Wall clock time and date at job start Tue Mar 31 2020 07:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86794 * 120.00076 * 2 1 4 4 H 1.48507 * 109.47502 * 274.89894 * 3 2 1 5 5 H 1.48506 * 109.47312 * 34.89957 * 3 2 1 6 6 H 1.48497 * 109.47423 * 154.89958 * 3 2 1 7 7 C 1.38641 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99996 * 5.29208 * 7 2 1 9 9 O 1.34802 * 120.00166 * 185.29122 * 7 2 1 10 10 C 1.35609 * 117.00165 * 185.43376 * 9 7 2 11 11 C 1.38727 * 120.15828 * 92.89739 * 10 9 7 12 12 C 1.38119 * 120.07870 * 180.30160 * 11 10 9 13 13 C 1.38522 * 120.40989 * 359.67270 * 12 11 10 14 14 C 1.37885 * 120.31686 * 0.02562 * 13 12 11 15 15 C 1.39684 * 119.90593 * 0.02562 * 14 13 12 16 16 C 1.47301 * 120.19601 * 180.02562 * 15 14 13 17 17 N 1.29846 * 120.00056 * 176.25338 * 16 15 14 18 18 N 1.40101 * 120.00541 * 185.28158 * 17 16 15 19 19 C 1.34770 * 120.00245 * 183.84423 * 18 17 16 20 20 O 1.21316 * 120.00322 * 354.87738 * 19 18 17 21 21 C 1.50705 * 119.99949 * 174.87378 * 19 18 17 22 22 N 1.46900 * 109.47319 * 180.02562 * 21 19 18 23 23 C 1.46899 * 111.00213 * 180.02562 * 22 21 19 24 24 C 1.52996 * 109.46701 * 274.99761 * 23 22 21 25 25 C 1.52999 * 109.47113 * 180.02562 * 24 23 22 26 26 C 1.53001 * 109.47319 * 59.99633 * 25 24 23 27 27 C 1.53001 * 109.47290 * 300.00569 * 26 25 24 28 28 C 1.52999 * 109.47404 * 59.99483 * 27 26 25 29 29 H 0.97002 * 120.00013 * 0.02562 * 1 2 3 30 30 H 1.07995 * 119.95775 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.79270 * 179.69748 * 12 11 10 32 32 H 1.07994 * 119.84303 * 180.02562 * 13 12 11 33 33 H 1.07997 * 120.04915 * 180.02562 * 14 13 12 34 34 H 1.07999 * 120.00550 * 356.25593 * 16 15 14 35 35 H 0.96999 * 119.99314 * 3.84968 * 18 17 16 36 36 H 1.08998 * 109.46916 * 60.00081 * 21 19 18 37 37 H 1.09003 * 109.47124 * 300.00646 * 21 19 18 38 38 H 1.00907 * 110.99625 * 303.94911 * 22 21 19 39 39 H 1.08996 * 109.46999 * 34.99521 * 23 22 21 40 40 H 1.09008 * 109.47443 * 299.99378 * 24 23 22 41 41 H 1.08996 * 109.47705 * 59.99966 * 24 23 22 42 42 H 1.09000 * 109.47191 * 299.99661 * 25 24 23 43 43 H 1.08998 * 109.47776 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.47540 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.46966 * 59.99890 * 26 25 24 46 46 H 1.09000 * 109.46561 * 299.99569 * 27 26 25 47 47 H 1.08995 * 109.47386 * 180.02562 * 27 26 25 48 48 H 1.08993 * 109.47367 * 180.02562 * 28 27 26 49 49 H 1.09002 * 109.46745 * 59.99852 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.3935 2.1062 -1.3950 5 1 1.5026 2.6206 0.8011 6 1 3.5950 1.4125 0.5939 7 6 2.0087 -1.2007 0.0005 8 1 1.4722 -2.1341 -0.0853 9 8 3.3525 -1.2031 0.1082 10 6 3.9775 -2.4006 -0.0115 11 6 4.4474 -2.8211 -1.2472 12 6 5.0782 -4.0438 -1.3684 13 6 5.2529 -4.8557 -0.2596 14 6 4.7979 -4.4514 0.9776 15 6 4.1572 -3.2178 1.1151 16 6 3.6691 -2.7794 2.4339 17 7 3.1395 -1.6019 2.5716 18 7 2.7767 -1.1413 3.8440 19 6 2.1566 0.0477 3.9788 20 8 1.9956 0.7611 3.0109 21 6 1.6630 0.4909 5.3320 22 7 1.0282 1.8104 5.2136 23 6 0.5344 2.2758 6.5165 24 6 -0.8606 1.7001 6.7684 25 6 -1.3752 2.1853 8.1250 26 6 -1.4464 3.7137 8.1266 27 6 -0.0514 4.2895 7.8746 28 6 0.4633 3.8042 6.5180 29 1 -0.4850 0.8401 -0.0004 30 1 4.3150 -2.1940 -2.1164 31 1 5.4378 -4.3688 -2.3335 32 1 5.7478 -5.8097 -0.3648 33 1 4.9368 -5.0876 1.8392 34 1 3.7518 -3.4373 3.2864 35 1 2.9719 -1.6782 4.6280 36 1 2.5037 0.5525 6.0231 37 1 0.9362 -0.2293 5.7075 38 1 1.6624 2.4816 4.8069 39 1 1.2123 1.9425 7.3022 40 1 -1.5387 2.0334 5.9827 41 1 -0.8100 0.6113 6.7669 42 1 -0.6974 1.8524 8.9110 43 1 -2.3688 1.7748 8.3048 44 1 -1.8135 4.0594 9.0929 45 1 -2.1242 4.0466 7.3406 46 1 0.6264 3.9565 8.6606 47 1 -0.1020 5.3782 7.8762 48 1 1.4572 4.2140 6.3386 49 1 -0.2147 4.1371 5.7320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409378176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:11 Heat of formation + Delta-G solvation = 15.069971 kcal Electronic energy + Delta-G solvation = -30215.587993 eV Core-core repulsion = 26144.706174 eV Total energy + Delta-G solvation = -4070.881818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.44743 -39.06787 -38.50466 -36.17192 -35.88040 -34.63772 -32.35221 -31.67464 -30.96042 -30.21004 -29.53152 -28.76108 -25.82968 -24.53150 -23.12732 -22.74219 -21.66151 -21.62385 -20.22810 -20.01568 -19.81483 -17.63418 -17.20939 -16.71891 -16.53336 -15.79782 -15.53118 -15.22191 -14.94641 -14.60535 -14.37172 -14.32957 -14.14857 -14.06511 -13.54724 -13.36175 -12.93539 -12.90490 -12.65313 -12.43797 -12.29781 -12.18886 -11.91812 -11.83316 -11.55494 -11.43878 -11.25851 -11.19720 -11.08899 -10.74851 -10.59177 -10.48414 -10.22603 -10.01082 -9.89203 -9.40070 -9.25104 -9.14367 -9.01099 -8.41491 -8.07850 -7.93870 -7.42687 -5.74963 -3.43720 1.39503 1.97474 2.73943 2.93717 3.45992 3.68346 3.83989 3.98604 4.06741 4.38060 4.52455 4.57036 4.82945 4.85541 4.94155 5.01612 5.06861 5.09082 5.20665 5.24833 5.27420 5.32341 5.35480 5.37417 5.39940 5.44031 5.46034 5.61789 5.62517 5.70529 5.81995 5.85951 5.87375 5.96312 6.02367 6.05268 6.06862 6.13561 6.20926 6.31892 6.49803 6.61916 6.87712 6.94154 6.96590 7.22405 7.35247 7.42364 7.65053 8.15828 8.20837 8.62789 9.02542 9.66417 10.22882 11.36321 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.002741 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.617272 B =10214.486586 C =11297.472526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.079 3.921 3 Si 0.924 3.076 4 H -0.305 1.305 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.343 4.343 8 H 0.073 0.927 9 O -0.255 6.255 10 C 0.183 3.817 11 C -0.154 4.154 12 C -0.099 4.099 13 C -0.157 4.157 14 C -0.086 4.086 15 C -0.089 4.089 16 C 0.073 3.927 17 N -0.143 5.143 18 N -0.596 5.596 19 C 0.516 3.484 20 O -0.451 6.451 21 C 0.053 3.947 22 N -0.668 5.668 23 C 0.092 3.908 24 C -0.110 4.110 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.115 4.115 28 C -0.123 4.123 29 H 0.267 0.733 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.369 0.631 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.353 0.647 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.792 -1.345 16.908 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.120 4.120 3 Si 0.754 3.246 4 H -0.234 1.234 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.418 4.418 8 H 0.091 0.909 9 O -0.167 6.167 10 C 0.135 3.865 11 C -0.173 4.173 12 C -0.118 4.118 13 C -0.176 4.176 14 C -0.107 4.107 15 C -0.092 4.092 16 C -0.137 4.137 17 N 0.053 4.947 18 N -0.340 5.340 19 C 0.300 3.700 20 O -0.318 6.318 21 C -0.081 4.081 22 N -0.302 5.302 23 C -0.017 4.017 24 C -0.148 4.148 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.153 4.153 28 C -0.161 4.161 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.206 0.794 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.173 0.827 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.611 0.193 15.741 16.151 hybrid contribution 1.273 -0.363 1.487 1.991 sum 4.884 -0.170 17.228 17.908 Atomic orbital electron populations 1.69653 1.05596 1.27103 1.52605 1.23989 0.94407 0.97870 0.95740 0.85852 0.80902 0.82924 0.74874 1.23376 1.21503 1.19120 1.19964 0.76262 0.94870 1.50708 0.90933 1.83455 1.21297 1.21548 1.90393 1.19112 0.91175 0.85751 0.90500 1.21614 1.01319 0.96654 0.97713 1.21034 0.98309 0.94198 0.98255 1.20781 1.03839 1.00151 0.92781 1.20908 0.97909 0.94407 0.97488 1.18925 1.03174 0.95383 0.91735 1.24154 0.99580 0.93586 0.96403 1.75974 1.04941 1.14418 0.99354 1.47270 1.60681 1.21255 1.04788 1.20324 0.78092 0.80536 0.91065 1.90744 1.50243 1.51423 1.39342 1.21752 0.98483 0.94124 0.93758 1.60080 1.43575 1.03085 1.23411 1.21529 0.96299 0.94584 0.89328 1.21564 0.96171 1.00152 0.96946 1.21536 1.01005 0.95646 0.97452 1.21555 0.97122 0.95695 1.01478 1.21482 0.96779 1.00130 0.96883 1.21721 1.01704 0.94476 0.98203 0.92369 0.85569 0.86531 0.86533 0.86330 0.87755 0.79409 0.92744 0.88186 0.82662 0.94034 0.90836 0.92132 0.92351 0.91884 0.92240 0.91734 0.92211 0.91867 0.92058 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.68 13.96 55.48 0.77 -28.90 16 2 C 0.08 2.49 5.39 -17.52 -0.09 2.40 16 3 Si 0.92 26.88 26.06 -169.99 -4.43 22.45 16 4 H -0.31 -8.62 7.11 56.52 0.40 -8.22 16 5 H -0.29 -8.46 7.11 56.52 0.40 -8.05 16 6 H -0.27 -7.94 7.11 56.52 0.40 -7.54 16 7 C -0.34 -10.45 8.98 30.88 0.28 -10.17 16 8 H 0.07 2.37 7.99 -52.48 -0.42 1.95 16 9 O -0.25 -7.05 6.95 0.56 0.00 -7.05 16 10 C 0.18 4.19 5.61 -38.61 -0.22 3.98 16 11 C -0.15 -3.03 9.98 -39.44 -0.39 -3.43 16 12 C -0.10 -1.54 10.03 -39.52 -0.40 -1.94 16 13 C -0.16 -2.24 10.03 -39.61 -0.40 -2.64 16 14 C -0.09 -1.31 9.79 -39.17 -0.38 -1.70 16 15 C -0.09 -1.73 5.88 -104.88 -0.62 -2.35 16 16 C 0.07 1.37 10.73 -14.71 -0.16 1.21 16 17 N -0.14 -3.18 7.95 32.13 0.26 -2.92 16 18 N -0.60 -10.69 6.26 31.22 0.20 -10.49 16 19 C 0.52 9.94 7.98 -10.99 -0.09 9.85 16 20 O -0.45 -11.39 13.74 5.53 0.08 -11.31 16 21 C 0.05 0.71 5.97 -4.97 -0.03 0.68 16 22 N -0.67 -9.67 5.93 -107.99 -0.64 -10.31 16 23 C 0.09 1.02 2.49 -67.71 -0.17 0.85 16 24 C -0.11 -1.20 5.42 -26.73 -0.15 -1.35 16 25 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 26 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 27 C -0.11 -0.95 5.92 -26.73 -0.16 -1.11 16 28 C -0.12 -1.25 5.19 -26.73 -0.14 -1.39 16 29 H 0.27 8.38 8.31 -40.82 -0.34 8.04 16 30 H 0.13 2.44 8.06 -52.49 -0.42 2.01 16 31 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.11 1.43 8.03 -52.49 -0.42 1.01 16 35 H 0.37 4.67 8.67 -182.60 -1.58 3.09 16 36 H 0.05 0.57 8.05 -51.93 -0.42 0.15 16 37 H 0.10 1.20 7.44 -51.93 -0.39 0.81 16 38 H 0.35 5.36 8.04 -39.29 -0.32 5.04 16 39 H 0.04 0.42 7.80 -51.93 -0.40 0.01 16 40 H 0.07 0.94 8.14 -51.92 -0.42 0.51 16 41 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 49 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 400.71 15.07 6.04 6.04 Total: -1.00 -38.88 400.71 -10.12 -49.00 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.97 Total: 2.93 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -3.42 Total: -9.43 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.58 Total: -52.63 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.08 Total: -18.36 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -4.43 Total: 22.45 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.88 -10.12 -49.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409378176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.068 kcal (2) G-P(sol) polarization free energy of solvation -38.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds