Wall clock time and date at job start Tue Mar 31 2020 07:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00228 * 2 1 4 4 H 1.48495 * 109.47323 * 240.00045 * 3 2 1 5 5 H 1.48496 * 109.47092 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46900 * 120.00415 * 3 2 1 7 7 C 1.37880 * 119.99551 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99510 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00324 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.89672 * 300.36108 * 9 7 2 11 11 C 1.55075 * 110.07316 * 179.16745 * 9 7 2 12 12 C 1.53241 * 103.07268 * 238.88330 * 11 9 7 13 13 H 1.08992 * 111.30095 * 268.87965 * 12 11 9 14 14 C 1.55424 * 100.76720 * 26.61868 * 12 11 9 15 15 H 1.08999 * 109.67423 * 72.39015 * 14 12 11 16 16 C 1.51472 * 107.35775 * 191.23527 * 14 12 11 17 17 C 1.53768 * 107.35325 * 295.46586 * 16 14 12 18 18 C 1.52567 * 111.40149 * 57.44161 * 17 16 14 19 19 C 1.51855 * 115.63397 * 141.34572 * 12 11 9 20 20 H 1.08998 * 109.89057 * 64.61552 * 19 12 11 21 21 N 1.46903 * 109.89462 * 303.58169 * 19 12 11 22 22 C 1.46893 * 110.99924 * 154.99667 * 21 19 12 23 23 C 1.50706 * 109.47176 * 179.97438 * 22 21 19 24 24 C 1.38279 * 119.98570 * 259.73251 * 23 22 21 25 25 C 1.38216 * 120.14008 * 179.79257 * 24 23 22 26 26 C 1.38278 * 120.14425 * 0.44205 * 25 24 23 27 27 C 1.38508 * 120.02610 * 359.79562 * 26 25 24 28 28 C 1.38501 * 119.98009 * 80.00212 * 23 22 21 29 29 O 1.36497 * 131.54803 * 0.02562 * 28 23 22 30 30 C 1.43985 * 105.49170 * 162.71707 * 29 28 23 31 31 O 1.36501 * 131.53258 * 179.97438 * 27 26 25 32 32 O 1.42318 * 102.67892 * 315.83937 * 14 12 11 33 33 H 0.97002 * 119.99868 * 359.97438 * 1 2 3 34 34 H 1.08996 * 110.69691 * 120.48634 * 11 9 7 35 35 H 1.08996 * 110.69566 * 357.28001 * 11 9 7 36 36 H 1.09002 * 109.88286 * 54.92400 * 16 14 12 37 37 H 1.09001 * 109.88542 * 175.92480 * 16 14 12 38 38 H 1.09000 * 109.09301 * 177.94101 * 17 16 14 39 39 H 1.09006 * 109.08752 * 296.95007 * 17 16 14 40 40 H 1.09004 * 109.07456 * 184.74427 * 18 17 16 41 41 H 1.08995 * 109.07721 * 65.77999 * 18 17 16 42 42 H 1.00904 * 110.99923 * 31.04749 * 21 19 12 43 43 H 1.09001 * 109.46739 * 60.00281 * 22 21 19 44 44 H 1.09000 * 109.47767 * 300.00540 * 22 21 19 45 45 H 1.07997 * 119.93114 * 359.97438 * 24 23 22 46 46 H 1.08001 * 119.92638 * 180.26495 * 25 24 23 47 47 H 1.08000 * 119.98494 * 179.77221 * 26 25 24 48 48 H 1.08993 * 110.57154 * 268.56319 * 30 29 28 49 49 H 1.08998 * 110.69893 * 145.75227 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6164 -2.5620 0.8824 11 6 2.2460 -3.6884 -0.0233 12 6 1.8613 -4.4391 -1.3026 13 1 1.1160 -5.2085 -1.1013 14 6 1.2544 -3.2834 -2.1461 15 1 2.0503 -2.6228 -2.4899 16 6 0.5666 -3.9094 -3.3417 17 6 1.6533 -4.5864 -4.1934 18 6 2.4304 -5.6207 -3.3848 19 6 3.0191 -5.0076 -2.1041 20 1 3.5295 -5.7765 -1.5240 21 7 3.9614 -3.9352 -2.4506 22 6 5.3102 -4.4719 -2.6752 23 6 6.2468 -3.3453 -3.0283 24 6 6.5875 -3.1180 -4.3490 25 6 7.4428 -2.0829 -4.6769 26 6 7.9688 -1.2760 -3.6847 27 6 7.6357 -1.5010 -2.3593 28 6 6.7703 -2.5416 -2.0292 29 8 6.6027 -2.5562 -0.6746 30 6 7.6903 -1.7759 -0.1441 31 8 8.0094 -0.8637 -1.2114 32 8 0.4399 -2.6003 -1.1998 33 1 -0.4850 0.8401 0.0004 34 1 2.1073 -4.3227 0.8521 35 1 3.2736 -3.3297 -0.0814 36 1 -0.1573 -4.6520 -3.0061 37 1 0.0632 -3.1387 -3.9254 38 1 1.1836 -5.0789 -5.0449 39 1 2.3444 -3.8268 -4.5589 40 1 3.2419 -6.0148 -3.9967 41 1 1.7612 -6.4373 -3.1139 42 1 3.9710 -3.2188 -1.7402 43 1 5.2833 -5.1915 -3.4935 44 1 5.6605 -4.9656 -1.7687 45 1 6.1820 -3.7487 -5.1263 46 1 7.7032 -1.9058 -5.7100 47 1 8.6398 -0.4703 -3.9435 48 1 8.5444 -2.4139 0.0827 49 1 7.3748 -1.2298 0.7450 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253370129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:23 Heat of formation + Delta-G solvation = -76.665130 kcal Electronic energy + Delta-G solvation = -32267.684411 eV Core-core repulsion = 28160.531909 eV Total energy + Delta-G solvation = -4107.152502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.15596 -39.79809 -38.10842 -36.43556 -36.00470 -34.14389 -32.30075 -31.74566 -30.08096 -29.93733 -28.54983 -27.79977 -25.84399 -25.22185 -24.37283 -22.93106 -21.61382 -21.41022 -21.00718 -19.96955 -18.71005 -18.07331 -17.64906 -17.17728 -16.61676 -16.24828 -15.62448 -15.02850 -14.85384 -14.65805 -14.50813 -14.32442 -14.19239 -13.89718 -13.80961 -13.56497 -12.98971 -12.92513 -12.84771 -12.70828 -12.42931 -12.26778 -12.12886 -11.73104 -11.61326 -11.37759 -11.29114 -10.96958 -10.90032 -10.87174 -10.69024 -10.45910 -10.29441 -10.12104 -10.00744 -9.61154 -9.12276 -9.06054 -8.79429 -8.43653 -8.15287 -8.05864 -7.71998 -5.91138 -4.04932 1.15216 1.15632 2.76921 3.36113 3.40632 3.44415 3.45327 3.50950 4.37743 4.48359 4.57398 4.61775 4.77442 4.87817 4.93404 5.04605 5.11940 5.16681 5.18815 5.32300 5.38927 5.42169 5.51334 5.61138 5.67102 5.68836 5.77967 5.86624 5.89777 5.98297 6.04552 6.08856 6.17681 6.26202 6.27177 6.34025 6.37858 6.43321 6.48322 6.53186 6.62835 6.73798 6.75558 6.83987 7.06170 7.11759 7.27611 7.36524 7.71816 7.74281 7.94270 8.33245 8.63133 9.06562 9.66750 11.15039 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008218 B = 0.005384 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3406.255128 B = 5199.192104 C = 7326.811708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.081 3.919 3 Si 0.884 3.116 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.208 3.792 10 H 0.049 0.951 11 C -0.141 4.141 12 C -0.137 4.137 13 H 0.075 0.925 14 C 0.087 3.913 15 H 0.069 0.931 16 C -0.107 4.107 17 C -0.103 4.103 18 C -0.101 4.101 19 C 0.102 3.898 20 H 0.039 0.961 21 N -0.673 5.673 22 C 0.102 3.898 23 C -0.058 4.058 24 C -0.093 4.093 25 C -0.113 4.113 26 C -0.105 4.105 27 C 0.030 3.970 28 C 0.042 3.958 29 O -0.300 6.300 30 C 0.214 3.786 31 O -0.310 6.310 32 O -0.358 6.358 33 H 0.260 0.740 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.358 0.642 43 H 0.081 0.919 44 H 0.037 0.963 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.132 0.868 48 H 0.080 0.920 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.988 -10.045 -7.783 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.124 4.124 3 Si 0.711 3.289 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.073 0.927 9 C 0.152 3.848 10 H 0.067 0.933 11 C -0.179 4.179 12 C -0.156 4.156 13 H 0.094 0.906 14 C 0.027 3.973 15 H 0.086 0.914 16 C -0.145 4.145 17 C -0.141 4.141 18 C -0.139 4.139 19 C -0.007 4.007 20 H 0.057 0.943 21 N -0.309 5.309 22 C -0.027 4.027 23 C -0.059 4.059 24 C -0.112 4.112 25 C -0.131 4.131 26 C -0.124 4.124 27 C -0.014 4.014 28 C -0.003 4.003 29 O -0.216 6.216 30 C 0.102 3.898 31 O -0.226 6.226 32 O -0.277 6.277 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.181 0.819 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.155 0.845 46 H 0.154 0.846 47 H 0.149 0.851 48 H 0.098 0.902 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.357 -9.744 -8.252 19.214 hybrid contribution 1.061 0.830 1.293 1.868 sum 15.418 -8.914 -6.958 19.120 Atomic orbital electron populations 1.70030 1.05916 1.26403 1.47562 1.24999 0.94629 0.98908 0.93879 0.86818 0.79818 0.83574 0.78691 1.20086 1.21246 1.20305 1.21401 0.92566 0.90914 1.53473 0.92664 1.20615 0.87898 0.91041 0.85207 0.93342 1.22850 1.01274 0.98241 0.95528 1.22719 0.97288 0.99228 0.96391 0.90643 1.22175 0.93513 0.91084 0.90504 0.91374 1.21327 0.97451 0.99136 0.96549 1.21326 0.97322 0.98338 0.97091 1.21501 0.98675 0.97562 0.96165 1.21226 0.92602 0.92159 0.94748 0.94298 1.60655 1.04722 1.13156 1.52350 1.20825 0.88053 0.93505 1.00329 1.18884 0.99227 0.96987 0.90819 1.20813 0.97776 0.98325 0.94269 1.20870 0.97996 0.95441 0.98814 1.20044 1.02435 1.01858 0.88025 1.19811 0.99136 0.93319 0.89178 1.19685 0.99032 0.97542 0.84058 1.87430 1.47803 1.70358 1.16023 1.25613 0.87750 0.85390 0.91067 1.87360 1.81097 1.40428 1.13730 1.88952 1.38294 1.76883 1.23607 0.93042 0.93132 0.91883 0.92573 0.91986 0.93073 0.91018 0.92731 0.92572 0.81926 0.90089 0.94535 0.84508 0.84623 0.85050 0.90201 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.24 12.92 55.43 0.72 -25.53 16 2 C 0.08 2.36 5.41 -17.82 -0.10 2.26 16 3 Si 0.88 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.55 -15.43 8.68 -34.44 -0.30 -15.72 16 8 H 0.06 1.54 7.37 -52.49 -0.39 1.15 16 9 C 0.21 5.44 3.31 -26.78 -0.09 5.35 16 10 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 11 C -0.14 -2.96 6.03 -25.51 -0.15 -3.11 16 12 C -0.14 -2.54 2.51 -89.79 -0.23 -2.76 16 13 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 14 C 0.09 1.85 2.57 -26.22 -0.07 1.79 16 15 H 0.07 1.61 6.64 -51.93 -0.34 1.26 16 16 C -0.11 -1.91 5.97 -27.10 -0.16 -2.07 16 17 C -0.10 -1.49 5.64 -26.55 -0.15 -1.64 16 18 C -0.10 -1.34 5.49 -26.58 -0.15 -1.48 16 19 C 0.10 1.56 2.62 -67.92 -0.18 1.38 16 20 H 0.04 0.56 7.81 -51.93 -0.41 0.16 16 21 N -0.67 -10.69 4.77 -108.22 -0.52 -11.20 16 22 C 0.10 1.34 5.63 -4.98 -0.03 1.31 16 23 C -0.06 -0.79 5.40 -104.51 -0.56 -1.35 16 24 C -0.09 -1.05 9.66 -39.57 -0.38 -1.43 16 25 C -0.11 -1.17 10.04 -39.57 -0.40 -1.57 16 26 C -0.10 -1.25 10.06 -39.47 -0.40 -1.65 16 27 C 0.03 0.43 7.15 -39.08 -0.28 0.16 16 28 C 0.04 0.64 6.84 -39.09 -0.27 0.37 16 29 O -0.30 -4.70 11.39 -45.68 -0.52 -5.22 16 30 C 0.21 2.60 8.89 101.05 0.90 3.50 16 31 O -0.31 -4.53 11.40 -45.69 -0.52 -5.05 16 32 O -0.36 -9.60 10.69 -35.23 -0.38 -9.97 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.33 5.67 -51.93 -0.29 1.04 16 36 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 40 H 0.05 0.63 7.61 -51.93 -0.40 0.24 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.36 6.80 5.98 -39.29 -0.23 6.56 16 43 H 0.08 0.90 7.46 -51.93 -0.39 0.51 16 44 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 45 H 0.14 1.22 8.03 -52.49 -0.42 0.80 16 46 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 47 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 48 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.13 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 384.14 15.07 5.79 5.79 Total: -1.00 -32.92 384.14 -10.92 -43.84 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.48 Total: 6.87 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.98 Total: -16.68 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.20 Total: -36.73 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -1.42 Total: -20.24 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.92 -10.92 -43.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253370129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.829 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds