Wall clock time and date at job start Tue Mar 31 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99745 * 2 1 4 4 H 1.09002 * 109.46880 * 29.99994 * 3 2 1 5 5 C 1.50694 * 109.46972 * 269.99900 * 3 2 1 6 6 O 1.21301 * 120.00236 * 355.00466 * 5 3 2 7 7 N 1.34782 * 119.99812 * 174.99873 * 5 3 2 8 8 N 1.40099 * 119.99891 * 180.02562 * 7 5 3 9 9 C 1.28013 * 120.00155 * 174.71311 * 8 7 5 10 10 C 1.51269 * 120.84580 * 4.55244 * 9 8 7 11 11 C 1.52799 * 108.76738 * 231.31515 * 10 9 8 12 12 C 1.52955 * 109.48353 * 305.61277 * 11 10 9 13 13 C 1.52968 * 109.81745 * 63.46325 * 12 11 10 14 14 C 1.51263 * 120.85351 * 184.84286 * 9 8 7 15 15 H 1.09000 * 109.62546 * 248.34320 * 14 9 8 16 16 C 1.53005 * 109.62732 * 8.91005 * 14 9 8 17 17 C 1.50708 * 109.46801 * 295.00410 * 16 14 9 18 18 H 1.08003 * 119.99991 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99553 * 179.97438 * 17 16 14 20 20 N 1.31510 * 120.00602 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99565 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47100 * 59.99919 * 21 19 17 23 23 H 1.48498 * 109.46732 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47047 * 299.99571 * 21 19 17 25 25 C 1.50697 * 109.46841 * 149.99729 * 3 2 1 26 26 C 1.38231 * 120.00165 * 219.99938 * 25 3 2 27 27 C 1.38238 * 120.00410 * 179.97438 * 26 25 3 28 28 C 1.38236 * 119.99647 * 359.97127 * 27 26 25 29 29 C 1.38230 * 119.99962 * 0.02562 * 28 27 26 30 30 C 1.38235 * 119.99858 * 39.98226 * 25 3 2 31 31 H 1.09000 * 109.47068 * 59.99888 * 1 2 3 32 32 H 1.09002 * 109.46834 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46999 * 299.99695 * 1 2 3 34 34 H 0.96995 * 119.99854 * 359.97438 * 7 5 3 35 35 H 1.09002 * 109.63063 * 351.09176 * 10 9 8 36 36 H 1.09005 * 109.62400 * 111.66408 * 10 9 8 37 37 H 1.08995 * 109.55341 * 185.53942 * 11 10 9 38 38 H 1.08998 * 109.34220 * 65.55139 * 11 10 9 39 39 H 1.09004 * 109.41733 * 303.35910 * 12 11 10 40 40 H 1.08994 * 109.35845 * 183.53133 * 12 11 10 41 41 H 1.09006 * 109.48250 * 176.42370 * 13 12 11 42 42 H 1.08996 * 109.48168 * 56.38393 * 13 12 11 43 43 H 1.08993 * 109.46945 * 54.99687 * 16 14 9 44 44 H 1.09000 * 109.47556 * 175.00474 * 16 14 9 45 45 H 0.96998 * 120.00232 * 180.02562 * 20 19 17 46 46 H 1.08004 * 120.00093 * 359.97438 * 26 25 3 47 47 H 1.07999 * 120.00025 * 180.02562 * 27 26 25 48 48 H 1.07999 * 119.99831 * 179.72279 * 28 27 26 49 49 H 1.08004 * 120.00095 * 179.97438 * 29 28 27 50 50 H 1.07999 * 120.00379 * 359.97438 * 30 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0105 -2.3414 7 7 2.6588 3.0125 -1.6685 8 7 2.8482 3.4393 -2.9894 9 6 3.1724 4.6543 -3.2293 10 6 3.4556 5.6190 -2.0991 11 6 2.6233 6.8828 -2.3113 12 6 2.8987 7.4467 -3.7062 13 6 2.4443 6.4452 -4.7695 14 6 3.2756 5.1636 -4.6498 15 1 4.3174 5.3795 -4.8866 16 6 2.7334 4.1076 -5.6152 17 6 3.6127 2.8845 -5.5671 18 1 4.4724 2.8628 -4.9137 19 6 3.3195 1.7933 -6.3572 20 7 2.2724 1.8195 -7.1524 21 14 4.4098 0.2776 -6.2982 22 1 4.4204 -0.2711 -4.9183 23 1 3.8835 -0.7474 -7.2350 24 1 5.7924 0.6466 -6.6949 25 6 3.3386 1.2640 0.7105 26 6 3.7061 2.2989 1.5499 27 6 4.9244 2.2606 2.2020 28 6 5.7749 1.1869 2.0152 29 6 5.4073 0.1519 1.1758 30 6 4.1893 0.1907 0.5230 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.8466 3.6155 -0.9324 35 1 3.1850 5.1592 -1.1486 36 1 4.5145 5.8779 -2.0955 37 1 2.8900 7.6257 -1.5597 38 1 1.5651 6.6376 -2.2208 39 1 3.9669 7.6333 -3.8173 40 1 2.3526 8.3815 -3.8322 41 1 2.5843 6.8781 -5.7600 42 1 1.3905 6.2102 -4.6208 43 1 1.7184 3.8369 -5.3247 44 1 2.7264 4.5104 -6.6280 45 1 2.0659 1.0517 -7.7080 46 1 3.0415 3.1375 1.6962 47 1 5.2114 3.0690 2.8581 48 1 6.7286 1.1590 2.5212 49 1 6.0719 -0.6868 1.0295 50 1 3.9019 -0.6183 -0.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408720127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:05 Heat of formation + Delta-G solvation = -18.606051 kcal Electronic energy + Delta-G solvation = -31144.076063 eV Core-core repulsion = 27137.159853 eV Total energy + Delta-G solvation = -4006.916209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.27073 -38.99156 -38.38218 -37.11132 -35.09739 -33.41295 -32.62022 -31.39100 -31.05875 -30.89969 -28.18848 -27.43914 -26.21636 -25.61128 -23.00438 -22.71278 -22.32903 -21.37040 -20.53058 -19.92491 -18.88562 -17.49147 -17.11940 -16.69826 -16.09416 -15.91035 -15.79826 -14.91457 -14.67347 -14.57421 -14.31672 -14.28219 -14.20898 -13.82471 -13.64382 -13.53949 -13.33078 -12.98310 -12.74499 -12.60513 -12.46083 -11.90805 -11.68765 -11.59380 -11.33072 -11.20369 -11.06584 -11.01683 -10.85020 -10.71532 -10.51045 -10.40215 -10.29261 -10.25387 -9.88619 -9.56479 -9.39306 -9.05944 -8.86937 -8.77609 -8.65961 -8.08074 -8.03035 -5.69784 -3.64827 1.09123 1.26818 2.44851 2.87627 3.28696 3.48818 3.54523 3.58826 3.68427 3.86603 4.48435 4.67510 4.71001 4.76046 4.84546 4.87608 4.89212 4.94172 5.00135 5.09914 5.22967 5.25145 5.31816 5.43385 5.46414 5.51370 5.61095 5.66839 5.68501 5.70890 5.74337 5.84762 5.90135 5.93510 6.07604 6.10954 6.25212 6.26927 6.36365 6.37439 6.38128 6.54821 6.70358 6.80986 6.85262 6.92566 7.03990 7.57950 7.83185 7.99270 8.19669 8.26421 8.67967 9.05021 9.33117 9.95640 11.42881 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007991 B = 0.004506 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3503.140610 B = 6213.127927 C = 7817.807095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.122 3.878 4 H 0.092 0.908 5 C 0.502 3.498 6 O -0.468 6.468 7 N -0.596 5.596 8 N -0.169 5.169 9 C 0.098 3.902 10 C -0.120 4.120 11 C -0.108 4.108 12 C -0.120 4.120 13 C -0.111 4.111 14 C -0.025 4.025 15 H 0.079 0.921 16 C 0.034 3.966 17 C -0.479 4.479 18 H 0.047 0.953 19 C 0.063 3.937 20 N -0.902 5.902 21 Si 0.882 3.118 22 H -0.276 1.276 23 H -0.291 1.291 24 H -0.283 1.283 25 C -0.088 4.088 26 C -0.111 4.111 27 C -0.121 4.121 28 C -0.114 4.114 29 C -0.120 4.120 30 C -0.080 4.080 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.042 0.958 34 H 0.367 0.633 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.021 0.979 44 H 0.018 0.982 45 H 0.256 0.744 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.125 0.875 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 7.324 21.258 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.267 6.267 3 C 0.059 3.941 4 H 0.110 0.890 5 C 0.286 3.714 6 O -0.336 6.336 7 N -0.341 5.341 8 N 0.029 4.971 9 C -0.098 4.098 10 C -0.161 4.161 11 C -0.146 4.146 12 C -0.158 4.158 13 C -0.150 4.150 14 C -0.046 4.046 15 H 0.097 0.903 16 C -0.003 4.003 17 C -0.518 4.518 18 H 0.066 0.934 19 C -0.137 4.137 20 N -0.543 5.543 21 Si 0.711 3.289 22 H -0.201 1.201 23 H -0.217 1.217 24 H -0.209 1.209 25 C -0.089 4.089 26 C -0.129 4.129 27 C -0.139 4.139 28 C -0.132 4.132 29 C -0.138 4.138 30 C -0.098 4.098 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.061 0.939 34 H 0.207 0.793 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.040 0.960 44 H 0.036 0.964 45 H 0.065 0.935 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.752 5.447 20.198 20.933 hybrid contribution 0.692 0.186 0.965 1.202 sum 1.444 5.633 21.163 21.947 Atomic orbital electron populations 1.22918 0.80144 1.03543 1.00247 1.88000 1.20418 1.23964 1.94358 1.20700 0.93822 0.87540 0.92064 0.89020 1.20829 0.78387 0.81018 0.91194 1.90838 1.45694 1.52087 1.44985 1.47411 1.66840 1.14612 1.05257 1.75548 1.11662 1.14508 0.95345 1.25459 0.97006 0.89476 0.97815 1.21204 1.01624 0.96422 0.96849 1.21386 0.99809 0.95786 0.97658 1.21556 1.01417 0.98307 0.94518 1.21670 1.00130 0.94746 0.98419 1.20433 0.99996 0.95235 0.88899 0.90273 1.19074 0.96997 0.91761 0.92474 1.20856 1.10449 0.99063 1.21418 0.93434 1.24796 0.95161 0.97976 0.95739 1.69924 1.27113 1.30393 1.26860 0.86802 0.80439 0.83734 0.77910 1.20139 1.21681 1.20916 1.19399 0.94563 0.96427 0.98510 1.20920 0.97365 0.97908 0.96719 1.21046 0.94164 0.98598 1.00136 1.21213 0.99501 0.94149 0.98350 1.21216 0.96494 0.99051 0.97023 1.21120 0.93091 0.97756 0.97872 0.93103 0.88910 0.93939 0.79317 0.92423 0.89820 0.92011 0.92039 0.91858 0.92259 0.91241 0.92041 0.96018 0.96381 0.93489 0.85905 0.85739 0.85949 0.85719 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.81 101.05 1.09 1.43 16 2 O -0.35 -5.42 9.21 -55.09 -0.51 -5.92 16 3 C 0.12 1.76 2.72 -29.04 -0.08 1.68 16 4 H 0.09 0.99 7.65 -51.93 -0.40 0.60 16 5 C 0.50 9.83 7.23 -10.99 -0.08 9.75 16 6 O -0.47 -12.00 16.84 -14.32 -0.24 -12.24 16 7 N -0.60 -10.94 6.10 31.22 0.19 -10.75 16 8 N -0.17 -3.78 8.54 35.87 0.31 -3.48 16 9 C 0.10 1.84 6.15 -78.35 -0.48 1.36 16 10 C -0.12 -1.59 5.89 -27.71 -0.16 -1.75 16 11 C -0.11 -1.22 5.92 -26.86 -0.16 -1.38 16 12 C -0.12 -1.44 5.81 -26.77 -0.16 -1.59 16 13 C -0.11 -1.73 5.23 -26.63 -0.14 -1.87 16 14 C -0.03 -0.49 2.43 -91.38 -0.22 -0.72 16 15 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 16 C 0.03 0.89 4.13 -27.88 -0.12 0.77 16 17 C -0.48 -14.16 7.51 -34.44 -0.26 -14.42 16 18 H 0.05 1.41 7.46 -52.48 -0.39 1.02 16 19 C 0.06 1.95 5.46 -17.82 -0.10 1.86 16 20 N -0.90 -29.02 13.29 55.43 0.74 -28.28 16 21 Si 0.88 24.45 29.54 -169.99 -5.02 19.42 16 22 H -0.28 -7.93 7.11 56.52 0.40 -7.53 16 23 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 24 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 25 C -0.09 -1.17 4.92 -104.63 -0.51 -1.69 16 26 C -0.11 -1.15 9.67 -39.58 -0.38 -1.53 16 27 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 28 C -0.11 -1.14 10.05 -39.58 -0.40 -1.54 16 29 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 30 C -0.08 -1.13 9.35 -39.58 -0.37 -1.50 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.37 5.16 6.15 -182.60 -1.12 4.03 16 35 H 0.06 0.67 5.57 -51.93 -0.29 0.38 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.63 8.08 -51.93 -0.42 0.21 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 46 H 0.12 0.92 8.04 -52.48 -0.42 0.50 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 49 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 50 H 0.13 2.04 7.78 -52.49 -0.41 1.63 16 LS Contribution 409.08 15.07 6.16 6.16 Total: -1.00 -38.80 409.08 -10.62 -49.42 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.92 Total: 0.14 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -3.32 Total: -14.48 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 1.23 Total: -42.50 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.75 Total: -18.16 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.02 Total: 19.42 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -38.80 -10.62 -49.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408720127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.813 kcal (2) G-P(sol) polarization free energy of solvation -38.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds