Wall clock time and date at job start Tue Mar 31 2020 07:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46894 * 109.46963 * 131.69186 * 3 2 1 5 5 C 1.46906 * 111.00160 * 294.29820 * 4 3 2 6 6 C 1.53238 * 109.33898 * 172.74579 * 5 4 3 7 7 N 1.47082 * 108.52051 * 53.83306 * 6 5 4 8 8 S 1.65605 * 120.87832 * 128.79106 * 7 6 5 9 9 O 1.42102 * 106.40240 * 28.46847 * 8 7 6 10 10 O 1.42101 * 106.39928 * 161.39098 * 8 7 6 11 11 N 1.65592 * 107.21815 * 274.92810 * 8 7 6 12 12 C 1.46503 * 120.00436 * 264.40291 * 11 8 7 13 13 C 1.50701 * 109.47494 * 94.99632 * 12 11 8 14 14 H 1.08000 * 119.99530 * 0.02562 * 13 12 11 15 15 C 1.37870 * 120.00065 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99807 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00135 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.47113 * 60.00035 * 17 15 13 19 19 H 1.48502 * 109.47275 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47448 * 300.00104 * 17 15 13 21 21 C 1.46501 * 120.00207 * 84.40036 * 11 8 7 22 22 C 1.52999 * 109.47422 * 95.06151 * 21 11 8 23 23 O 1.42895 * 109.47124 * 65.38429 * 22 21 11 24 24 C 1.42893 * 114.00425 * 180.02562 * 23 22 21 25 25 C 1.47073 * 118.23861 * 308.81318 * 7 6 5 26 26 C 1.46900 * 111.00033 * 170.00015 * 4 3 2 27 27 H 4.40884 * 5.52169 * 180.02562 * 4 1 2 28 28 H 1.09002 * 109.46911 * 251.69275 * 3 2 1 29 29 H 1.08998 * 109.46867 * 11.68906 * 3 2 1 30 30 H 1.08996 * 109.49235 * 292.71238 * 5 4 3 31 31 H 1.09000 * 109.48986 * 52.78835 * 5 4 3 32 32 H 1.09002 * 109.63068 * 294.12196 * 6 5 4 33 33 H 1.08999 * 109.62610 * 173.54190 * 6 5 4 34 34 H 1.09002 * 109.47197 * 215.00340 * 12 11 8 35 35 H 1.09001 * 109.46647 * 334.99880 * 12 11 8 36 36 H 0.97008 * 119.99926 * 180.02562 * 16 15 13 37 37 H 1.09000 * 109.47565 * 215.06856 * 21 11 8 38 38 H 1.09002 * 109.46982 * 335.06115 * 21 11 8 39 39 H 1.08997 * 109.47046 * 185.38503 * 22 21 11 40 40 H 1.09002 * 109.46642 * 305.38790 * 22 21 11 41 41 H 1.08998 * 109.47121 * 300.00141 * 24 23 22 42 42 H 1.09002 * 109.47045 * 59.99707 * 24 23 22 43 43 H 1.08997 * 109.47918 * 179.97438 * 24 23 22 44 44 H 1.09009 * 109.62760 * 291.47886 * 25 7 6 45 45 H 1.09001 * 109.63310 * 170.89656 * 25 7 6 46 46 H 1.09004 * 109.49138 * 307.21089 * 26 4 3 47 47 H 1.08999 * 109.49520 * 67.29569 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1353 0.9220 -1.0342 5 6 2.7789 0.4438 -2.3767 6 6 3.1441 1.5144 -3.4104 7 7 4.5598 1.8715 -3.2329 8 16 5.6044 1.8694 -4.5179 9 8 4.8231 2.1521 -5.6707 10 8 6.7237 2.6525 -4.1264 11 7 6.1581 0.3191 -4.6970 12 6 7.4321 -0.0782 -4.0925 13 6 7.1753 -0.7081 -2.7477 14 1 6.1642 -0.8033 -2.3802 15 6 8.2312 -1.1627 -1.9865 16 7 9.4624 -1.0472 -2.4343 17 14 7.9130 -1.9427 -0.3193 18 1 7.0514 -3.1404 -0.4894 19 1 9.2044 -2.3456 0.2933 20 1 7.2301 -0.9632 0.5634 21 6 5.3740 -0.6553 -5.4598 22 6 5.8790 -0.6984 -6.9034 23 8 7.2165 -1.2008 -6.9254 24 6 7.7858 -1.2814 -8.2335 25 6 5.0232 2.2300 -1.8839 26 6 4.5840 1.1312 -0.9103 27 1 -1.0501 0.0000 0.0003 28 1 3.0092 0.3236 0.9757 29 1 3.0098 -1.0055 -0.2082 30 1 3.3269 -0.4732 -2.5935 31 1 1.7077 0.2467 -2.4201 32 1 2.5222 2.3967 -3.2591 33 1 2.9888 1.1214 -4.4151 34 1 7.9333 -0.7971 -4.7407 35 1 8.0645 0.8007 -3.9672 36 1 10.2052 -1.3674 -1.8989 37 1 5.4808 -1.6415 -5.0079 38 1 4.3238 -0.3635 -5.4508 39 1 5.2360 -1.3510 -7.4940 40 1 5.8616 0.3069 -7.3245 41 1 7.1825 -1.9458 -8.8521 42 1 7.8080 -0.2881 -8.6819 43 1 8.8014 -1.6712 -8.1646 44 1 4.5819 3.1812 -1.5859 45 1 6.1103 2.3102 -1.8794 46 1 4.8220 1.4327 0.1098 47 1 5.1069 0.2048 -1.1476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330033400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:33 Heat of formation + Delta-G solvation = -43.541368 kcal Electronic energy + Delta-G solvation = -30856.614898 eV Core-core repulsion = 26782.802357 eV Total energy + Delta-G solvation = -4073.812540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -38.86582 -37.73061 -36.69320 -35.33740 -35.21033 -35.08354 -32.57975 -32.49222 -30.92603 -29.47749 -27.95261 -26.74294 -25.64894 -24.21103 -23.65862 -22.82168 -21.79763 -20.33737 -18.42207 -18.16089 -17.34744 -17.00867 -16.36015 -16.04089 -15.73081 -15.45049 -15.24573 -15.08563 -14.86946 -14.64951 -14.47885 -14.21621 -14.07934 -13.46669 -13.19871 -12.78272 -12.67954 -12.31947 -12.09834 -12.06836 -11.98803 -11.90307 -11.66214 -11.49843 -11.21740 -11.11416 -11.07017 -11.00453 -10.89916 -10.83829 -10.59570 -10.36978 -10.35725 -10.19439 -10.03115 -9.74024 -9.27751 -8.86990 -8.43343 -8.21160 -7.96087 -6.05759 -4.11259 1.23323 2.66151 2.80848 3.22825 3.28246 3.30871 3.43702 4.02728 4.12817 4.17183 4.36901 4.37650 4.85568 4.90229 5.17790 5.26047 5.27920 5.30972 5.41087 5.44560 5.50121 5.53800 5.57395 5.63845 5.66902 5.69967 5.72693 5.77416 5.79713 5.89583 5.95006 5.99701 6.05831 6.29168 6.34280 6.37872 6.55688 6.87052 7.03939 7.09608 7.51674 7.54814 7.57034 7.57400 7.79169 7.93788 8.23933 8.92362 9.52449 11.02328 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008937 B = 0.005515 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.192412 B = 5076.213071 C = 6679.625368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.158 3.842 4 N -0.533 5.533 5 C 0.040 3.960 6 C 0.134 3.866 7 N -1.007 6.007 8 S 2.781 3.219 9 O -1.001 7.001 10 O -0.973 6.973 11 N -0.984 5.984 12 C 0.247 3.753 13 C -0.535 4.535 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.885 3.115 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.137 3.863 22 C 0.043 3.957 23 O -0.369 6.369 24 C 0.031 3.969 25 C 0.137 3.863 26 C 0.035 3.965 27 H 0.215 0.785 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.033 0.967 42 H 0.035 0.965 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.103 0.897 46 H 0.082 0.918 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.186 0.805 -1.582 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.169 4.169 3 C 0.031 3.969 4 N -0.258 5.258 5 C -0.089 4.089 6 C 0.007 3.993 7 N -0.846 5.846 8 S 2.790 3.210 9 O -0.984 6.984 10 O -0.957 6.957 11 N -0.825 5.825 12 C 0.125 3.875 13 C -0.574 4.574 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.713 3.287 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.010 3.990 22 C -0.036 4.036 23 O -0.287 6.287 24 C -0.066 4.066 25 C 0.011 3.989 26 C -0.094 4.094 27 H 0.232 0.768 28 H 0.116 0.884 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.101 0.899 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.810 1.941 -1.840 13.086 hybrid contribution -0.171 -1.657 0.870 1.879 sum -12.981 0.284 -0.971 13.021 Atomic orbital electron populations 1.24817 0.95795 1.01439 1.00800 1.22932 0.94190 0.99658 1.00116 1.19038 0.84907 0.96004 0.96956 1.61897 1.15032 1.46231 1.02616 1.22502 1.00778 0.96921 0.88698 1.21340 0.81818 0.98028 0.98099 1.58325 1.19587 1.83497 1.23155 1.01947 0.72420 0.73890 0.72703 1.93527 1.72074 1.84688 1.48159 1.93573 1.50697 1.68217 1.83209 1.57718 1.32636 1.27877 1.64296 1.19273 0.78130 0.97510 0.92615 1.21512 0.92961 1.40251 1.02715 0.92283 1.24899 0.95047 0.95903 0.97818 1.69930 0.98374 1.46282 1.37865 0.86781 0.77618 0.79760 0.84513 1.20457 1.21242 1.20060 1.21048 0.92829 0.95727 0.89406 1.23104 0.84148 0.97984 0.98344 1.88096 1.28291 1.85595 1.26737 1.22699 0.98900 0.99626 0.85378 1.21374 1.00669 0.96674 0.80173 1.22638 0.86056 1.00554 1.00103 0.76785 0.88438 0.92190 0.93502 0.90183 0.90941 0.89841 0.92591 0.93598 0.92675 0.89251 0.90838 0.93266 0.93075 0.94808 0.94600 0.89842 0.91422 0.87901 0.89927 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.20 19.25 29.55 0.57 -1.63 16 2 C -0.17 -2.04 12.32 -37.12 -0.46 -2.50 16 3 C 0.16 1.94 5.46 -6.61 -0.04 1.91 16 4 N -0.53 -7.27 4.61 -237.83 -1.10 -8.37 16 5 C 0.04 0.53 5.46 -3.70 -0.02 0.51 16 6 C 0.13 1.84 6.52 -3.60 -0.02 1.82 16 7 N -1.01 -16.77 3.39 -113.23 -0.38 -17.15 16 8 S 2.78 55.12 6.03 -107.50 -0.65 54.47 16 9 O -1.00 -20.02 16.13 -57.17 -0.92 -20.94 16 10 O -0.97 -22.63 15.23 -57.17 -0.87 -23.50 16 11 N -0.98 -19.97 2.81 -115.66 -0.33 -20.29 16 12 C 0.25 6.07 5.26 -5.19 -0.03 6.04 16 13 C -0.53 -13.48 9.38 -34.44 -0.32 -13.80 16 14 H 0.06 1.41 5.97 -52.49 -0.31 1.09 16 15 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 17 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 C 0.14 2.33 5.78 -4.04 -0.02 2.30 16 22 C 0.04 0.70 6.28 37.16 0.23 0.93 16 23 O -0.37 -6.76 9.03 -35.23 -0.32 -7.08 16 24 C 0.03 0.43 11.01 101.05 1.11 1.55 16 25 C 0.14 2.21 6.56 -3.60 -0.02 2.18 16 26 C 0.03 0.53 5.62 -3.70 -0.02 0.51 16 27 H 0.22 1.46 7.80 -54.08 -0.42 1.04 16 28 H 0.10 1.08 7.97 -51.93 -0.41 0.67 16 29 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.95 7.07 -51.93 -0.37 0.58 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.07 6.79 -51.93 -0.35 0.72 16 34 H 0.06 1.49 6.60 -51.93 -0.34 1.15 16 35 H 0.05 1.27 6.88 -51.93 -0.36 0.91 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 38 H 0.07 1.03 7.19 -51.93 -0.37 0.66 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.85 8.00 -51.93 -0.42 0.44 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 45 H 0.10 1.87 7.08 -51.93 -0.37 1.50 16 46 H 0.08 1.11 7.99 -51.93 -0.41 0.70 16 47 H 0.07 1.16 6.30 -51.93 -0.33 0.84 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -32.20 392.92 -9.47 -41.67 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -7.40 Total: 3.13 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 0.86 Total: 1.47 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -1.07 Total: -70.20 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -2.11 Total: -51.52 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 55.12 SS G_CDS: -0.65 Total: 54.47 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.20 -9.47 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330033400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.873 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds