Wall clock time and date at job start Tue Mar 31 2020 06:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.35028 * 119.99832 * 254.75017 * 3 2 1 5 5 C 1.46938 * 119.99806 * 187.00635 * 4 3 2 6 6 C 1.39887 * 120.22181 * 313.13413 * 5 4 3 7 7 C 1.37780 * 119.89451 * 180.02562 * 6 5 4 8 8 C 1.38603 * 120.34893 * 359.97438 * 7 6 5 9 9 C 1.38077 * 120.44327 * 0.02562 * 8 7 6 10 10 C 1.38759 * 120.09893 * 359.71470 * 9 8 7 11 11 O 1.35545 * 120.17266 * 180.30020 * 10 9 8 12 12 C 1.34780 * 117.00195 * 5.88585 * 11 10 9 13 13 H 1.08004 * 119.99827 * 4.32233 * 12 11 10 14 14 C 1.38695 * 120.00118 * 184.32824 * 12 11 10 15 15 N 1.31523 * 120.00194 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99792 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47081 * 90.00060 * 16 14 12 18 18 H 1.48501 * 109.47340 * 210.00276 * 16 14 12 19 19 H 1.48503 * 109.47534 * 330.00199 * 16 14 12 20 20 C 1.50697 * 119.99599 * 75.02525 * 3 2 1 21 21 N 1.46500 * 109.47546 * 292.76906 * 20 3 2 22 22 C 1.36036 * 126.34907 * 255.14673 * 21 20 3 23 23 N 1.30114 * 110.09827 * 179.86911 * 22 21 20 24 24 C 1.35781 * 109.64190 * 0.40132 * 23 22 21 25 25 C 1.39742 * 133.60296 * 179.75966 * 24 23 22 26 26 C 1.36599 * 119.88704 * 179.97438 * 25 24 23 27 27 C 1.38777 * 120.67429 * 359.97438 * 26 25 24 28 28 C 1.37858 * 120.44485 * 0.03954 * 27 26 25 29 29 C 1.38052 * 126.34599 * 75.45532 * 21 20 3 30 30 H 1.08001 * 120.00158 * 7.00849 * 4 3 2 31 31 H 1.08004 * 120.04922 * 0.02562 * 6 5 4 32 32 H 1.07999 * 119.82487 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.77979 * 179.97438 * 8 7 6 34 34 H 1.08005 * 119.95378 * 180.02562 * 9 8 7 35 35 H 0.96996 * 119.99834 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47566 * 52.77500 * 20 3 2 37 37 H 1.09004 * 109.46826 * 172.77174 * 20 3 2 38 38 H 1.07995 * 124.95184 * 0.02562 * 22 21 20 39 39 H 1.08005 * 120.05529 * 359.97318 * 25 24 23 40 40 H 1.08006 * 119.66529 * 179.97438 * 26 25 24 41 41 H 1.07995 * 119.77695 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.15027 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2430 0.3085 1.1282 5 6 4.7041 0.4602 1.0920 6 6 5.4952 -0.4943 0.4439 7 6 6.8646 -0.3456 0.4145 8 6 7.4639 0.7457 1.0235 9 6 6.6966 1.6963 1.6672 10 6 5.3155 1.5678 1.7035 11 8 4.5605 2.5032 2.3296 12 6 5.1994 3.5962 2.7919 13 1 6.2529 3.7295 2.5948 14 6 4.5041 4.5496 3.5206 15 7 5.1275 5.6165 3.9713 16 14 2.6819 4.3192 3.8609 17 1 2.5063 3.5772 5.1352 18 1 2.0263 5.6475 3.9672 19 1 2.0644 3.5499 2.7510 20 6 3.3216 -0.3363 -1.2608 21 7 3.1035 -1.7450 -1.5985 22 6 3.9930 -2.7609 -1.4332 23 7 3.4705 -3.8826 -1.8354 24 6 2.2121 -3.6611 -2.2947 25 6 1.2237 -4.4885 -2.8345 26 6 0.0241 -3.9570 -3.2146 27 6 -0.2266 -2.5998 -3.0701 28 6 0.7338 -1.7646 -2.5403 29 6 1.9592 -2.2867 -2.1491 30 1 2.7090 0.4433 2.0572 31 1 5.0332 -1.3463 -0.0326 32 1 7.4744 -1.0834 -0.0859 33 1 8.5382 0.8529 0.9952 34 1 7.1718 2.5438 2.1388 35 1 4.6413 6.2831 4.4813 36 1 2.9646 0.2924 -2.0765 37 1 4.3861 -0.1605 -1.1058 38 1 4.9870 -2.6525 -1.0252 39 1 1.4080 -5.5463 -2.9511 40 1 -0.7371 -4.5997 -3.6318 41 1 -1.1803 -2.1951 -3.3750 42 1 0.5335 -0.7091 -2.4297 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408691513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:54 Heat of formation + Delta-G solvation = 138.863934 kcal Electronic energy + Delta-G solvation = -28557.044277 eV Core-core repulsion = 24663.006393 eV Total energy + Delta-G solvation = -3894.037884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.122 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.27031 -39.81057 -37.90106 -37.22317 -36.73448 -35.08687 -33.32693 -32.69869 -30.57900 -30.09327 -29.44019 -29.31195 -26.67517 -25.62867 -23.62172 -23.45552 -22.22239 -21.83255 -20.67932 -20.59750 -18.27187 -17.78672 -17.47306 -17.28681 -16.72376 -16.00906 -15.79383 -15.23013 -14.99220 -14.63333 -14.34802 -14.29936 -14.18200 -14.07139 -13.74129 -13.60839 -13.47043 -13.31797 -12.73167 -12.59254 -12.45466 -12.41221 -12.25516 -12.06328 -11.70611 -11.61259 -11.53110 -11.21009 -11.04600 -10.94457 -10.48273 -10.42685 -10.03344 -9.77579 -9.61898 -9.15485 -8.45376 -8.35312 -8.17054 -7.67348 -6.71683 -4.38079 0.77408 0.89819 1.44778 1.82800 1.94325 2.56635 2.67738 2.81865 3.03974 3.08937 3.20284 3.47615 3.81789 3.91027 3.98564 4.11669 4.13749 4.38086 4.45274 4.53491 4.78859 4.81634 4.91560 4.93509 5.07624 5.18244 5.28573 5.35318 5.35904 5.41748 5.49323 5.62689 5.65454 5.74964 6.00225 6.06189 6.11479 6.17065 6.31156 6.36508 6.43281 6.45366 6.67040 6.77953 6.78656 6.92423 7.02761 7.21042 7.44364 7.60257 7.69819 7.78764 8.61097 9.17136 10.34371 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003278 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.405259 B = 8540.839354 C =10260.676324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.257 3.743 3 C -0.143 4.143 4 C 0.062 3.938 5 C -0.177 4.177 6 C -0.071 4.071 7 C -0.205 4.205 8 C -0.056 4.056 9 C -0.214 4.214 10 C 0.184 3.816 11 O -0.198 6.198 12 C -0.394 4.394 13 H 0.112 0.888 14 C 0.071 3.929 15 N -0.863 5.863 16 Si 0.900 3.100 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.257 1.257 20 C 0.147 3.853 21 N -0.484 5.484 22 C 0.258 3.742 23 N -0.497 5.497 24 C 0.044 3.956 25 C -0.067 4.067 26 C -0.130 4.130 27 C -0.104 4.104 28 C -0.103 4.103 29 C 0.051 3.949 30 H 0.132 0.868 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.140 0.860 35 H 0.284 0.716 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.216 0.784 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 -12.979 -10.961 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.057 4.057 3 C -0.148 4.148 4 C 0.038 3.962 5 C -0.179 4.179 6 C -0.088 4.088 7 C -0.224 4.224 8 C -0.075 4.075 9 C -0.233 4.233 10 C 0.128 3.872 11 O -0.100 6.100 12 C -0.469 4.469 13 H 0.129 0.871 14 C -0.135 4.135 15 N -0.498 5.498 16 Si 0.724 3.276 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.181 1.181 20 C 0.026 3.974 21 N -0.173 5.173 22 C -0.027 4.027 23 N -0.215 5.215 24 C -0.074 4.074 25 C -0.087 4.087 26 C -0.150 4.150 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.058 4.058 30 H 0.150 0.850 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.157 0.843 38 H 0.232 0.768 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.786 -13.363 -10.749 17.375 hybrid contribution -0.484 1.129 0.528 1.337 sum -3.270 -12.234 -10.222 16.274 Atomic orbital electron populations 1.81189 1.11972 1.10092 1.07097 1.25709 0.92743 0.93253 0.93993 1.18038 0.84662 1.15022 0.97043 1.22138 0.93261 0.84848 0.95937 1.17810 0.91231 0.98673 1.10174 1.21048 0.93790 0.97079 0.96922 1.20628 0.94085 1.00552 1.07173 1.21012 0.99211 0.92934 0.94309 1.21310 0.93056 1.02688 1.06225 1.19047 0.89786 0.87890 0.90432 1.83496 1.36504 1.27310 1.62730 1.20815 0.97041 0.94712 1.34290 0.87102 1.24487 1.00265 0.94128 0.94650 1.69605 1.37618 1.09253 1.33371 0.86264 0.82900 0.78367 0.80030 1.19507 1.20330 1.18120 1.20983 1.03595 0.78246 0.94590 1.45605 1.12188 1.08944 1.50541 1.25423 0.96894 0.81658 0.98709 1.70471 1.07765 1.25102 1.18192 1.19064 0.93221 0.91200 1.03939 1.19983 0.91475 0.99088 0.98122 1.20612 0.96961 0.95251 1.02215 1.20855 0.98552 0.93458 0.99536 1.20021 0.90836 0.99954 1.01593 1.18898 0.89952 0.94444 1.02549 0.85024 0.86368 0.86527 0.86586 0.84281 0.90510 0.88676 0.84342 0.76785 0.85544 0.85568 0.85590 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.28 18.05 41.84 0.76 -6.52 16 2 C 0.26 3.99 13.06 -22.47 -0.29 3.70 16 3 C -0.14 -1.94 5.51 -103.84 -0.57 -2.51 16 4 C 0.06 0.91 8.97 -37.20 -0.33 0.57 16 5 C -0.18 -2.68 5.28 -104.90 -0.55 -3.24 16 6 C -0.07 -0.85 7.26 -39.13 -0.28 -1.14 16 7 C -0.21 -2.43 10.02 -39.61 -0.40 -2.83 16 8 C -0.06 -0.77 10.03 -39.51 -0.40 -1.16 16 9 C -0.21 -3.67 9.13 -39.45 -0.36 -4.03 16 10 C 0.18 3.41 6.66 -38.53 -0.26 3.15 16 11 O -0.20 -4.39 8.04 0.82 0.01 -4.39 16 12 C -0.39 -9.68 9.91 30.90 0.31 -9.37 16 13 H 0.11 2.76 5.51 -52.48 -0.29 2.48 16 14 C 0.07 1.79 5.49 -17.51 -0.10 1.69 16 15 N -0.86 -22.73 13.96 55.48 0.77 -21.96 16 16 Si 0.90 19.80 28.62 -169.99 -4.86 14.93 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 20 C 0.15 1.66 5.60 -5.19 -0.03 1.63 16 21 N -0.48 -5.88 2.81 -117.08 -0.33 -6.21 16 22 C 0.26 2.98 11.45 -89.78 -1.03 1.95 16 23 N -0.50 -6.96 11.27 -12.05 -0.14 -7.10 16 24 C 0.04 0.62 7.23 -84.70 -0.61 0.01 16 25 C -0.07 -0.81 10.05 -39.61 -0.40 -1.21 16 26 C -0.13 -1.38 9.96 -39.97 -0.40 -1.78 16 27 C -0.10 -1.19 10.03 -39.52 -0.40 -1.59 16 28 C -0.10 -1.35 8.98 -39.50 -0.35 -1.71 16 29 C 0.05 0.70 6.41 -83.99 -0.54 0.16 16 30 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.12 1.16 3.09 -52.48 -0.16 0.99 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.14 2.56 5.70 -52.48 -0.30 2.26 16 35 H 0.28 6.94 8.31 -40.82 -0.34 6.61 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.14 1.40 4.08 -51.93 -0.21 1.19 16 38 H 0.22 1.69 6.17 -52.49 -0.32 1.36 16 39 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.12 1.54 6.82 -52.49 -0.36 1.18 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -28.87 361.29 -9.08 -37.95 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -3.74 Total: 5.55 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -6.99 Total: -17.71 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 1.06 Total: -41.79 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: 0.01 Total: -4.39 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.86 Total: 14.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.87 -9.08 -37.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408691513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.812 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds