Wall clock time and date at job start Tue Mar 31 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47023 * 2 1 4 4 C 1.35899 * 116.99623 * 179.97438 * 3 2 1 5 5 C 1.38808 * 120.02304 * 0.02562 * 4 3 2 6 6 C 1.38171 * 120.08328 * 179.97438 * 5 4 3 7 7 C 1.38166 * 120.12659 * 359.72527 * 6 5 4 8 8 C 1.38891 * 120.03715 * 0.55586 * 7 6 5 9 9 N 1.39925 * 120.04135 * 179.71883 * 8 7 6 10 10 C 1.34772 * 120.00313 * 214.81908 * 9 8 7 11 11 O 1.21601 * 119.99883 * 355.38540 * 10 9 8 12 12 N 1.34779 * 120.00376 * 175.38372 * 10 9 8 13 13 C 1.40185 * 119.99711 * 180.02562 * 12 10 9 14 14 C 1.40407 * 125.97708 * 0.02562 * 13 12 10 15 15 C 1.35246 * 107.86651 * 180.02562 * 14 13 12 16 16 C 1.50696 * 126.06761 * 180.02562 * 15 14 13 17 17 N 1.34963 * 107.85739 * 0.02562 * 15 14 13 18 18 C 1.46502 * 125.97251 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47031 * 270.02050 * 18 17 15 20 20 H 1.07995 * 119.99883 * 359.97438 * 19 18 17 21 21 C 1.37872 * 119.99879 * 180.02562 * 19 18 17 22 22 N 1.31523 * 120.00032 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00363 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47033 * 90.00433 * 23 21 19 25 25 H 1.48500 * 109.47022 * 210.00593 * 23 21 19 26 26 H 1.48500 * 109.46680 * 330.00088 * 23 21 19 27 27 N 1.31215 * 125.96743 * 180.02562 * 13 12 10 28 28 C 1.38587 * 120.01931 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47118 * 299.99924 * 1 2 3 30 30 H 1.08997 * 109.47072 * 60.00018 * 1 2 3 31 31 H 1.08996 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47456 * 239.99712 * 2 1 3 33 33 H 1.09007 * 109.47157 * 119.99880 * 2 1 3 34 34 H 1.07996 * 119.96117 * 0.02562 * 5 4 3 35 35 H 1.08004 * 119.93429 * 180.02562 * 6 5 4 36 36 H 1.07992 * 119.98272 * 180.29133 * 7 6 5 37 37 H 0.97003 * 120.00154 * 34.82124 * 9 8 7 38 38 H 0.96992 * 119.99972 * 0.02562 * 12 10 9 39 39 H 1.07995 * 126.06199 * 0.02984 * 14 13 12 40 40 H 1.09003 * 109.47102 * 269.99657 * 16 15 14 41 41 H 1.08997 * 109.47645 * 29.99468 * 16 15 14 42 42 H 1.09003 * 109.47102 * 150.00142 * 16 15 14 43 43 H 1.09001 * 109.47477 * 30.01899 * 18 17 15 44 44 H 1.08998 * 109.47631 * 150.02014 * 18 17 15 45 45 H 0.97001 * 120.00071 * 179.97438 * 22 21 19 46 46 H 1.07999 * 120.06275 * 0.04273 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1996 0.4248 0.0005 6 6 5.5696 0.6043 0.0005 7 6 6.1019 1.8793 -0.0052 8 6 5.2602 2.9841 0.0007 9 7 5.7993 4.2754 0.0009 10 6 5.1776 5.2651 0.6720 11 8 4.1057 5.0568 1.2072 12 7 5.7440 6.4856 0.7502 13 6 5.0975 7.5148 1.4487 14 6 3.8636 7.4137 2.1110 15 6 3.5863 8.6191 2.6581 16 6 2.3605 8.9675 3.4623 17 7 4.6025 9.4543 2.3560 18 6 4.7072 10.8608 2.7523 19 6 4.0713 11.7287 1.6970 20 1 3.6335 11.2778 0.8189 21 6 4.0496 13.0985 1.8523 22 7 3.4951 13.8560 0.9311 23 14 4.8076 13.8786 3.3709 24 1 6.2383 14.1801 3.1109 25 1 4.0873 15.1366 3.6931 26 1 4.6997 12.9393 4.5161 27 7 5.5399 8.7411 1.5980 28 6 3.8838 2.8057 0.0000 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.7865 -0.5731 -0.0003 35 1 6.2255 -0.2537 0.0001 36 1 7.1730 2.0169 -0.0099 37 1 6.6204 4.4582 -0.4820 38 1 6.5988 6.6518 0.3231 39 1 3.2456 6.5302 2.1726 40 1 1.5792 9.3309 2.7948 41 1 2.0061 8.0806 3.9874 42 1 2.6094 9.7433 4.1865 43 1 4.1944 11.0097 3.7026 44 1 5.7577 11.1308 2.8601 45 1 3.4795 14.8197 1.0405 46 1 3.2272 3.6632 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275468749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:11 Heat of formation + Delta-G solvation = 50.093516 kcal Electronic energy + Delta-G solvation = -28699.146737 eV Core-core repulsion = 24591.669221 eV Total energy + Delta-G solvation = -4107.477516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.15931 -40.46931 -39.69703 -37.77193 -35.06098 -34.69905 -33.30088 -32.26854 -31.60891 -31.11642 -30.01146 -29.33326 -27.08905 -26.40896 -24.39341 -23.35065 -22.76359 -22.11537 -21.11693 -20.06345 -19.60939 -18.77380 -17.85729 -17.12087 -16.54838 -16.37739 -16.30969 -15.99292 -15.81361 -15.43294 -15.00065 -14.64249 -14.43841 -13.94464 -13.76185 -13.65316 -13.56270 -13.22605 -12.90414 -12.62205 -12.50351 -12.40696 -12.35762 -12.26825 -11.94240 -11.88583 -11.59457 -11.34001 -11.19418 -11.11944 -10.80109 -10.62681 -10.40128 -10.05439 -9.98150 -9.74923 -9.58547 -8.78262 -8.57939 -8.29171 -8.00131 -7.47486 -6.26169 -4.29273 1.07555 1.26262 2.15016 2.51817 2.93375 2.97353 3.15456 3.21283 3.22877 3.45097 3.56871 3.75937 4.13998 4.21371 4.53991 4.59847 4.74909 4.79055 4.92360 4.94763 5.02145 5.07450 5.24229 5.30302 5.36018 5.46931 5.58168 5.65434 5.72252 5.81379 5.96583 6.03287 6.05791 6.13879 6.17598 6.26082 6.36475 6.46334 6.47359 6.57320 6.64749 6.78007 6.97437 7.25889 7.28715 7.39611 7.75731 7.85316 8.31179 8.39523 8.55803 8.79364 9.28900 10.86302 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.002040 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.040852 B =13722.122796 C =14660.244170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.312 6.312 4 C 0.149 3.851 5 C -0.229 4.229 6 C -0.062 4.062 7 C -0.185 4.185 8 C 0.208 3.792 9 N -0.683 5.683 10 C 0.712 3.288 11 O -0.544 6.544 12 N -0.638 5.638 13 C 0.284 3.716 14 C -0.285 4.285 15 C 0.096 3.904 16 C -0.085 4.085 17 N -0.317 5.317 18 C 0.232 3.768 19 C -0.540 4.540 20 H 0.081 0.919 21 C 0.078 3.922 22 N -0.886 5.886 23 Si 0.874 3.126 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.264 1.264 27 N -0.319 5.319 28 C -0.154 4.154 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.410 0.590 38 H 0.409 0.591 39 H 0.163 0.837 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.269 0.731 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 -28.521 -1.046 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.226 6.226 4 C 0.103 3.897 5 C -0.248 4.248 6 C -0.081 4.081 7 C -0.206 4.206 8 C 0.112 3.888 9 N -0.331 5.331 10 C 0.412 3.588 11 O -0.417 6.417 12 N -0.287 5.287 13 C 0.031 3.969 14 C -0.316 4.316 15 C -0.035 4.035 16 C -0.143 4.143 17 N -0.099 5.099 18 C 0.113 3.887 19 C -0.578 4.578 20 H 0.099 0.901 21 C -0.126 4.126 22 N -0.523 5.523 23 Si 0.700 3.300 24 H -0.197 1.197 25 H -0.205 1.205 26 H -0.189 1.189 27 N -0.149 5.149 28 C -0.175 4.175 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.246 0.754 38 H 0.244 0.756 39 H 0.180 0.820 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.697 -27.346 -0.813 27.411 hybrid contribution 0.864 0.071 0.255 0.904 sum 2.561 -27.275 -0.558 27.401 Atomic orbital electron populations 1.21783 0.92718 1.02746 1.03808 1.22781 0.95953 0.82017 1.01259 1.86117 1.18940 1.29137 1.88372 1.18744 0.82381 0.93475 0.95149 1.21192 0.94379 0.97935 1.11340 1.20639 0.94231 0.96407 0.96822 1.20759 0.99396 0.91401 1.09045 1.17066 0.91424 0.82737 0.97537 1.42469 1.29384 1.07072 1.54161 1.15585 0.83846 0.79717 0.79678 1.90908 1.20311 1.80680 1.49793 1.41305 1.24342 1.07692 1.55397 1.18600 0.93469 0.87601 0.97278 1.21255 0.99657 0.99479 1.11206 1.21054 0.92471 0.90259 0.99695 1.20357 0.93214 1.02019 0.98753 1.48499 1.13193 1.10209 1.37984 1.20006 0.99044 0.72861 0.96832 1.21173 1.39025 0.91017 1.06621 0.90099 1.24814 0.94627 0.96697 0.96443 1.69878 1.43342 1.05317 1.33796 0.86887 0.80079 0.79648 0.83363 1.19659 1.20546 1.18881 1.77255 1.16266 1.02517 1.18864 1.20540 0.94168 0.96259 1.06503 0.91340 0.91428 0.90444 0.92098 0.92050 0.85628 0.85458 0.85544 0.75390 0.75626 0.81951 0.90032 0.90606 0.91114 0.93180 0.93663 0.92128 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.41 5.46 37.16 0.20 0.62 16 3 O -0.31 -3.65 10.13 -19.42 -0.20 -3.85 16 4 C 0.15 1.76 6.68 -39.24 -0.26 1.49 16 5 C -0.23 -2.10 9.04 -39.40 -0.36 -2.46 16 6 C -0.06 -0.51 10.03 -39.63 -0.40 -0.90 16 7 C -0.19 -1.64 9.96 -39.37 -0.39 -2.03 16 8 C 0.21 2.36 6.30 -83.72 -0.53 1.83 16 9 N -0.68 -7.22 5.34 -14.24 -0.08 -7.30 16 10 C 0.71 10.44 8.38 -86.92 -0.73 9.71 16 11 O -0.54 -9.76 10.90 5.28 0.06 -9.70 16 12 N -0.64 -9.61 5.45 -15.50 -0.08 -9.70 16 13 C 0.28 5.67 8.11 -154.37 -1.25 4.42 16 14 C -0.29 -5.80 9.52 -39.83 -0.38 -6.18 16 15 C 0.10 1.99 6.92 -82.28 -0.57 1.42 16 16 C -0.09 -1.43 10.11 36.00 0.36 -1.06 16 17 N -0.32 -7.33 3.59 -58.33 -0.21 -7.54 16 18 C 0.23 5.56 5.06 -5.19 -0.03 5.54 16 19 C -0.54 -15.11 9.94 -34.44 -0.34 -15.45 16 20 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 21 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 22 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 23 Si 0.87 20.14 27.47 -169.99 -4.67 15.47 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 27 N -0.32 -7.18 12.59 31.44 0.40 -6.78 16 28 C -0.15 -2.05 8.63 -39.25 -0.34 -2.39 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 33 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 34 H 0.13 0.86 6.29 -52.49 -0.33 0.53 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.41 2.78 8.84 -40.82 -0.36 2.42 16 38 H 0.41 4.74 8.84 -40.82 -0.36 4.38 16 39 H 0.16 3.25 5.91 -52.49 -0.31 2.94 16 40 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.15 7.07 -51.93 -0.37 0.78 16 43 H 0.05 1.12 6.10 -51.93 -0.32 0.80 16 44 H 0.05 1.08 7.57 -51.93 -0.39 0.68 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.15 2.39 6.22 -52.49 -0.33 2.06 16 LS Contribution 385.44 15.07 5.81 5.81 Total: -1.00 -35.20 385.44 -9.03 -44.23 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.11 Total: 8.83 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -4.72 Total: -3.93 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.80 Total: -56.86 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.14 Total: -13.55 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.67 Total: 15.47 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.20 -9.03 -44.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275468749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.328 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds