Wall clock time and date at job start Tue Mar 31 2020 05:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 114.00015 * 2 1 4 4 H 1.09004 * 109.46723 * 30.00290 * 3 2 1 5 5 C 1.50699 * 109.47345 * 150.00058 * 3 2 1 6 6 O 1.21298 * 119.99730 * 5.00888 * 5 3 2 7 7 N 1.34775 * 119.99834 * 185.00112 * 5 3 2 8 8 N 1.40100 * 119.99551 * 180.02562 * 7 5 3 9 9 C 1.28014 * 119.99823 * 174.61164 * 8 7 5 10 10 C 1.51274 * 120.84924 * 353.49346 * 9 8 7 11 11 C 1.53230 * 108.53433 * 231.32569 * 10 9 8 12 12 C 1.52962 * 109.40226 * 305.36982 * 11 10 9 13 13 C 1.52955 * 109.81876 * 63.60274 * 12 11 10 14 14 C 1.51266 * 120.85105 * 173.46583 * 9 8 7 15 15 H 1.08999 * 109.62735 * 248.38893 * 14 9 8 16 16 C 1.53001 * 109.78377 * 8.87018 * 14 9 8 17 17 C 1.50700 * 109.46943 * 294.13818 * 16 14 9 18 18 H 1.07998 * 120.00153 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99906 * 180.02562 * 17 16 14 20 20 N 1.31521 * 120.00095 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00056 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47191 * 59.99829 * 21 19 17 23 23 H 1.48499 * 109.47168 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47225 * 300.00005 * 21 19 17 25 25 C 1.50699 * 109.47296 * 270.00828 * 3 2 1 26 26 C 1.38237 * 119.99660 * 324.72087 * 25 3 2 27 27 C 1.38236 * 119.99917 * 179.81415 * 26 25 3 28 28 C 1.38240 * 119.99668 * 0.39492 * 27 26 25 29 29 C 1.38230 * 120.00026 * 359.85816 * 28 27 26 30 30 C 1.38229 * 120.00378 * 359.95788 * 29 28 27 31 31 H 1.08991 * 109.47814 * 59.99833 * 1 2 3 32 32 H 1.09003 * 109.46720 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46853 * 299.99528 * 1 2 3 34 34 H 0.97001 * 120.00126 * 0.02562 * 7 5 3 35 35 H 1.08998 * 109.62513 * 351.03514 * 10 9 8 36 36 H 1.08997 * 109.62670 * 111.41619 * 10 9 8 37 37 H 1.09004 * 109.48171 * 185.39120 * 11 10 9 38 38 H 1.08994 * 109.48337 * 65.35329 * 11 10 9 39 39 H 1.08997 * 109.41589 * 303.49279 * 12 11 10 40 40 H 1.09007 * 109.40980 * 183.70444 * 12 11 10 41 41 H 1.08999 * 109.48407 * 56.37610 * 13 12 11 42 42 H 1.09001 * 109.48539 * 176.40654 * 13 12 11 43 43 H 1.09001 * 109.47351 * 54.13669 * 16 14 9 44 44 H 1.09000 * 109.47116 * 174.14040 * 16 14 9 45 45 H 0.96997 * 120.00058 * 180.02562 * 20 19 17 46 46 H 1.07997 * 120.00184 * 359.97438 * 26 25 3 47 47 H 1.07997 * 120.00383 * 180.23492 * 27 26 25 48 48 H 1.07999 * 119.99794 * 179.83540 * 28 27 26 49 49 H 1.08003 * 119.99685 * 179.97438 * 29 28 27 50 50 H 1.08000 * 120.00251 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3386 1.2640 0.7104 6 8 3.7898 0.2044 1.0912 7 7 4.0253 2.4041 0.9223 8 7 5.2606 2.3654 1.5823 9 6 5.9609 3.4313 1.6927 10 6 5.5463 4.7077 0.9947 11 6 6.7436 5.2394 0.2000 12 6 7.9453 5.3934 1.1338 13 6 8.3605 4.0242 1.6748 14 6 7.2239 3.4468 2.5250 15 1 7.0737 4.0695 3.4068 16 6 7.5775 2.0220 2.9561 17 6 6.5164 1.5023 3.8915 18 1 5.6738 2.1257 4.1520 19 6 6.6212 0.2310 4.4147 20 7 7.6470 -0.5283 4.0970 21 14 5.3055 -0.4135 5.5736 22 1 3.9931 -0.4185 4.8787 23 1 5.6494 -1.7958 5.9931 24 1 5.2283 0.4618 6.7707 25 6 2.2144 1.7645 -1.4208 26 6 2.5648 0.8521 -2.3983 27 6 2.7484 1.2724 -3.7023 28 6 2.5894 2.6066 -4.0272 29 6 2.2440 3.5199 -3.0487 30 6 2.0568 3.0990 -1.7455 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.6644 3.2515 0.6180 35 1 4.7188 4.5015 0.3159 36 1 5.2374 5.4459 1.7348 37 1 6.4921 6.2082 -0.2317 38 1 6.9905 4.5388 -0.5977 39 1 7.6770 6.0452 1.9652 40 1 8.7774 5.8332 0.5839 41 1 8.5691 3.3524 0.8422 42 1 9.2551 4.1317 2.2881 43 1 7.6334 1.3797 2.0773 44 1 8.5411 2.0252 3.4657 45 1 7.7205 -1.4229 4.4648 46 1 2.6927 -0.1896 -2.1437 47 1 3.0185 0.5590 -4.4668 48 1 2.7353 2.9355 -5.0455 49 1 2.1202 4.5623 -3.3026 50 1 1.7866 3.8124 -0.9811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408720128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:10 Heat of formation + Delta-G solvation = -18.402117 kcal Electronic energy + Delta-G solvation = -31101.414930 eV Core-core repulsion = 27094.507564 eV Total energy + Delta-G solvation = -4006.907366 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.30148 -38.99182 -38.29942 -37.25741 -35.11463 -33.38344 -32.55458 -31.36642 -31.09484 -30.88550 -28.29207 -27.55988 -26.16813 -25.59218 -23.00442 -22.76071 -22.34728 -21.35771 -20.52747 -19.94429 -18.87667 -17.54487 -17.09550 -16.72582 -16.01732 -15.96404 -15.79480 -14.91392 -14.73860 -14.67785 -14.37798 -14.30652 -14.20193 -13.83948 -13.64342 -13.57963 -13.31237 -12.98687 -12.85350 -12.59205 -12.45541 -11.89195 -11.72177 -11.63838 -11.48293 -11.18487 -11.15460 -11.00039 -10.85185 -10.70621 -10.38741 -10.30246 -10.23438 -10.13842 -9.87772 -9.63777 -9.45994 -9.12240 -8.91492 -8.82213 -8.70879 -8.07101 -8.00463 -5.69661 -3.65219 1.04086 1.20565 2.45909 2.69857 3.30522 3.52374 3.53545 3.58486 3.66089 3.91759 4.39616 4.63826 4.75081 4.75163 4.78991 4.87233 4.90291 4.93848 4.97298 5.11652 5.21097 5.22168 5.25337 5.28538 5.40146 5.53394 5.53651 5.62761 5.68404 5.69761 5.70975 5.83815 5.84851 5.95093 6.08587 6.12765 6.20157 6.29595 6.30256 6.32795 6.39473 6.56585 6.71912 6.76459 6.85425 6.92056 7.05280 7.56988 7.84245 8.01942 8.20800 8.26242 8.67987 9.04672 9.32842 9.95000 11.43035 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008672 B = 0.004486 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.933244 B = 6240.064977 C = 8675.783545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.120 3.880 4 H 0.093 0.907 5 C 0.527 3.473 6 O -0.462 6.462 7 N -0.595 5.595 8 N -0.168 5.168 9 C 0.097 3.903 10 C -0.121 4.121 11 C -0.106 4.106 12 C -0.120 4.120 13 C -0.113 4.113 14 C -0.024 4.024 15 H 0.081 0.919 16 C 0.033 3.967 17 C -0.482 4.482 18 H 0.047 0.953 19 C 0.063 3.937 20 N -0.900 5.900 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.283 1.283 25 C -0.114 4.114 26 C -0.084 4.084 27 C -0.120 4.120 28 C -0.115 4.115 29 C -0.121 4.121 30 C -0.113 4.113 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.045 0.955 34 H 0.368 0.632 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.023 0.977 44 H 0.018 0.982 45 H 0.256 0.744 46 H 0.132 0.868 47 H 0.124 0.876 48 H 0.122 0.878 49 H 0.124 0.876 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.107 13.440 -15.695 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C 0.057 3.943 4 H 0.111 0.889 5 C 0.310 3.690 6 O -0.330 6.330 7 N -0.339 5.339 8 N 0.031 4.969 9 C -0.098 4.098 10 C -0.161 4.161 11 C -0.144 4.144 12 C -0.158 4.158 13 C -0.151 4.151 14 C -0.044 4.044 15 H 0.099 0.901 16 C -0.004 4.004 17 C -0.521 4.521 18 H 0.065 0.935 19 C -0.137 4.137 20 N -0.541 5.541 21 Si 0.712 3.288 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.209 1.209 25 C -0.115 4.115 26 C -0.102 4.102 27 C -0.138 4.138 28 C -0.133 4.133 29 C -0.139 4.139 30 C -0.131 4.131 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.207 0.793 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.036 0.964 45 H 0.066 0.934 46 H 0.150 0.850 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.142 0.858 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.816 11.246 -15.231 22.318 hybrid contribution -1.416 1.032 0.129 1.757 sum -13.232 12.279 -15.102 23.536 Atomic orbital electron populations 1.22910 0.80476 1.03389 1.00064 1.88075 1.19774 1.24060 1.94593 1.20679 0.94122 0.87270 0.92265 0.88914 1.19743 0.85189 0.83906 0.80164 1.90837 1.67254 1.28822 1.46072 1.47196 1.18847 1.08765 1.59073 1.75529 0.91485 1.23281 1.06604 1.25478 0.97534 0.89959 0.96873 1.21285 0.98453 0.97077 0.99322 1.21428 0.94699 1.00290 0.98025 1.21555 0.97104 0.98239 0.98876 1.21686 0.98399 0.95216 0.99820 1.20435 0.87619 1.02074 0.94318 0.90067 1.19074 0.96719 0.87731 0.96865 1.20853 1.06559 0.99080 1.25594 0.93512 1.24812 0.95176 0.96892 0.96822 1.69927 1.29766 1.09171 1.45212 0.86795 0.83375 0.77722 0.80920 1.20265 1.21617 1.20898 1.20098 1.02270 0.94259 0.94845 1.21102 0.96299 1.00423 0.92340 1.21213 1.00059 0.96111 0.96422 1.21215 0.99203 0.93467 0.99430 1.21068 1.00294 0.99642 0.92867 1.20973 1.00544 0.94603 0.96982 0.93808 0.88919 0.93672 0.79280 0.92293 0.90039 0.92033 0.91957 0.91910 0.92286 0.91994 0.91317 0.95835 0.96366 0.93433 0.85020 0.85764 0.85990 0.85812 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.81 101.05 1.09 1.39 16 2 O -0.35 -5.38 9.04 -55.09 -0.50 -5.87 16 3 C 0.12 1.73 2.73 -29.04 -0.08 1.65 16 4 H 0.09 1.04 7.70 -51.93 -0.40 0.64 16 5 C 0.53 10.49 7.28 -10.99 -0.08 10.41 16 6 O -0.46 -12.11 16.84 -14.32 -0.24 -12.35 16 7 N -0.59 -10.98 6.03 31.22 0.19 -10.79 16 8 N -0.17 -3.76 8.63 35.87 0.31 -3.45 16 9 C 0.10 1.83 6.16 -78.35 -0.48 1.35 16 10 C -0.12 -1.60 5.80 -27.48 -0.16 -1.76 16 11 C -0.11 -1.24 5.94 -26.63 -0.16 -1.40 16 12 C -0.12 -1.46 5.81 -26.77 -0.16 -1.62 16 13 C -0.11 -1.79 5.23 -26.63 -0.14 -1.93 16 14 C -0.02 -0.47 2.41 -91.37 -0.22 -0.69 16 15 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 16 C 0.03 0.87 4.13 -27.88 -0.12 0.76 16 17 C -0.48 -14.19 7.56 -34.44 -0.26 -14.45 16 18 H 0.05 1.37 7.53 -52.49 -0.40 0.97 16 19 C 0.06 1.94 5.46 -17.82 -0.10 1.85 16 20 N -0.90 -29.00 13.29 55.43 0.74 -28.26 16 21 Si 0.88 24.20 29.54 -169.99 -5.02 19.18 16 22 H -0.28 -7.84 7.11 56.52 0.40 -7.44 16 23 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 24 H -0.28 -7.41 7.11 56.52 0.40 -7.00 16 25 C -0.11 -1.42 4.91 -104.62 -0.51 -1.93 16 26 C -0.08 -1.07 9.35 -39.58 -0.37 -1.44 16 27 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 28 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 29 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 30 C -0.11 -1.11 9.52 -39.59 -0.38 -1.49 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.37 5.16 6.18 -182.60 -1.13 4.03 16 35 H 0.06 0.70 5.83 -51.93 -0.30 0.40 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.69 8.06 -51.93 -0.42 0.27 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 46 H 0.13 1.83 7.64 -52.49 -0.40 1.43 16 47 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 49 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 50 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 409.03 15.07 6.16 6.16 Total: -1.00 -38.94 409.03 -10.61 -49.55 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.94 Total: -0.29 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -3.31 Total: -13.89 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 1.23 Total: -42.50 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.74 Total: -18.23 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.02 Total: 19.18 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -38.94 -10.61 -49.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408720128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.153 kcal (2) G-P(sol) polarization free energy of solvation -38.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds