Wall clock time and date at job start Tue Mar 31 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99928 * 2 1 4 4 H 1.08996 * 109.47173 * 30.00319 * 3 2 1 5 5 C 1.50705 * 109.47118 * 149.99704 * 3 2 1 6 6 O 1.21309 * 119.99786 * 5.00025 * 5 3 2 7 7 N 1.34770 * 120.00363 * 185.00143 * 5 3 2 8 8 N 1.40099 * 120.00186 * 180.02562 * 7 5 3 9 9 C 1.28014 * 120.00083 * 185.28415 * 8 7 5 10 10 C 1.51344 * 120.89013 * 355.36766 * 9 8 7 11 11 C 1.53228 * 108.68275 * 128.77204 * 10 9 8 12 12 C 1.52961 * 109.40403 * 54.52396 * 11 10 9 13 13 C 1.52965 * 109.81425 * 296.39627 * 12 11 10 14 14 C 1.51268 * 120.85295 * 175.14568 * 9 8 7 15 15 H 1.09000 * 109.62271 * 111.41588 * 14 9 8 16 16 C 1.52999 * 109.62419 * 351.04162 * 14 9 8 17 17 C 1.50705 * 109.47133 * 65.37618 * 16 14 9 18 18 H 1.08002 * 119.99972 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99922 * 179.97438 * 17 16 14 20 20 N 1.31516 * 120.00473 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99956 * 179.72799 * 19 17 16 22 22 H 1.48498 * 109.47264 * 180.27525 * 21 19 17 23 23 H 1.48498 * 109.46907 * 300.27540 * 21 19 17 24 24 H 1.48507 * 109.47130 * 60.27833 * 21 19 17 25 25 C 1.50696 * 109.47259 * 269.99500 * 3 2 1 26 26 C 1.38233 * 120.00064 * 324.72827 * 25 3 2 27 27 C 1.38236 * 120.00004 * 179.76406 * 26 25 3 28 28 C 1.38239 * 119.99808 * 0.50770 * 27 26 25 29 29 C 1.38239 * 119.99914 * 359.74413 * 28 27 26 30 30 C 1.38229 * 120.00065 * 0.02562 * 29 28 27 31 31 H 1.08991 * 109.47450 * 300.00255 * 1 2 3 32 32 H 1.09000 * 109.46811 * 60.00281 * 1 2 3 33 33 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 34 34 H 0.97007 * 119.99548 * 359.97438 * 7 5 3 35 35 H 1.09001 * 109.63911 * 8.96052 * 10 9 8 36 36 H 1.08993 * 109.61761 * 248.57619 * 10 9 8 37 37 H 1.09004 * 109.48463 * 294.53859 * 11 10 9 38 38 H 1.09007 * 109.47797 * 174.49852 * 11 10 9 39 39 H 1.08998 * 109.40946 * 176.29634 * 12 11 10 40 40 H 1.08994 * 109.41292 * 56.50529 * 12 11 10 41 41 H 1.09005 * 109.47858 * 303.62067 * 13 12 11 42 42 H 1.08996 * 109.49058 * 183.59038 * 13 12 11 43 43 H 1.08998 * 109.47205 * 305.38140 * 16 14 9 44 44 H 1.08997 * 109.47292 * 185.37959 * 16 14 9 45 45 H 0.97004 * 119.99370 * 359.72396 * 20 19 17 46 46 H 1.08000 * 119.99919 * 0.02562 * 26 25 3 47 47 H 1.07997 * 119.99994 * 180.23691 * 27 26 25 48 48 H 1.08002 * 119.99711 * 179.72605 * 28 27 26 49 49 H 1.08000 * 119.99232 * 179.97438 * 29 28 27 50 50 H 1.07997 * 119.99916 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 3.3386 1.2639 0.7105 6 8 3.7897 0.2042 1.0916 7 7 4.0254 2.4039 0.9225 8 7 5.2606 2.3652 1.5826 9 6 5.8650 3.4554 1.8740 10 6 5.3163 4.7922 1.4243 11 6 5.2368 5.7237 2.6383 12 6 6.6083 5.7993 3.3115 13 6 6.9984 4.4217 3.8497 14 6 7.1442 3.4412 2.6813 15 1 7.9790 3.7455 2.0499 16 6 7.3954 2.0319 3.2214 17 6 7.6507 1.0915 2.0717 18 1 7.6357 1.4621 1.0574 19 6 7.9045 -0.2416 2.3150 20 7 7.9233 -0.6929 3.5502 21 14 8.2134 -1.4088 0.8896 22 1 8.4526 -2.7776 1.4134 23 1 7.0287 -1.4214 -0.0056 24 1 9.4048 -0.9553 0.1277 25 6 2.2146 1.7643 -1.4208 26 6 2.5652 0.8518 -2.3982 27 6 2.7479 1.2719 -3.7024 28 6 2.5904 2.6064 -4.0272 29 6 2.2449 3.5197 -3.0487 30 6 2.0575 3.0988 -1.7455 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 3.6648 3.2512 0.6175 35 1 4.3210 4.6561 1.0014 36 1 5.9771 5.2251 0.6733 37 1 4.5049 5.3358 3.3469 38 1 4.9360 6.7197 2.3132 39 1 6.5687 6.5122 4.1351 40 1 7.3510 6.1280 2.5846 41 1 6.2248 4.0647 4.5296 42 1 7.9459 4.4948 4.3835 43 1 6.5214 1.6953 3.7788 44 1 8.2637 2.0447 3.8801 45 1 7.7625 -0.0868 4.2903 46 1 2.6921 -0.1901 -2.1436 47 1 3.0180 0.5584 -4.4667 48 1 2.7375 2.9353 -5.0453 49 1 2.1223 4.5623 -3.3025 50 1 1.7881 3.8125 -0.9810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408720129.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:16 Heat of formation + Delta-G solvation = -20.491461 kcal Electronic energy + Delta-G solvation = -31122.931618 eV Core-core repulsion = 27115.933651 eV Total energy + Delta-G solvation = -4006.997967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.30736 -39.04933 -38.32807 -37.28030 -35.16483 -33.66041 -32.57496 -31.37233 -31.07422 -30.91267 -28.28564 -27.50311 -25.97013 -25.52069 -22.86579 -22.74092 -22.39516 -21.46741 -20.68177 -20.01473 -18.94286 -17.54645 -17.16468 -16.76129 -16.37163 -16.01134 -15.86938 -14.95658 -14.73416 -14.66922 -14.42980 -14.29003 -14.02875 -13.73323 -13.56448 -13.45743 -13.37825 -13.08192 -12.83314 -12.67629 -12.52422 -12.31105 -11.70591 -11.57019 -11.48895 -11.32925 -11.15091 -11.07281 -10.80449 -10.65049 -10.41848 -10.31986 -10.15231 -10.07226 -9.90512 -9.77381 -9.56576 -9.09881 -8.90806 -8.79082 -8.30663 -8.08284 -7.97259 -6.00605 -3.63509 1.06004 1.23026 2.41502 2.67087 3.27598 3.54251 3.63294 3.76337 3.88218 3.89220 4.39530 4.63492 4.71267 4.79789 4.81488 4.86073 4.86722 4.87957 4.98423 5.03933 5.16346 5.20423 5.20681 5.29642 5.42308 5.44729 5.52225 5.54465 5.60605 5.71684 5.76338 5.79088 5.86007 5.87543 6.01255 6.04462 6.20113 6.21880 6.30188 6.32076 6.35431 6.46203 6.61742 6.75915 6.78861 6.88326 6.90911 7.49402 7.58704 7.73181 8.17490 8.50506 8.79975 9.00786 9.23319 10.02747 11.40987 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008257 B = 0.004403 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.183010 B = 6358.357184 C = 8023.572471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.122 3.878 4 H 0.092 0.908 5 C 0.526 3.474 6 O -0.460 6.460 7 N -0.596 5.596 8 N -0.165 5.165 9 C 0.097 3.903 10 C -0.120 4.120 11 C -0.108 4.108 12 C -0.120 4.120 13 C -0.112 4.112 14 C -0.017 4.017 15 H 0.080 0.920 16 C 0.020 3.980 17 C -0.560 4.560 18 H 0.042 0.958 19 C 0.020 3.980 20 N -0.922 5.922 21 Si 1.060 2.940 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.294 1.294 25 C -0.115 4.115 26 C -0.083 4.083 27 C -0.119 4.119 28 C -0.115 4.115 29 C -0.121 4.121 30 C -0.113 4.113 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.093 0.907 34 H 0.368 0.632 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.012 0.988 44 H 0.008 0.992 45 H 0.264 0.736 46 H 0.132 0.868 47 H 0.125 0.875 48 H 0.122 0.878 49 H 0.124 0.876 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.495 15.002 -10.597 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C 0.058 3.942 4 H 0.110 0.890 5 C 0.309 3.691 6 O -0.327 6.327 7 N -0.341 5.341 8 N 0.033 4.967 9 C -0.099 4.099 10 C -0.160 4.160 11 C -0.146 4.146 12 C -0.158 4.158 13 C -0.151 4.151 14 C -0.038 4.038 15 H 0.098 0.902 16 C -0.017 4.017 17 C -0.598 4.598 18 H 0.060 0.940 19 C -0.182 4.182 20 N -0.560 5.560 21 Si 0.889 3.111 22 H -0.211 1.211 23 H -0.214 1.214 24 H -0.221 1.221 25 C -0.116 4.116 26 C -0.101 4.101 27 C -0.137 4.137 28 C -0.133 4.133 29 C -0.139 4.139 30 C -0.131 4.131 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.207 0.793 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.031 0.969 44 H 0.026 0.974 45 H 0.075 0.925 46 H 0.150 0.850 47 H 0.143 0.857 48 H 0.140 0.860 49 H 0.142 0.858 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.854 11.373 -10.732 21.568 hybrid contribution -1.031 3.151 -0.180 3.320 sum -15.885 14.524 -10.912 24.132 Atomic orbital electron populations 1.22910 0.80474 1.03411 1.00034 1.88086 1.19758 1.24019 1.94591 1.20658 0.93959 0.87237 0.92321 0.88983 1.19782 0.85178 0.83876 0.80282 1.90855 1.67074 1.28686 1.46108 1.47248 1.19127 1.08826 1.58890 1.75556 0.91650 1.23522 1.05941 1.25415 0.98314 0.89110 0.97029 1.21281 1.00447 0.95236 0.99076 1.21463 0.98268 0.98344 0.96553 1.21546 0.96517 0.97778 0.99918 1.21684 1.01728 0.93730 0.97926 1.20266 0.90809 0.98929 0.93810 0.90177 1.19199 0.95927 0.89444 0.97086 1.21691 1.50478 0.95180 0.92485 0.94009 1.25504 0.94563 0.97060 1.01089 1.70778 1.47703 1.38611 0.98887 0.83688 0.75966 0.76216 0.75187 1.21127 1.21370 1.22108 1.20084 1.02413 0.94274 0.94830 1.21114 0.96107 1.00489 0.92349 1.21222 0.99942 0.96131 0.96452 1.21219 0.99131 0.93460 0.99446 1.21063 1.00374 0.99618 0.92886 1.20950 1.00660 0.94551 0.96957 0.93718 0.93807 0.88880 0.79296 0.92377 0.89774 0.91986 0.91911 0.92170 0.91812 0.92092 0.91286 0.96929 0.97388 0.92549 0.84966 0.85710 0.85969 0.85828 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.81 101.05 1.09 1.38 16 2 O -0.35 -5.33 9.04 -55.09 -0.50 -5.83 16 3 C 0.12 1.75 2.73 -29.03 -0.08 1.67 16 4 H 0.09 1.00 7.70 -51.93 -0.40 0.60 16 5 C 0.53 10.50 7.28 -10.99 -0.08 10.42 16 6 O -0.46 -12.12 16.84 -14.33 -0.24 -12.36 16 7 N -0.60 -11.05 6.10 31.22 0.19 -10.86 16 8 N -0.17 -3.75 8.57 35.89 0.31 -3.44 16 9 C 0.10 1.84 6.17 -78.32 -0.48 1.36 16 10 C -0.12 -1.59 5.91 -27.45 -0.16 -1.76 16 11 C -0.11 -1.22 5.94 -26.63 -0.16 -1.38 16 12 C -0.12 -1.44 5.81 -26.77 -0.16 -1.59 16 13 C -0.11 -1.76 5.24 -26.63 -0.14 -1.90 16 14 C -0.02 -0.35 2.42 -91.38 -0.22 -0.57 16 15 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 16 C 0.02 0.54 3.44 -27.88 -0.10 0.44 16 17 C -0.56 -16.74 7.52 -34.44 -0.26 -17.00 16 18 H 0.04 1.26 7.49 -52.49 -0.39 0.87 16 19 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 20 N -0.92 -30.51 13.65 55.43 0.76 -29.75 16 21 Si 1.06 28.95 29.90 -169.99 -5.08 23.86 16 22 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 23 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 C -0.12 -1.48 4.91 -104.63 -0.51 -2.00 16 26 C -0.08 -1.12 9.35 -39.58 -0.37 -1.49 16 27 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 28 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 29 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 30 C -0.11 -1.15 9.51 -39.58 -0.38 -1.53 16 31 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.37 5.18 5.99 -182.59 -1.09 4.08 16 35 H 0.06 0.68 5.58 -51.93 -0.29 0.39 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.01 0.36 7.94 -51.93 -0.41 -0.05 16 44 H 0.01 0.22 8.00 -51.93 -0.42 -0.20 16 45 H 0.26 8.65 7.22 -40.82 -0.29 8.35 16 46 H 0.13 1.95 7.64 -52.49 -0.40 1.55 16 47 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 50 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 407.35 15.07 6.14 6.14 Total: -1.00 -39.90 407.35 -10.55 -50.46 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.83 Total: -0.03 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -3.29 Total: -18.19 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 1.25 Total: -44.05 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.74 Total: -18.19 kcal Atomic # 14 Polarization: 28.95 SS G_CDS: -5.08 Total: 23.86 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -39.90 -10.55 -50.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408720129.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.967 kcal (2) G-P(sol) polarization free energy of solvation -39.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds