Wall clock time and date at job start Tue Mar 31 2020 07:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99588 * 2 1 4 4 H 1.48500 * 109.46817 * 269.99394 * 3 2 1 5 5 H 1.48492 * 109.47489 * 29.99624 * 3 2 1 6 6 H 1.48497 * 109.46827 * 149.99974 * 3 2 1 7 7 C 1.37868 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00268 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00111 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.90140 * 300.50156 * 9 7 2 11 11 C 1.54762 * 109.83605 * 179.55454 * 9 7 2 12 12 C 1.54383 * 101.40415 * 219.90380 * 11 9 7 13 13 H 1.09005 * 109.21872 * 280.44242 * 12 11 9 14 14 C 1.53946 * 101.54045 * 36.18438 * 12 11 9 15 15 H 1.09002 * 111.63747 * 199.56797 * 14 12 11 16 16 C 1.53080 * 111.76384 * 73.80611 * 14 12 11 17 17 C 1.52595 * 111.00665 * 52.86140 * 16 14 12 18 18 C 1.53322 * 108.41589 * 297.61030 * 17 16 14 19 19 C 1.51569 * 111.86912 * 157.43497 * 12 11 9 20 20 H 1.08999 * 108.15301 * 175.36977 * 19 12 11 21 21 N 1.46900 * 109.03914 * 56.95364 * 19 12 11 22 22 C 1.46897 * 111.00400 * 151.80138 * 21 19 12 23 23 C 1.50694 * 109.47626 * 180.02562 * 22 21 19 24 24 C 1.38284 * 119.98411 * 259.73004 * 23 22 21 25 25 C 1.38216 * 120.14314 * 179.79067 * 24 23 22 26 26 C 1.38275 * 120.14088 * 0.44385 * 25 24 23 27 27 C 1.38499 * 120.03266 * 359.79708 * 26 25 24 28 28 C 1.38499 * 119.98591 * 79.99942 * 23 22 21 29 29 O 1.36496 * 131.54565 * 0.02562 * 28 23 22 30 30 C 1.43983 * 105.49197 * 162.71778 * 29 28 23 31 31 O 1.36503 * 131.54420 * 179.97438 * 27 26 25 32 32 O 1.43434 * 109.83598 * 61.45317 * 9 7 2 33 33 H 0.96996 * 120.00044 * 0.02562 * 1 2 3 34 34 H 1.09001 * 111.03934 * 101.87048 * 11 9 7 35 35 H 1.09002 * 111.06917 * 337.94860 * 11 9 7 36 36 H 1.08994 * 109.17102 * 173.25233 * 16 14 12 37 37 H 1.09002 * 109.16663 * 292.52200 * 16 14 12 38 38 H 1.08994 * 109.67510 * 57.34141 * 17 16 14 39 39 H 1.08999 * 109.67219 * 177.87894 * 17 16 14 40 40 H 1.09007 * 109.73412 * 183.67767 * 18 17 16 41 41 H 1.08995 * 109.73760 * 304.37431 * 18 17 16 42 42 H 1.00895 * 111.00156 * 275.75893 * 21 19 12 43 43 H 1.09002 * 109.47166 * 300.00397 * 22 21 19 44 44 H 1.09007 * 109.47106 * 59.99855 * 22 21 19 45 45 H 1.08000 * 119.92893 * 359.97310 * 24 23 22 46 46 H 1.08000 * 119.92346 * 180.25877 * 25 24 23 47 47 H 1.07998 * 119.98244 * 179.76817 * 26 25 24 48 48 H 1.09004 * 110.57616 * 268.56688 * 30 29 28 49 49 H 1.09003 * 110.57072 * 145.69273 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6148 -2.5602 0.8834 11 6 2.2494 -3.6818 -0.0101 12 6 1.5530 -4.6603 -0.9801 13 1 0.7601 -5.1879 -0.4498 14 6 0.9344 -3.6912 -2.0039 15 1 0.1287 -4.1620 -2.5672 16 6 1.9949 -3.0926 -2.9315 17 6 2.8353 -4.1885 -3.5806 18 6 3.5749 -4.9507 -2.4748 19 6 2.5331 -5.6398 -1.5943 20 1 1.9696 -6.3496 -2.1998 21 7 3.2205 -6.3676 -0.5192 22 6 3.6367 -7.7024 -0.9695 23 6 4.3361 -8.4175 0.1576 24 6 5.7174 -8.4727 0.1895 25 6 6.3624 -9.1240 1.2240 26 6 5.6289 -9.7310 2.2267 27 6 4.2450 -9.6841 2.1987 28 6 3.5949 -9.0240 1.1582 29 8 2.2477 -9.1192 1.3556 30 6 2.0725 -10.1894 2.3028 31 8 3.3045 -10.1919 3.0478 32 8 0.4499 -2.5986 -1.1850 33 1 -0.4850 0.8400 -0.0004 34 1 2.3482 -4.1194 0.9833 35 1 3.2201 -3.3717 -0.3970 36 1 1.5020 -2.5110 -3.7104 37 1 2.6469 -2.4373 -2.3539 38 1 2.1868 -4.8729 -4.1274 39 1 3.5571 -3.7411 -4.2639 40 1 4.2330 -5.6974 -2.9193 41 1 4.1602 -4.2535 -1.8753 42 1 4.0082 -5.8411 -0.1723 43 1 2.7592 -8.2736 -1.2727 44 1 4.3168 -7.6048 -1.8158 45 1 6.2937 -8.0033 -0.5941 46 1 7.4415 -9.1613 1.2476 47 1 6.1354 -10.2425 3.0319 48 1 1.9353 -11.1394 1.7863 49 1 1.2276 -9.9843 2.9603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253370128.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:18 Heat of formation + Delta-G solvation = -82.507439 kcal Electronic energy + Delta-G solvation = -31112.384305 eV Core-core repulsion = 27004.978462 eV Total energy + Delta-G solvation = -4107.405844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.31926 -39.75182 -38.33396 -36.60479 -36.15362 -34.07418 -32.34099 -31.73312 -30.18887 -30.11917 -28.48297 -27.75631 -25.99555 -25.18309 -24.40311 -23.10579 -21.92525 -21.72898 -21.26246 -20.08328 -18.42383 -18.24238 -17.76690 -17.35822 -16.50271 -16.34228 -15.76689 -15.38756 -14.86530 -14.81623 -14.53788 -14.37335 -14.31020 -13.91196 -13.82884 -13.46577 -13.13306 -13.09644 -13.02784 -12.87720 -12.60315 -12.45306 -12.03086 -11.92185 -11.68663 -11.32487 -11.16360 -11.09091 -11.03834 -10.87636 -10.80711 -10.60763 -10.35693 -10.16898 -9.93919 -9.61539 -9.38512 -8.95404 -8.94498 -8.43744 -8.24581 -8.18705 -7.73067 -5.89311 -4.02225 0.94466 0.98361 2.60399 3.29195 3.32673 3.34662 3.41271 3.43524 4.18736 4.33627 4.45697 4.49229 4.62975 4.78763 4.87582 4.91939 4.97498 4.99083 5.03731 5.20842 5.22908 5.34573 5.38064 5.51160 5.55467 5.66587 5.76735 5.82236 5.85033 5.87186 5.91212 6.00887 6.06512 6.09507 6.17902 6.22042 6.24693 6.31892 6.41347 6.45862 6.61856 6.76580 6.85713 6.90204 6.95325 7.02124 7.19096 7.29020 7.52410 7.77868 7.97563 8.39876 8.68135 9.13031 9.68322 11.17255 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.002740 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.826078 B =10217.079720 C =10592.121212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.078 3.922 3 Si 0.884 3.116 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.205 3.795 10 H 0.036 0.964 11 C -0.129 4.129 12 C -0.104 4.104 13 H 0.075 0.925 14 C 0.083 3.917 15 H 0.073 0.927 16 C -0.135 4.135 17 C -0.112 4.112 18 C -0.146 4.146 19 C 0.109 3.891 20 H 0.068 0.932 21 N -0.675 5.675 22 C 0.102 3.898 23 C -0.065 4.065 24 C -0.105 4.105 25 C -0.113 4.113 26 C -0.103 4.103 27 C 0.025 3.975 28 C 0.062 3.938 29 O -0.293 6.293 30 C 0.211 3.789 31 O -0.311 6.311 32 O -0.360 6.360 33 H 0.259 0.741 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.343 0.657 43 H 0.079 0.921 44 H 0.041 0.959 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.132 0.868 48 H 0.081 0.919 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.344 -22.375 -1.441 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.127 4.127 3 Si 0.712 3.288 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.074 0.926 9 C 0.150 3.850 10 H 0.053 0.947 11 C -0.167 4.167 12 C -0.123 4.123 13 H 0.093 0.907 14 C 0.023 3.977 15 H 0.091 0.909 16 C -0.173 4.173 17 C -0.150 4.150 18 C -0.185 4.185 19 C 0.000 4.000 20 H 0.086 0.914 21 N -0.306 5.306 22 C -0.026 4.026 23 C -0.067 4.067 24 C -0.124 4.124 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.019 4.019 28 C 0.016 3.984 29 O -0.208 6.208 30 C 0.099 3.901 31 O -0.228 6.228 32 O -0.280 6.280 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.162 0.838 43 H 0.098 0.902 44 H 0.059 0.941 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.150 0.850 48 H 0.098 0.902 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.205 -22.311 -1.033 24.157 hybrid contribution 1.165 0.944 -0.410 1.554 sum 10.370 -21.367 -1.443 23.794 Atomic orbital electron populations 1.70042 1.05932 1.26205 1.47898 1.25037 0.94660 0.98949 0.94028 0.86748 0.80012 0.83982 0.78083 1.20664 1.21235 1.19911 1.21376 0.92468 0.90900 1.52935 0.92597 1.20324 0.87904 0.91796 0.85001 0.94652 1.23019 0.99826 0.95910 0.97924 1.22078 0.97386 0.95569 0.97268 0.90679 1.22734 0.94302 0.88378 0.92250 0.90940 1.21995 0.98420 0.97594 0.99257 1.21439 0.98560 0.98065 0.96967 1.22272 0.98330 0.99600 0.98285 1.21043 0.94163 0.94616 0.90228 0.91412 1.60592 1.31873 1.02497 1.35589 1.20810 0.98383 0.90833 0.92611 1.18909 0.92361 1.00242 0.95156 1.20889 0.92271 0.99912 0.99334 1.20859 1.00023 0.98308 0.93917 1.20054 0.88761 1.02597 1.00758 1.19854 0.91816 1.00102 0.90139 1.19541 0.82656 1.00083 0.96080 1.87491 1.19906 1.52498 1.60912 1.25648 0.88107 0.90576 0.85802 1.87356 1.17721 1.81161 1.36512 1.89053 1.56180 1.48632 1.34095 0.93157 0.92276 0.92035 0.92546 0.89902 0.92616 0.92543 0.92780 0.91124 0.83787 0.90219 0.94132 0.84722 0.84568 0.84963 0.90151 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.25 12.92 55.43 0.72 -25.53 16 2 C 0.08 2.26 5.41 -17.82 -0.10 2.16 16 3 Si 0.88 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.54 -15.12 8.13 -34.44 -0.28 -15.40 16 8 H 0.06 1.53 7.52 -52.49 -0.39 1.13 16 9 C 0.21 5.35 3.07 -26.95 -0.08 5.27 16 10 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 11 C -0.13 -2.67 4.85 -25.08 -0.12 -2.79 16 12 C -0.10 -1.88 2.79 -90.13 -0.25 -2.13 16 13 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 14 C 0.08 1.67 4.06 -26.20 -0.11 1.56 16 15 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 16 C -0.13 -2.52 5.10 -26.90 -0.14 -2.65 16 17 C -0.11 -1.59 5.93 -26.77 -0.16 -1.75 16 18 C -0.15 -1.94 5.01 -26.66 -0.13 -2.07 16 19 C 0.11 1.55 2.12 -68.53 -0.15 1.41 16 20 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 21 N -0.68 -9.08 5.84 -108.86 -0.64 -9.72 16 22 C 0.10 1.15 5.59 -4.98 -0.03 1.12 16 23 C -0.07 -0.73 5.40 -104.51 -0.56 -1.30 16 24 C -0.11 -0.94 9.66 -39.57 -0.38 -1.33 16 25 C -0.11 -0.92 10.04 -39.58 -0.40 -1.32 16 26 C -0.10 -0.97 10.06 -39.47 -0.40 -1.37 16 27 C 0.03 0.30 7.15 -39.08 -0.28 0.02 16 28 C 0.06 0.78 6.85 -39.08 -0.27 0.51 16 29 O -0.29 -3.80 11.39 -45.68 -0.52 -4.32 16 30 C 0.21 1.96 8.89 101.05 0.90 2.86 16 31 O -0.31 -3.62 11.40 -45.70 -0.52 -4.14 16 32 O -0.36 -9.49 10.11 -35.23 -0.36 -9.84 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.25 5.65 -51.93 -0.29 0.96 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.78 6.51 -51.93 -0.34 1.44 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.61 7.45 -51.93 -0.39 0.22 16 41 H 0.07 1.03 6.73 -51.93 -0.35 0.68 16 42 H 0.34 4.61 8.24 -39.29 -0.32 4.29 16 43 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 44 H 0.04 0.39 7.28 -51.92 -0.38 0.01 16 45 H 0.13 0.92 8.03 -52.49 -0.42 0.50 16 46 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 47 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -33.06 383.55 -10.98 -44.04 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.49 Total: 4.27 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -2.93 Total: -17.22 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.08 Total: -35.25 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -1.40 Total: -18.30 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.06 -10.98 -44.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253370128.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.466 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds