26 6 1.1151 3.3211 -3.0165 27 6 -0.1671 3.7150 -2.6844 28 6 -0.7140 3.3391 -1.4716 29 6 0.0185 2.5692 -0.5901 30 6 1.3100 2.1675 -0.9167 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.9629 0.6788 0.3754 37 1 3.8507 2.4198 0.0143 38 1 5.7111 0.4105 -1.2999 39 1 5.6501 2.1077 -1.8325 40 1 5.3421 1.4202 -5.3333 41 1 4.0126 1.9012 -4.2519 42 1 5.6150 2.6575 -4.0831 43 1 7.5325 1.0401 -3.0820 44 1 7.1111 0.2627 -4.6268 45 1 8.8773 -1.5409 -4.1064 46 1 9.2162 -0.6374 -2.6106 47 1 12.0321 -2.9953 -2.8852 48 1 1.5402 3.6157 -3.9646 49 1 -0.7424 4.3161 -3.3728 50 1 -1.7162 3.6480 -1.2132 51 1 -0.4124 2.2782 0.3564 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229487745.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:14 Heat of formation + Delta-G solvation = 31.008467 kcal Electronic energy + Delta-G solvation = -30407.741397 eV Core-core repulsion = 26500.695296 eV Total energy + Delta-G solvation = -3907.046100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.55442 -38.55441 -37.41939 -37.08156 -35.60659 -33.64072 -32.28699 -31.65225 -30.93580 -30.59757 -28.46951 -27.39174 -25.72676 -24.61591 -23.66399 -22.85470 -22.65541 -21.76546 -21.17640 -19.96508 -18.28181 -17.13102 -16.88481 -16.55255 -16.35268 -15.81640 -15.53288 -15.34468 -15.07627 -14.70010 -14.49631 -14.37654 -14.14671 -14.08478 -13.68133 -13.21276 -12.99123 -12.82882 -12.68091 -12.45196 -12.36659 -12.31551 -11.99440 -11.94028 -11.80928 -11.68655 -11.58736 -11.50954 -11.29855 -11.18479 -11.07071 -11.02136 -10.80951 -10.70741 -10.53255 -10.21005 -9.60898 -9.49685 -9.25289 -8.52672 -8.48201 -8.26238 -8.12191 -6.12108 -4.15420 1.07931 1.22554 3.01663 3.27830 3.32410 3.34617 3.37271 3.57256 3.71013 3.78906 3.86516 4.36238 4.40955 4.57255 4.65634 4.72783 4.76057 4.83529 4.88049 4.89097 5.05227 5.08170 5.17486 5.19516 5.25980 5.26305 5.32157 5.39216 5.44662 5.52654 5.55840 5.63025 5.66305 5.75922 5.80142 5.83068 5.86871 5.97575 5.99670 6.02477 6.22257 6.29336 6.31606 6.41450 6.46255 6.62184 6.85293 7.08875 7.12589 7.30217 7.39545 7.50076 7.82948 8.20388 8.57360 8.89293 9.50216 10.98771 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017232 B = 0.002479 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.509238 B =11291.931247 C =12119.721571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.046 3.954 3 N -0.486 5.486 4 C 0.021 3.979 5 C 0.058 3.942 6 H 0.084 0.916 7 C 0.063 3.937 8 N -0.544 5.544 9 C 0.025 3.975 10 C 0.060 3.940 11 C 0.012 3.988 12 H 0.097 0.903 13 C 0.257 3.743 14 N -0.481 5.481 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.273 1.273 24 O -0.298 6.298 25 C 0.094 3.906 26 C -0.138 4.138 27 C -0.098 4.098 28 C -0.150 4.150 29 C -0.081 4.081 30 C 0.023 3.977 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.024 0.976 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.026 0.974 46 H 0.037 0.963 47 H 0.263 0.737 48 H 0.128 0.872 49 H 0.126 0.874 50 H 0.123 0.877 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.834 15.162 5.181 26.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.079 4.079 3 N -0.203 5.203 4 C -0.107 4.107 5 C 0.000 4.000 6 H 0.102 0.898 7 C -0.066 4.066 8 N -0.267 5.267 9 C -0.123 4.123 10 C -0.068 4.068 11 C -0.010 4.010 12 H 0.115 0.885 13 C -0.060 4.060 14 N -0.157 5.157 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 O -0.212 6.212 25 C 0.046 3.954 26 C -0.158 4.158 27 C -0.117 4.117 28 C -0.169 4.169 29 C -0.100 4.100 30 C -0.073 4.073 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.044 0.956 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.146 0.854 49 H 0.144 0.856 50 H 0.141 0.859 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.808 13.778 4.586 26.200 hybrid contribution 1.259 -0.362 0.268 1.337 sum -20.549 13.417 4.854 25.016 Atomic orbital electron populations 1.22226 0.94572 1.02294 1.02761 1.22311 0.96496 0.87136 1.01920 1.59431 1.03504 1.10725 1.46636 1.22948 0.87698 1.04904 0.95158 1.23215 0.95012 0.90120 0.91624 0.89829 1.22184 0.91909 1.00694 0.91837 1.61993 1.21645 1.39889 1.03209 1.22540 1.02176 0.91956 0.95599 1.22289 0.86963 0.95586 1.02006 1.19229 0.96985 0.87328 0.97448 0.88521 1.28848 0.91474 0.92949 0.92736 1.80985 1.12525 1.11567 1.10667 1.19175 0.85416 0.97597 0.98580 1.21125 0.94257 1.06851 1.34179 0.92537 1.24952 0.96227 0.97372 0.95414 1.69940 1.00788 1.39070 1.43194 0.86596 0.77517 0.83922 0.80068 1.20635 1.21091 1.19753 1.86431 1.25403 1.53231 1.56170 1.19161 0.86325 0.98132 0.91798 1.20464 0.94245 1.01530 0.99511 1.20909 0.94360 0.99492 0.96926 1.20924 1.00406 1.00639 0.94929 1.20994 0.92685 0.96525 0.99822 1.18708 0.95579 1.02880 0.90177 0.91832 0.91551 0.91517 0.93669 0.89605 0.87943 0.88761 0.88044 0.93184 0.91950 0.89921 0.95726 0.92488 0.90115 0.95570 0.94448 0.92781 0.85368 0.85621 0.85868 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.46 37.16 0.31 -0.98 16 2 C 0.05 0.43 5.82 -3.82 -0.02 0.41 16 3 N -0.49 -4.97 4.80 -170.81 -0.82 -5.79 16 4 C 0.02 0.21 5.32 -3.68 -0.02 0.19 16 5 C 0.06 0.65 2.98 -26.51 -0.08 0.58 16 6 H 0.08 1.08 6.57 -51.93 -0.34 0.74 16 7 C 0.06 0.71 4.65 -3.82 -0.02 0.69 16 8 N -0.54 -7.30 4.32 -242.92 -1.05 -8.35 16 9 C 0.03 0.31 9.03 60.06 0.54 0.85 16 10 C 0.06 0.88 4.37 -3.82 -0.02 0.86 16 11 C 0.01 0.22 2.26 -93.41 -0.21 0.01 16 12 H 0.10 1.60 6.67 -51.93 -0.35 1.25 16 13 C 0.26 5.32 13.63 -20.76 -0.28 5.03 16 14 N -0.48 -10.87 18.54 42.16 0.78 -10.09 16 15 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 16 C -0.53 -13.79 8.60 -34.44 -0.30 -14.08 16 17 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 O -0.30 -3.63 7.12 -20.31 -0.14 -3.78 16 25 C 0.09 1.09 6.47 -39.11 -0.25 0.84 16 26 C -0.14 -1.42 9.94 -39.40 -0.39 -1.81 16 27 C -0.10 -0.84 10.04 -39.60 -0.40 -1.23 16 28 C -0.15 -1.24 10.03 -39.64 -0.40 -1.63 16 29 C -0.08 -0.75 7.01 -39.31 -0.28 -1.02 16 30 C 0.02 0.25 4.64 -83.59 -0.39 -0.14 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.48 6.88 -51.93 -0.36 0.12 16 33 H 0.07 0.60 5.63 -51.93 -0.29 0.31 16 34 H 0.05 0.47 6.45 -51.93 -0.33 0.14 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.85 8.02 -51.93 -0.42 0.44 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.09 6.50 -51.93 -0.34 0.75 16 39 H 0.05 0.54 8.00 -51.93 -0.42 0.12 16 40 H 0.06 0.76 7.89 -51.93 -0.41 0.35 16 41 H 0.08 1.05 5.62 -51.93 -0.29 0.75 16 42 H 0.02 0.28 8.05 -51.93 -0.42 -0.14 16 43 H 0.06 0.76 8.00 -51.93 -0.42 0.34 16 44 H 0.08 1.21 7.77 -51.93 -0.40 0.80 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 49 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 51 H 0.13 1.04 6.23 -52.49 -0.33 0.72 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -30.84 401.11 -9.91 -40.75 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -8.02 Total: -1.06 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -2.41 Total: -9.27 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.35 Total: -48.77 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.14 Total: -3.78 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.84 -9.91 -40.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229487745.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.760 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds