Wall clock time and date at job start Tue Mar 31 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29407 * 1 3 3 Si 1.86801 * 119.99744 * 2 1 4 4 H 1.48504 * 109.46824 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47249 * 300.00188 * 3 2 1 6 6 H 1.48503 * 109.47285 * 59.99995 * 3 2 1 7 7 C 1.46577 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99398 * 180.02562 * 7 2 1 9 9 O 1.22318 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.35609 * 116.99932 * 185.08984 * 9 7 2 11 11 C 1.39134 * 119.90978 * 354.32198 * 10 9 7 12 12 C 1.37675 * 120.09363 * 180.02562 * 11 10 9 13 13 C 1.39892 * 119.90465 * 359.97438 * 12 11 10 14 14 C 1.47220 * 120.08655 * 179.97438 * 13 12 11 15 15 C 1.34452 * 120.00103 * 180.02562 * 14 13 12 16 16 C 1.47207 * 119.99961 * 180.02562 * 15 14 13 17 17 N 1.32904 * 119.19786 * 180.02562 * 16 15 14 18 18 C 1.32736 * 120.75619 * 180.02562 * 17 16 15 19 19 O 1.35548 * 120.41233 * 179.97438 * 18 17 16 20 20 C 1.39163 * 119.18143 * 359.97438 * 18 17 16 21 21 N 1.48018 * 120.73775 * 180.02562 * 20 18 17 22 22 O 1.31704 * 120.00190 * 269.95567 * 21 20 18 23 23 O 1.31704 * 120.00055 * 89.96081 * 21 20 18 24 24 C 1.39164 * 118.52807 * 359.97438 * 20 18 17 25 25 O 1.35543 * 120.41185 * 180.02562 * 24 20 18 26 26 N 1.32744 * 119.17842 * 0.02562 * 24 20 18 27 27 C 1.39890 * 119.82134 * 0.25518 * 13 12 11 28 28 C 1.37671 * 119.90712 * 359.49070 * 27 13 12 29 29 H 0.96998 * 119.99514 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.95149 * 0.02562 * 11 10 9 31 31 H 1.08004 * 120.04287 * 180.02562 * 12 11 10 32 32 H 1.08001 * 120.00085 * 0.02562 * 14 13 12 33 33 H 1.08001 * 119.99811 * 0.02562 * 15 14 13 34 34 H 0.96698 * 113.99717 * 89.99924 * 19 18 17 35 35 H 0.96700 * 113.99978 * 269.98331 * 25 24 20 36 36 H 1.08000 * 120.04378 * 179.72373 * 27 13 12 37 37 H 1.08004 * 119.95303 * 180.25069 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2941 0.0000 0.0000 3 14 2.2280 1.6178 0.0000 4 1 3.6880 1.3464 0.0006 5 1 1.8692 2.3965 -1.2125 6 1 1.8692 2.3965 1.2125 7 6 2.0270 -1.2694 -0.0006 8 1 3.1070 -1.2693 -0.0001 9 8 1.4154 -2.3287 -0.0015 10 6 2.1498 -3.4637 0.1052 11 6 3.5393 -3.3949 0.0901 12 6 4.2887 -4.5448 0.1977 13 6 3.6510 -5.7836 0.3228 14 6 4.4483 -7.0159 0.4375 15 6 3.8336 -8.2057 0.5572 16 6 4.6309 -9.4378 0.6725 17 7 4.0068 -10.6053 0.7895 18 6 4.6951 -11.7352 0.8960 19 8 4.0515 -12.9221 1.0156 20 6 6.0859 -11.6863 0.8834 21 7 6.8875 -12.9252 0.9993 22 8 7.2513 -13.3656 2.1860 23 8 7.2371 -13.5872 -0.0843 24 6 6.7062 -10.4469 0.7583 25 8 8.0584 -10.3551 0.7411 26 7 5.9572 -9.3557 0.6559 27 6 2.2536 -5.8489 0.3327 28 6 1.5117 -4.6938 0.2299 29 1 -0.4849 0.8401 0.0004 30 1 4.0308 -2.4380 -0.0061 31 1 5.3673 -4.4904 0.1863 32 1 5.5270 -6.9642 0.4256 33 1 2.7549 -8.2574 0.5688 34 1 3.8597 -13.3524 0.1710 35 1 8.4561 -10.2421 1.6153 36 1 1.7576 -6.8038 0.4247 37 1 0.4329 -4.7429 0.2416 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409349549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:47 Heat of formation + Delta-G solvation = 53.364153 kcal Electronic energy + Delta-G solvation = -27384.577246 eV Core-core repulsion = 22907.856704 eV Total energy + Delta-G solvation = -4476.720542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.088 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -41.99576 -40.67803 -39.07734 -38.98903 -37.96321 -37.51616 -34.64695 -34.12889 -33.31055 -33.19931 -31.83149 -30.41060 -28.90108 -26.76383 -25.75670 -24.79731 -23.98339 -22.38058 -21.89066 -20.45320 -19.74596 -19.18582 -18.94845 -18.85155 -18.36372 -18.29805 -17.71887 -16.39834 -16.23670 -15.58049 -15.33850 -15.21491 -14.84759 -14.73814 -14.37129 -14.19407 -13.74581 -13.53190 -13.22864 -12.64247 -12.52993 -12.47672 -12.13285 -12.01799 -11.88108 -11.75723 -11.52380 -11.19392 -11.09911 -11.02133 -10.95996 -10.88254 -10.86219 -10.64239 -10.01343 -9.70878 -9.63290 -9.18489 -8.37416 -7.43618 -7.27089 -4.07717 -0.58247 -0.47772 0.18071 0.69174 1.26391 2.25130 2.35272 2.43085 2.68173 2.70295 2.78098 2.81226 3.33190 3.39211 3.40349 4.01705 4.12286 4.28780 4.35041 4.61709 4.76101 5.14542 5.26704 5.34382 5.55920 5.63434 5.76468 5.97626 6.09937 6.20609 6.30900 6.31180 6.50557 6.51114 6.56160 6.60635 6.64803 6.77988 7.00094 7.15014 7.31480 7.36277 7.45279 7.64356 7.99425 9.29170 9.74333 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.031826 B = 0.001700 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.563548 B =16461.865177 C =17181.841788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.040 3.960 3 Si 0.953 3.047 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.369 4.369 8 H 0.104 0.896 9 O -0.077 6.077 10 C 0.090 3.910 11 C -0.253 4.253 12 C -0.018 4.018 13 C -0.235 4.235 14 C 0.065 3.935 15 C -0.234 4.234 16 C 0.448 3.552 17 N -0.530 5.530 18 C 0.448 3.552 19 O -0.466 6.466 20 C -0.199 4.199 21 N -0.008 5.008 22 O -0.139 6.139 23 O -0.139 6.139 24 C 0.450 3.550 25 O -0.466 6.466 26 N -0.536 5.536 27 C -0.038 4.038 28 C -0.195 4.195 29 H 0.295 0.705 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.421 0.579 35 H 0.422 0.578 36 H 0.116 0.884 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -10.692 0.926 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.447 4.447 8 H 0.121 0.879 9 O 0.032 5.968 10 C 0.030 3.970 11 C -0.272 4.272 12 C -0.037 4.037 13 C -0.237 4.237 14 C 0.043 3.957 15 C -0.255 4.255 16 C 0.198 3.802 17 N -0.257 5.257 18 C 0.255 3.745 19 O -0.276 6.276 20 C -0.292 4.292 21 N 0.486 4.514 22 O -0.343 6.343 23 O -0.343 6.343 24 C 0.257 3.743 25 O -0.275 6.275 26 N -0.265 5.265 27 C -0.056 4.056 28 C -0.214 4.214 29 H 0.108 0.892 30 H 0.142 0.858 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.161 0.839 34 H 0.284 0.716 35 H 0.284 0.716 36 H 0.134 0.866 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.114 -9.000 0.764 10.907 hybrid contribution 1.221 -0.533 0.085 1.336 sum 7.336 -9.533 0.850 12.059 Atomic orbital electron populations 1.68927 1.08255 1.31173 1.32151 1.27265 0.95441 0.99727 0.95504 0.85414 0.80123 0.77745 0.79251 1.17730 1.19102 1.19072 1.21446 0.93949 0.82520 1.46782 0.87947 1.80238 1.38502 1.12626 1.65417 1.19395 0.90002 0.86233 1.01329 1.20637 0.93213 0.98648 1.14726 1.20814 0.98063 0.91360 0.93485 1.18156 0.92870 0.91817 1.20831 1.22348 0.99183 0.91158 0.83003 1.20914 0.98549 0.86752 1.19311 1.21681 0.84494 0.91257 0.82769 1.68612 1.39184 0.97394 1.20560 1.18776 0.83034 0.87404 0.85262 1.84742 1.78055 1.28823 1.35933 1.22377 0.92117 0.85063 1.29596 1.49801 0.98068 1.01087 1.02396 1.96292 1.57478 1.72081 1.08417 1.96292 1.58278 1.56888 1.22817 1.18748 0.85714 0.84445 0.85362 1.84742 1.12450 1.94306 1.36044 1.68580 1.07509 1.28938 1.21427 1.20760 0.92687 0.96586 0.95609 1.19898 0.99200 0.89952 1.12394 0.89221 0.85846 0.87234 0.85854 0.83853 0.71625 0.71594 0.86613 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.11 13.66 55.99 0.76 -17.35 16 2 C 0.04 0.87 5.69 -15.21 -0.09 0.78 16 3 Si 0.95 16.01 29.64 -169.99 -5.04 10.97 16 4 H -0.25 -4.14 7.11 56.52 0.40 -3.74 16 5 H -0.27 -4.38 7.11 56.52 0.40 -3.97 16 6 H -0.27 -4.38 7.11 56.52 0.40 -3.98 16 7 C -0.37 -8.46 9.47 34.09 0.32 -8.14 16 8 H 0.10 2.17 5.00 -52.49 -0.26 1.91 16 9 O -0.08 -1.85 9.27 21.33 0.20 -1.65 16 10 C 0.09 1.92 6.60 -38.92 -0.26 1.66 16 11 C -0.25 -4.85 9.10 -39.45 -0.36 -5.21 16 12 C -0.02 -0.31 9.78 -39.17 -0.38 -0.69 16 13 C -0.23 -3.83 5.87 -105.01 -0.62 -4.45 16 14 C 0.07 0.92 9.43 -37.27 -0.35 0.57 16 15 C -0.23 -3.22 9.50 -37.28 -0.35 -3.57 16 16 C 0.45 6.23 7.54 -156.91 -1.18 5.04 16 17 N -0.53 -7.24 10.39 -11.45 -0.12 -7.36 16 18 C 0.45 5.61 7.82 -16.82 -0.13 5.48 16 19 O -0.47 -4.84 13.38 -18.34 -0.25 -5.08 16 20 C -0.20 -2.55 6.38 -79.26 -0.51 -3.06 16 21 N -0.01 -0.11 4.51 34.30 0.15 0.05 16 22 O -0.14 -1.96 19.97 -31.57 -0.63 -2.59 16 23 O -0.14 -1.96 19.97 -31.57 -0.63 -2.59 16 24 C 0.45 5.58 7.82 -16.81 -0.13 5.45 16 25 O -0.47 -4.79 13.38 -18.32 -0.25 -5.03 16 26 N -0.54 -7.20 9.37 -11.45 -0.11 -7.31 16 27 C -0.04 -0.63 9.40 -39.17 -0.37 -1.00 16 28 C -0.20 -3.73 9.97 -39.46 -0.39 -4.12 16 29 H 0.30 6.01 8.26 -40.82 -0.34 5.68 16 30 H 0.12 2.29 5.67 -52.49 -0.30 1.99 16 31 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 32 H 0.12 1.63 7.37 -52.49 -0.39 1.24 16 33 H 0.14 1.90 6.06 -52.49 -0.32 1.58 16 34 H 0.42 2.19 9.06 45.56 0.41 2.60 16 35 H 0.42 2.17 9.06 45.56 0.41 2.59 16 36 H 0.12 1.65 6.16 -52.49 -0.32 1.32 16 37 H 0.12 2.10 8.06 -52.48 -0.42 1.67 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -27.75 352.00 -6.13 -33.89 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -0.74 Total: 10.00 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -4.80 Total: -11.26 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.69 Total: -31.97 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -1.55 Total: -16.94 kcal Atomic # 14 Polarization: 16.01 SS G_CDS: -5.04 Total: 10.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.75 -6.13 -33.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409349549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.251 kcal (2) G-P(sol) polarization free energy of solvation -27.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds