Wall clock time and date at job start Tue Mar 31 2020 05:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46706 * 154.00848 * 3 2 1 5 5 N 1.46504 * 109.46724 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00037 * 274.97381 * 5 4 3 7 7 C 1.50702 * 109.46768 * 270.00257 * 6 5 4 8 8 H 1.08006 * 120.00270 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99808 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00103 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99950 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47306 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47272 * 119.99989 * 11 9 7 14 14 H 1.48501 * 109.47439 * 239.99974 * 11 9 7 15 15 C 1.34777 * 119.99930 * 94.97352 * 5 4 3 16 16 O 1.21572 * 119.99911 * 185.68324 * 15 5 4 17 17 C 1.47692 * 120.00077 * 5.40545 * 15 5 4 18 18 C 1.39651 * 120.16569 * 55.27296 * 17 15 5 19 19 C 1.37854 * 119.87676 * 179.81513 * 18 17 15 20 20 C 1.50700 * 119.89298 * 180.21111 * 19 18 17 21 21 F 1.39904 * 109.47332 * 180.23339 * 20 19 18 22 22 F 1.39904 * 109.47086 * 300.23269 * 20 19 18 23 23 F 1.39901 * 109.47181 * 60.22995 * 20 19 18 24 24 C 1.38462 * 120.21924 * 0.44236 * 19 18 17 25 25 C 1.38204 * 120.33992 * 359.78531 * 24 19 18 26 26 C 1.38322 * 120.11256 * 0.02562 * 25 24 19 27 27 F 1.35104 * 120.11062 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47075 * 34.00656 * 3 2 1 29 29 H 1.09006 * 109.46955 * 274.00512 * 3 2 1 30 30 H 1.08993 * 109.47076 * 60.00158 * 4 3 2 31 31 H 1.08997 * 109.47321 * 299.99545 * 4 3 2 32 32 H 1.09002 * 109.47306 * 29.99743 * 6 5 4 33 33 H 1.08993 * 109.47193 * 150.00504 * 6 5 4 34 34 H 0.96995 * 119.99828 * 179.97438 * 10 9 7 35 35 H 1.08001 * 120.06200 * 0.02562 * 18 17 15 36 36 H 1.08001 * 119.83300 * 179.76866 * 24 19 18 37 37 H 1.07994 * 119.94600 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.2976 -0.6322 5 7 4.5823 1.2985 -0.6316 6 6 5.3141 1.7542 0.5529 7 6 5.5643 3.2367 0.4492 8 1 5.2137 3.7845 -0.4130 9 6 6.2408 3.8936 1.4551 10 7 6.6674 3.2266 2.5053 11 14 6.5516 5.7311 1.3263 12 1 5.9746 6.2430 0.0573 13 1 5.9126 6.4228 2.4745 14 1 8.0140 5.9884 1.3450 15 6 5.2569 0.8801 -1.7209 16 8 6.4682 0.7826 -1.6854 17 6 4.5240 0.5342 -2.9556 18 6 3.6618 1.4623 -3.5432 19 6 2.9836 1.1346 -4.6978 20 6 2.0567 2.1376 -5.3349 21 9 1.4837 1.5797 -6.4828 22 9 1.0470 2.4804 -4.4291 23 9 2.7788 3.2838 -5.6840 24 6 3.1477 -0.1149 -5.2715 25 6 3.9951 -1.0420 -4.6950 26 6 4.6854 -0.7264 -3.5386 27 9 5.5134 -1.6329 -2.9748 28 1 2.9717 -0.8511 -0.5747 29 1 2.9713 -0.0710 1.0252 30 1 2.7536 2.1492 -0.0574 31 1 2.7540 1.3692 -1.6573 32 1 4.7248 1.5468 1.4461 33 1 6.2668 1.2285 0.6159 34 1 7.1436 3.6887 3.2127 35 1 3.5290 2.4363 -3.0958 36 1 2.6104 -0.3664 -6.1740 37 1 4.1179 -2.0148 -5.1476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000239367315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:36 Heat of formation + Delta-G solvation = -171.325921 kcal Electronic energy + Delta-G solvation = -30272.910650 eV Core-core repulsion = 25322.388776 eV Total energy + Delta-G solvation = -4950.521874 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.089 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.37966 -49.17476 -47.91550 -47.80865 -40.25049 -38.50051 -36.90846 -35.39937 -33.04498 -32.00041 -31.81189 -30.94885 -27.49955 -26.13784 -24.79720 -23.97326 -23.08076 -22.08872 -19.75861 -18.71179 -18.68613 -18.10698 -17.83374 -17.59470 -16.74334 -16.67399 -16.43034 -16.00208 -15.60028 -14.80655 -14.73775 -14.72379 -14.67866 -14.31850 -14.26882 -14.24758 -14.01958 -13.97807 -13.88501 -13.65891 -13.47584 -13.14927 -12.78478 -12.57766 -12.43710 -12.28156 -12.13885 -11.85864 -11.63481 -11.36731 -11.04101 -10.95302 -10.73064 -10.28684 -9.80534 -9.60241 -9.39679 -9.23610 -8.54662 -8.02125 -6.16573 -4.22154 0.33829 0.57496 2.35972 2.63659 2.72733 2.80088 3.17644 3.24236 3.32450 3.33640 3.38932 3.47364 3.74537 3.81693 4.04273 4.17112 4.30053 4.34813 4.44637 4.68566 4.79264 4.95241 5.07351 5.17505 5.20487 5.31436 5.38110 5.53143 5.59610 5.64334 5.74431 5.97172 6.21984 6.77344 7.19919 7.29512 7.55685 7.78396 8.01308 8.06484 8.57827 8.82952 9.43981 10.91589 Molecular weight = 344.09amu Principal moments of inertia in cm(-1) A = 0.009474 B = 0.004065 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.866500 B = 6886.022590 C = 7236.604021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.216 3.784 3 C -0.048 4.048 4 C 0.107 3.893 5 N -0.585 5.585 6 C 0.243 3.757 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.553 3.447 16 O -0.510 6.510 17 C -0.151 4.151 18 C -0.012 4.012 19 C -0.203 4.203 20 C 0.513 3.487 21 F -0.177 7.177 22 F -0.173 7.173 23 F -0.173 7.173 24 C -0.033 4.033 25 C -0.159 4.159 26 C 0.173 3.827 27 F -0.114 7.114 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.264 0.736 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.997 -7.899 -14.793 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.102 4.102 3 C -0.090 4.090 4 C -0.019 4.019 5 N -0.315 5.315 6 C 0.125 3.875 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.529 5.529 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.338 3.662 16 O -0.386 6.386 17 C -0.156 4.156 18 C -0.031 4.031 19 C -0.204 4.204 20 C 0.458 3.542 21 F -0.159 7.159 22 F -0.154 7.154 23 F -0.154 7.154 24 C -0.051 4.051 25 C -0.178 4.178 26 C 0.153 3.847 27 F -0.092 7.092 28 H 0.123 0.877 29 H 0.138 0.862 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.909 -7.919 -14.539 19.295 hybrid contribution 0.616 1.085 0.014 1.248 sum -9.293 -6.834 -14.525 18.548 Atomic orbital electron populations 1.81205 1.12922 1.08557 1.09129 1.29026 0.95027 0.93196 0.92966 1.19815 0.81549 1.01527 1.06077 1.21552 0.81956 0.96555 1.01822 1.48168 1.05092 1.62150 1.16139 1.19470 0.92820 0.95125 0.80055 1.21420 1.37233 0.92940 1.05645 0.92194 1.24906 0.95126 0.98678 0.95091 1.69923 1.37989 1.36108 1.08896 0.86454 0.78179 0.84834 0.78050 1.19715 1.20895 1.20811 1.17754 0.87142 0.78769 0.82571 1.90840 1.13006 1.52039 1.82682 1.20330 1.01225 0.94101 0.99897 1.20953 0.90507 0.99574 0.92066 1.19898 1.04162 0.96324 1.00041 1.18127 0.79361 0.80395 0.76278 1.93164 1.85850 1.85069 1.51775 1.93254 1.62200 1.92875 1.67075 1.93253 1.77548 1.52286 1.92299 1.20938 0.94941 0.90515 0.98680 1.21085 0.99081 1.01979 0.95621 1.17821 0.89086 0.85968 0.91837 1.91610 1.68635 1.64988 1.83972 0.87733 0.86203 0.88297 0.90413 0.94214 0.93122 0.92584 0.82901 0.83176 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.54 18.54 42.15 0.78 -5.75 16 2 C 0.22 2.67 15.43 -20.76 -0.32 2.35 16 3 C -0.05 -0.53 6.03 -29.51 -0.18 -0.70 16 4 C 0.11 1.42 5.19 -4.04 -0.02 1.40 16 5 N -0.58 -10.43 2.46 -176.23 -0.43 -10.87 16 6 C 0.24 5.55 5.23 -5.19 -0.03 5.53 16 7 C -0.53 -13.71 9.39 -34.44 -0.32 -14.04 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 11 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.55 10.18 6.84 -12.40 -0.08 10.10 16 16 O -0.51 -11.78 16.46 5.30 0.09 -11.69 16 17 C -0.15 -2.10 4.90 -104.91 -0.51 -2.62 16 18 C -0.01 -0.15 7.02 -39.19 -0.28 -0.42 16 19 C -0.20 -2.04 5.37 -104.68 -0.56 -2.60 16 20 C 0.51 5.26 3.31 36.01 0.12 5.38 16 21 F -0.18 -1.67 15.96 2.25 0.04 -1.63 16 22 F -0.17 -1.93 17.23 2.25 0.04 -1.89 16 23 F -0.17 -1.97 17.24 2.25 0.04 -1.93 16 24 C -0.03 -0.26 9.42 -39.51 -0.37 -0.64 16 25 C -0.16 -1.36 10.01 -39.56 -0.40 -1.76 16 26 C 0.17 2.11 7.28 -38.96 -0.28 1.82 16 27 F -0.11 -1.59 16.69 2.25 0.04 -1.55 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.10 1.35 8.11 -51.93 -0.42 0.93 16 31 H 0.08 0.90 4.43 -51.93 -0.23 0.67 16 32 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.33 7.35 -51.93 -0.38 0.95 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.15 1.80 7.59 -52.49 -0.40 1.41 16 36 H 0.15 0.84 7.14 -52.49 -0.37 0.46 16 37 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -31.65 352.74 -4.76 -36.40 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: -3.04 Total: -3.49 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -3.34 Total: 5.43 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 1.08 Total: -40.64 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.15 Total: -7.01 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.65 -4.76 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000239367315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.923 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds