Wall clock time and date at job start Tue Mar 31 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 114.00180 * 2 1 4 4 H 1.09000 * 109.47577 * 29.99792 * 3 2 1 5 5 C 1.50706 * 109.46775 * 269.99738 * 3 2 1 6 6 O 1.21295 * 120.00119 * 355.27932 * 5 3 2 7 7 N 1.34785 * 119.99611 * 175.00093 * 5 3 2 8 8 N 1.40104 * 119.99368 * 179.97438 * 7 5 3 9 9 C 1.28009 * 119.99500 * 185.38166 * 8 7 5 10 10 C 1.51270 * 120.85300 * 6.27298 * 9 8 7 11 11 C 1.53656 * 108.31477 * 128.61258 * 10 9 8 12 12 C 1.52955 * 109.32807 * 54.86103 * 11 10 9 13 13 C 1.52966 * 109.81435 * 296.27714 * 12 11 10 14 14 C 1.51270 * 120.85106 * 186.54369 * 9 8 7 15 15 H 1.09002 * 109.62509 * 111.61566 * 14 9 8 16 16 C 1.53001 * 109.62393 * 351.23547 * 14 9 8 17 17 C 1.50706 * 109.46982 * 64.99955 * 16 14 9 18 18 H 1.07995 * 119.99746 * 0.02562 * 17 16 14 19 19 C 1.37872 * 119.99752 * 179.97438 * 17 16 14 20 20 N 1.31520 * 119.99862 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00525 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47405 * 89.99497 * 21 19 17 23 23 H 1.48496 * 109.47419 * 210.00235 * 21 19 17 24 24 H 1.48501 * 109.46793 * 330.00105 * 21 19 17 25 25 C 1.50705 * 109.47190 * 150.00090 * 3 2 1 26 26 C 1.38228 * 119.99983 * 39.72343 * 25 3 2 27 27 C 1.38234 * 120.00115 * 179.76850 * 26 25 3 28 28 C 1.38234 * 119.99594 * 0.50639 * 27 26 25 29 29 C 1.38230 * 120.00241 * 359.74637 * 28 27 26 30 30 C 1.38234 * 119.99863 * 219.99835 * 25 3 2 31 31 H 1.09004 * 109.47070 * 300.00341 * 1 2 3 32 32 H 1.09003 * 109.46991 * 59.99871 * 1 2 3 33 33 H 1.09001 * 109.47519 * 180.02562 * 1 2 3 34 34 H 0.96993 * 120.00423 * 0.02562 * 7 5 3 35 35 H 1.09004 * 109.62607 * 248.38955 * 10 9 8 36 36 H 1.09009 * 109.62311 * 8.95034 * 10 9 8 37 37 H 1.09006 * 109.62540 * 294.83863 * 11 10 9 38 38 H 1.09003 * 109.41614 * 174.75411 * 11 10 9 39 39 H 1.08995 * 109.41934 * 176.16947 * 12 11 10 40 40 H 1.09003 * 109.41183 * 56.37381 * 12 11 10 41 41 H 1.09003 * 109.47681 * 303.61217 * 13 12 11 42 42 H 1.09003 * 109.49085 * 183.58117 * 13 12 11 43 43 H 1.09000 * 109.47226 * 184.99716 * 16 14 9 44 44 H 1.09000 * 109.47202 * 305.00182 * 16 14 9 45 45 H 0.97001 * 119.99915 * 180.02562 * 20 19 17 46 46 H 1.08003 * 120.00122 * 359.97438 * 26 25 3 47 47 H 1.08001 * 120.00107 * 180.23234 * 27 26 25 48 48 H 1.08003 * 119.99895 * 179.72677 * 28 27 26 49 49 H 1.08001 * 120.00181 * 179.97438 * 29 28 27 50 50 H 1.07999 * 120.00253 * 359.97438 * 30 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2146 1.7642 -1.4209 6 8 1.9744 1.0120 -2.3416 7 7 2.6591 3.0123 -1.6687 8 7 2.8495 3.4386 -2.9896 9 6 3.3682 4.5853 -3.2235 10 6 3.9111 5.4356 -2.0964 11 6 5.3415 5.8633 -2.4599 12 6 5.3314 6.5568 -3.8232 13 6 4.8906 5.5686 -4.9044 14 6 3.4485 5.1274 -4.6335 15 1 2.7789 5.9814 -4.7360 16 6 3.0455 4.0361 -5.6272 17 6 1.5958 3.6794 -5.4210 18 1 1.0196 4.1812 -4.6579 19 6 1.0051 2.7133 -6.2074 20 7 -0.2599 2.4016 -6.0272 21 14 2.0015 1.8458 -7.5280 22 1 2.6384 0.6343 -6.9519 23 1 1.1059 1.4508 -8.6446 24 1 3.0527 2.7628 -8.0373 25 6 3.3387 1.2638 0.7104 26 6 4.1871 0.1880 0.5271 27 6 5.4077 0.1521 1.1750 28 6 5.7753 1.1870 2.0143 29 6 4.9247 2.2604 2.2017 30 6 3.7063 2.2988 1.5498 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.8477 3.6151 -0.9325 35 1 3.2836 6.3177 -1.9682 36 1 3.9245 4.8553 -1.1737 37 1 5.9862 4.9855 -2.5033 38 1 5.7167 6.5531 -1.7039 39 1 6.3330 6.9210 -4.0519 40 1 4.6384 7.3977 -3.7968 41 1 5.5461 4.6978 -4.8900 42 1 4.9463 6.0494 -5.8811 43 1 3.1889 4.4001 -6.6446 44 1 3.6633 3.1525 -5.4670 45 1 -0.6755 1.7216 -6.5802 46 1 3.8978 -0.6230 -0.1249 47 1 6.0722 -0.6867 1.0288 48 1 6.7271 1.1569 2.5240 49 1 5.2117 3.0688 2.8578 50 1 3.0418 3.1374 1.6961 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408720131.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:22 Heat of formation + Delta-G solvation = -16.026736 kcal Electronic energy + Delta-G solvation = -31169.538741 eV Core-core repulsion = 27162.734379 eV Total energy + Delta-G solvation = -4006.804362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.24975 -38.99709 -38.38307 -37.06783 -35.10276 -33.42510 -32.60811 -31.47138 -31.08510 -30.93179 -28.34506 -27.52092 -26.43556 -25.60782 -22.90790 -22.71943 -22.28333 -21.34044 -20.43087 -19.89269 -18.89544 -17.50368 -17.09059 -16.70392 -16.45214 -15.93784 -15.78838 -14.87919 -14.67027 -14.57342 -14.31787 -14.23732 -14.14100 -13.87218 -13.66271 -13.55625 -13.31839 -12.85379 -12.83562 -12.58617 -12.40787 -12.32270 -11.81155 -11.53490 -11.40535 -11.29475 -11.18716 -11.09787 -10.92979 -10.84354 -10.46579 -10.41406 -10.37655 -9.95471 -9.85178 -9.53272 -9.39120 -9.08527 -9.00209 -8.88761 -8.70939 -8.23167 -8.02072 -5.74900 -3.66385 1.07377 1.24203 2.46307 2.89648 3.29984 3.49191 3.51692 3.57696 3.59888 3.90318 4.50083 4.69287 4.71693 4.73965 4.83136 4.86782 4.92012 4.94029 4.99044 5.06918 5.19270 5.30734 5.33944 5.43469 5.46770 5.55466 5.57050 5.61844 5.63947 5.72183 5.80517 5.82247 5.87801 5.88047 6.03078 6.06551 6.21901 6.23583 6.31106 6.35004 6.35529 6.46235 6.62931 6.73651 6.78949 6.83491 6.95903 7.36575 7.55949 7.62278 8.04672 8.21994 8.79447 9.05705 9.28866 9.89470 11.39977 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.008931 B = 0.004415 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.527346 B = 6340.083812 C = 8437.628640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.121 3.879 4 H 0.093 0.907 5 C 0.504 3.496 6 O -0.466 6.466 7 N -0.594 5.594 8 N -0.165 5.165 9 C 0.090 3.910 10 C -0.120 4.120 11 C -0.106 4.106 12 C -0.120 4.120 13 C -0.115 4.115 14 C -0.013 4.013 15 H 0.086 0.914 16 C -0.005 4.005 17 C -0.481 4.481 18 H 0.067 0.933 19 C 0.071 3.929 20 N -0.907 5.907 21 Si 0.873 3.127 22 H -0.279 1.279 23 H -0.293 1.293 24 H -0.269 1.269 25 C -0.087 4.087 26 C -0.082 4.082 27 C -0.121 4.121 28 C -0.115 4.115 29 C -0.121 4.121 30 C -0.111 4.111 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.369 0.631 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.017 0.983 44 H 0.016 0.984 45 H 0.257 0.743 46 H 0.131 0.869 47 H 0.124 0.876 48 H 0.122 0.878 49 H 0.125 0.875 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.406 4.355 18.764 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C 0.058 3.942 4 H 0.111 0.889 5 C 0.287 3.713 6 O -0.334 6.334 7 N -0.338 5.338 8 N 0.033 4.967 9 C -0.105 4.105 10 C -0.161 4.161 11 C -0.145 4.145 12 C -0.157 4.157 13 C -0.154 4.154 14 C -0.034 4.034 15 H 0.104 0.896 16 C -0.043 4.043 17 C -0.520 4.520 18 H 0.085 0.915 19 C -0.129 4.129 20 N -0.547 5.547 21 Si 0.701 3.299 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.193 1.193 25 C -0.087 4.087 26 C -0.100 4.100 27 C -0.139 4.139 28 C -0.133 4.133 29 C -0.139 4.139 30 C -0.129 4.129 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.207 0.793 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.067 0.933 46 H 0.149 0.851 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.143 0.857 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.747 2.539 17.753 20.907 hybrid contribution 0.510 0.527 0.262 0.778 sum 11.257 3.066 18.015 21.463 Atomic orbital electron populations 1.22942 0.79899 1.03553 1.00551 1.87966 1.20631 1.23879 1.94380 1.20698 0.93747 0.87696 0.92068 0.88941 1.20814 0.78261 0.81005 0.91192 1.90830 1.45242 1.52382 1.44970 1.47324 1.66724 1.14734 1.05034 1.75471 1.11021 1.14254 0.95950 1.25347 0.95658 0.91819 0.97703 1.21351 0.97896 1.00031 0.96786 1.21507 0.95260 1.00271 0.97422 1.21539 1.00974 0.98544 0.94665 1.21714 0.96709 0.98689 0.98252 1.20198 0.95083 0.99317 0.88802 0.89569 1.19579 0.98322 0.93118 0.93257 1.20796 0.93007 1.20571 1.17602 0.91510 1.24853 0.94563 0.96342 0.97150 1.69895 1.11577 1.32742 1.40529 0.86902 0.80378 0.80756 0.81862 1.20489 1.21917 1.19346 1.19429 0.94572 0.96308 0.98402 1.21108 0.93068 0.97713 0.98097 1.21205 0.96483 0.98986 0.97191 1.21207 0.99546 0.94203 0.98366 1.21052 0.94137 0.98622 1.00081 1.20953 0.97340 0.98020 0.96614 0.93945 0.92711 0.88927 0.79258 0.89971 0.92154 0.91970 0.91953 0.92223 0.91765 0.92051 0.91328 0.96449 0.96523 0.93319 0.85098 0.85772 0.85988 0.85741 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.81 101.05 1.09 1.45 16 2 O -0.35 -5.59 9.20 -55.10 -0.51 -6.10 16 3 C 0.12 1.79 2.72 -29.03 -0.08 1.71 16 4 H 0.09 1.09 7.65 -51.93 -0.40 0.69 16 5 C 0.50 10.05 7.23 -10.98 -0.08 9.97 16 6 O -0.47 -12.12 16.84 -14.32 -0.24 -12.36 16 7 N -0.59 -11.06 6.03 31.22 0.19 -10.87 16 8 N -0.17 -3.70 8.54 35.87 0.31 -3.39 16 9 C 0.09 1.68 6.13 -78.35 -0.48 1.20 16 10 C -0.12 -1.58 5.83 -27.26 -0.16 -1.74 16 11 C -0.11 -1.20 5.95 -26.41 -0.16 -1.36 16 12 C -0.12 -1.38 5.81 -26.77 -0.16 -1.54 16 13 C -0.12 -1.71 5.24 -26.63 -0.14 -1.85 16 14 C -0.01 -0.26 2.42 -91.38 -0.22 -0.48 16 15 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 16 C -0.01 -0.13 3.21 -27.88 -0.09 -0.22 16 17 C -0.48 -14.18 8.06 -34.44 -0.28 -14.46 16 18 H 0.07 2.13 7.71 -52.49 -0.40 1.73 16 19 C 0.07 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.91 -29.90 13.96 55.43 0.77 -29.13 16 21 Si 0.87 23.70 27.47 -169.99 -4.67 19.03 16 22 H -0.28 -7.78 7.11 56.52 0.40 -7.38 16 23 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 24 H -0.27 -6.83 6.54 56.52 0.37 -6.46 16 25 C -0.09 -1.12 4.92 -104.62 -0.52 -1.63 16 26 C -0.08 -1.09 9.35 -39.59 -0.37 -1.46 16 27 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 28 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 29 C -0.12 -1.09 10.05 -39.59 -0.40 -1.48 16 30 C -0.11 -1.12 9.67 -39.58 -0.38 -1.50 16 31 H 0.04 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.37 5.28 6.34 -182.60 -1.16 4.12 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.72 5.82 -51.92 -0.30 0.42 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 44 H 0.02 0.43 7.51 -51.93 -0.39 0.04 16 45 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 46 H 0.13 1.90 7.77 -52.48 -0.41 1.49 16 47 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 48 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 49 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 50 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 LS Contribution 405.79 15.07 6.12 6.12 Total: -1.00 -39.10 405.79 -10.28 -49.37 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -8.94 Total: 1.79 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -3.30 Total: -14.45 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 1.27 Total: -43.39 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.75 Total: -18.46 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.67 Total: 19.03 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -39.10 -10.28 -49.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408720131.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.345 kcal (2) G-P(sol) polarization free energy of solvation -39.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds