Wall clock time and date at job start Tue Mar 31 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08988 * 109.47099 * 2 1 4 4 C 1.50700 * 109.46730 * 239.99761 * 2 1 3 5 5 H 1.08003 * 120.00021 * 239.99559 * 4 2 1 6 6 C 1.37875 * 120.00154 * 60.01151 * 4 2 1 7 7 N 1.31519 * 119.99768 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00155 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47146 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47682 * 119.99478 * 8 6 4 11 11 H 1.48510 * 109.46902 * 239.99615 * 8 6 4 12 12 N 1.46499 * 109.46571 * 119.99965 * 2 1 3 13 13 C 1.34769 * 120.00219 * 274.99612 * 12 2 1 14 14 O 1.21284 * 120.00013 * 355.00951 * 13 12 2 15 15 C 1.50703 * 120.00114 * 175.00431 * 13 12 2 16 16 N 1.46895 * 109.46897 * 40.40179 * 15 13 12 17 17 C 1.46908 * 111.00070 * 58.30237 * 16 15 13 18 18 C 1.46900 * 111.00154 * 182.25193 * 16 15 13 19 19 C 1.52998 * 109.47024 * 160.40223 * 15 13 12 20 20 C 1.53001 * 109.47545 * 59.99828 * 19 15 13 21 21 C 1.53002 * 109.46601 * 60.00158 * 20 19 15 22 22 C 1.50699 * 109.46899 * 180.02562 * 21 20 19 23 23 C 1.38237 * 120.00128 * 59.72728 * 22 21 20 24 24 C 1.38236 * 119.99558 * 179.76530 * 23 22 21 25 25 C 1.38230 * 120.00378 * 0.50771 * 24 23 22 26 26 C 1.38237 * 119.99933 * 359.74338 * 25 24 23 27 27 C 1.38235 * 119.99958 * 0.02562 * 26 25 24 28 28 C 1.53008 * 109.47079 * 300.00013 * 21 20 19 29 29 C 1.52994 * 109.47233 * 280.40241 * 15 13 12 30 30 H 1.08994 * 109.47332 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47224 * 300.00228 * 1 2 3 32 32 H 1.09003 * 109.47106 * 59.99877 * 1 2 3 33 33 H 0.97005 * 119.99451 * 180.02562 * 7 6 4 34 34 H 0.97006 * 119.99718 * 94.99919 * 12 2 1 35 35 H 1.08999 * 109.46907 * 182.72093 * 17 16 15 36 36 H 1.08993 * 109.47177 * 62.71676 * 17 16 15 37 37 H 1.08999 * 109.46545 * 302.71507 * 17 16 15 38 38 H 1.09002 * 109.46916 * 300.00250 * 18 16 15 39 39 H 1.09005 * 109.47124 * 59.99736 * 18 16 15 40 40 H 1.08999 * 109.47905 * 180.02562 * 18 16 15 41 41 H 1.09001 * 109.47042 * 180.02562 * 19 15 13 42 42 H 1.09005 * 109.47497 * 300.00110 * 19 15 13 43 43 H 1.08997 * 109.46930 * 300.00366 * 20 19 15 44 44 H 1.08998 * 109.47285 * 179.97438 * 20 19 15 45 45 H 1.08995 * 109.47407 * 59.99665 * 21 20 19 46 46 H 1.07994 * 119.99828 * 359.97438 * 23 22 21 47 47 H 1.08006 * 119.99511 * 180.22634 * 24 23 22 48 48 H 1.08004 * 120.00183 * 179.72720 * 25 24 23 49 49 H 1.08002 * 119.99938 * 179.97438 * 26 25 24 50 50 H 1.08002 * 120.00150 * 179.97438 * 27 26 25 51 51 H 1.09001 * 109.47136 * 299.99931 * 28 21 20 52 52 H 1.09004 * 109.46838 * 180.02562 * 28 21 20 53 53 H 1.08998 * 109.47235 * 59.99793 * 29 15 13 54 54 H 1.08997 * 109.47122 * 180.02562 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8298 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1482 -2.2859 -3.6037 10 1 1.1678 -1.5866 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.9458 1.1772 2.3911 15 6 2.5408 -0.7521 3.6132 16 7 3.5772 -1.7437 3.2963 17 6 4.7550 -1.1013 2.6977 18 6 3.9486 -2.5166 4.4891 19 6 3.0855 0.2457 4.6371 20 6 2.0061 1.2786 4.9671 21 6 0.7817 0.5686 5.5483 22 6 -0.2818 1.5858 5.8727 23 6 -0.7986 2.3884 4.8728 24 6 -1.7776 3.3181 5.1697 25 6 -2.2323 3.4525 6.4681 26 6 -1.7118 2.6535 7.4689 27 6 -0.7362 1.7205 7.1713 28 6 0.2369 -0.4292 4.5242 29 6 1.3164 -1.4620 4.1942 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.7085 1.1610 -3.4845 34 1 2.2489 -1.6319 1.1526 35 1 5.4868 -1.8630 2.4287 36 1 5.1966 -0.4107 3.4159 37 1 4.4552 -0.5538 1.8041 38 1 4.3326 -1.8418 5.2542 39 1 3.0712 -3.0381 4.8718 40 1 4.7177 -3.2430 4.2266 41 1 3.3708 -0.2851 5.5454 42 1 3.9579 0.7515 4.2232 43 1 1.7212 1.8092 4.0586 44 1 2.3940 1.9891 5.6969 45 1 1.0665 0.0378 6.4566 46 1 -0.4399 2.2867 3.8593 47 1 -2.1840 3.9426 4.3878 48 1 -2.9941 4.1820 6.7008 49 1 -2.0667 2.7588 8.4835 50 1 -0.3292 1.0965 7.9532 51 1 -0.0480 0.1015 3.6158 52 1 -0.6357 -0.9347 4.9381 53 1 0.9283 -2.1728 3.4647 54 1 1.6012 -1.9923 5.1029 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408517954.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:07 Heat of formation + Delta-G solvation = -27.368265 kcal Electronic energy + Delta-G solvation = -32393.442713 eV Core-core repulsion = 28521.979640 eV Total energy + Delta-G solvation = -3871.463073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.221 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.14417 -40.19346 -38.71516 -37.06865 -36.42639 -34.24016 -32.78534 -31.80570 -31.73814 -30.93052 -29.24661 -28.46960 -27.33315 -25.67319 -23.80765 -23.77580 -23.58382 -22.90444 -21.77742 -20.91030 -20.37480 -18.42454 -17.86060 -17.55978 -17.18678 -16.84448 -16.20953 -16.11873 -15.86161 -15.55785 -15.45029 -15.18747 -15.15741 -14.68494 -14.48832 -14.32870 -14.11433 -14.05143 -13.88826 -13.67969 -13.41721 -13.22442 -12.99137 -12.97667 -12.87705 -12.80418 -12.72445 -12.67341 -12.46823 -12.33515 -12.26201 -12.14312 -12.03319 -11.72966 -11.52820 -11.28151 -11.16689 -11.07285 -10.62283 -10.05480 -9.78692 -9.60608 -9.53474 -9.23919 -8.16784 -6.33387 0.49379 0.52994 1.42749 1.43774 1.56105 1.87288 2.36614 2.68591 2.89639 2.91553 3.13478 3.64327 3.71734 3.82248 3.91030 4.15536 4.16768 4.21516 4.26590 4.29020 4.32919 4.43610 4.45779 4.52674 4.56527 4.65000 4.66077 4.71382 4.74040 4.74944 4.78189 4.90423 4.92235 4.94235 5.04316 5.07058 5.10845 5.13895 5.16769 5.22491 5.27467 5.31183 5.34280 5.43528 5.54720 5.61975 5.66268 5.67982 5.78232 5.85099 5.94022 6.01885 6.09612 6.15480 6.17467 6.75787 7.09820 7.34893 7.68771 8.89429 Molecular weight = 344.22amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.003605 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.770429 B = 7765.465462 C = 9639.784610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.273 3.727 3 H -0.005 1.005 4 C -0.541 4.541 5 H 0.069 0.931 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.970 3.030 9 H -0.261 1.261 10 H -0.278 1.278 11 H -0.284 1.284 12 N -0.695 5.695 13 C 0.517 3.483 14 O -0.585 6.585 15 C 0.105 3.895 16 N -0.539 5.539 17 C 0.018 3.982 18 C 0.017 3.983 19 C -0.119 4.119 20 C -0.131 4.131 21 C -0.033 4.033 22 C -0.081 4.081 23 C -0.132 4.132 24 C -0.136 4.136 25 C -0.131 4.131 26 C -0.122 4.122 27 C -0.122 4.122 28 C -0.110 4.110 29 C -0.096 4.096 30 H 0.036 0.964 31 H 0.009 0.991 32 H 0.064 0.936 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.048 0.952 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.121 0.879 48 H 0.142 0.858 49 H 0.150 0.850 50 H 0.146 0.854 51 H 0.031 0.969 52 H 0.079 0.921 53 H 0.070 0.930 54 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -5.058 22.399 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.170 3.830 3 H 0.013 0.987 4 C -0.580 4.580 5 H 0.087 0.913 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.794 3.206 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.210 1.210 12 N -0.343 5.343 13 C 0.303 3.697 14 O -0.467 6.467 15 C 0.012 3.988 16 N -0.263 5.263 17 C -0.130 4.130 18 C -0.130 4.130 19 C -0.159 4.159 20 C -0.169 4.169 21 C -0.052 4.052 22 C -0.081 4.081 23 C -0.150 4.150 24 C -0.154 4.154 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.148 4.148 29 C -0.134 4.134 30 H 0.055 0.945 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.109 0.891 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.117 0.883 46 H 0.110 0.890 47 H 0.139 0.861 48 H 0.159 0.841 49 H 0.167 0.833 50 H 0.163 0.837 51 H 0.050 0.950 52 H 0.097 0.903 53 H 0.088 0.912 54 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.160 -4.462 21.893 22.344 hybrid contribution 0.584 0.535 -1.213 1.448 sum 0.743 -3.927 20.680 21.063 Atomic orbital electron populations 1.21855 0.98491 0.99113 0.99251 1.18258 0.90788 0.91743 0.82231 0.98661 1.21553 1.32220 1.13267 0.90928 0.91330 1.25775 0.94943 0.95588 1.02226 1.70067 1.37164 1.24001 1.24380 0.85333 0.78128 0.78557 0.78543 1.18442 1.20385 1.20982 1.46282 1.64279 1.14324 1.09398 1.20857 0.76347 0.86978 0.85475 1.90488 1.54087 1.16607 1.85494 1.21250 0.94499 0.91760 0.91299 1.62215 1.09961 1.24004 1.30115 1.22467 0.92802 0.99252 0.98527 1.22609 1.02544 0.97563 0.90260 1.21881 0.98224 0.96952 0.98802 1.21978 0.94662 0.98039 1.02199 1.20110 0.92477 0.93717 0.98863 1.20024 0.97361 0.96941 0.93768 1.21105 0.97835 0.97155 0.98948 1.21345 0.97457 0.98647 0.97945 1.21415 1.00720 1.00332 0.92463 1.21488 0.96686 0.95526 1.00266 1.21358 0.97716 0.99355 0.95518 1.21574 0.98397 0.96553 0.98261 1.21587 0.92400 0.97230 1.02146 0.94450 0.97197 0.91694 0.92675 0.76084 0.89143 0.94648 0.94188 0.94190 0.89505 0.89953 0.88697 0.93322 0.90119 0.92574 0.88273 0.88958 0.86109 0.84059 0.83269 0.83661 0.95011 0.90259 0.91163 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.69 9.26 71.98 0.67 -6.02 16 2 C 0.27 14.55 2.60 44.25 0.12 14.67 16 3 H 0.00 -0.28 7.51 -2.39 -0.02 -0.30 16 4 C -0.54 -29.48 8.73 25.60 0.22 -29.26 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 8 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 9 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 N -0.70 -30.12 4.48 -446.11 -2.00 -32.12 16 13 C 0.52 20.73 4.03 87.66 0.35 21.08 16 14 O -0.59 -27.99 12.55 -3.04 -0.04 -28.03 16 15 C 0.10 2.97 0.37 2.78 0.00 2.97 16 16 N -0.54 -13.30 4.21 -902.97 -3.80 -17.10 16 17 C 0.02 0.47 8.87 127.69 1.13 1.61 16 18 C 0.02 0.28 8.81 127.69 1.13 1.41 16 19 C -0.12 -3.14 3.86 30.59 0.12 -3.02 16 20 C -0.13 -3.82 4.72 30.60 0.14 -3.67 16 21 C -0.03 -0.82 2.36 -11.54 -0.03 -0.84 16 22 C -0.08 -2.11 4.78 -19.87 -0.09 -2.20 16 23 C -0.13 -4.10 8.71 22.27 0.19 -3.90 16 24 C -0.14 -3.65 10.05 22.27 0.22 -3.42 16 25 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 26 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 27 C -0.12 -2.48 9.67 22.27 0.22 -2.27 16 28 C -0.11 -2.95 4.79 30.60 0.15 -2.80 16 29 C -0.10 -2.30 4.42 30.59 0.14 -2.17 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 33 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 34 H 0.40 16.04 8.00 -92.70 -0.74 15.30 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 0.88 6.49 -2.39 -0.02 0.86 16 37 H 0.04 1.38 6.58 -2.39 -0.02 1.36 16 38 H 0.04 0.59 6.36 -2.39 -0.02 0.58 16 39 H 0.09 1.19 6.26 -2.38 -0.01 1.18 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.87 6.45 -2.39 -0.02 1.86 16 42 H 0.05 1.44 6.50 -2.38 -0.02 1.43 16 43 H 0.08 3.12 4.17 -3.20 -0.01 3.10 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.10 1.82 7.88 -2.39 -0.02 1.80 16 46 H 0.09 3.48 7.10 -2.91 -0.02 3.46 16 47 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 48 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 49 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 50 H 0.15 2.11 7.95 -2.91 -0.02 2.08 16 51 H 0.03 1.13 6.28 -2.39 -0.01 1.11 16 52 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 53 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 54 H 0.11 1.82 6.37 -2.39 -0.02 1.81 16 Total: -1.00 -68.25 402.00 2.15 -66.10 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: 0.15 Total: 40.74 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 5.57 Total: -21.23 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -5.55 Total: -102.59 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.04 Total: -28.03 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -68.25 2.15 -66.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408517954.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.732 kcal (2) G-P(sol) polarization free energy of solvation -68.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds